RLG00000022767

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001204
Physical Location & Seq
Forward (+)
11914548 .. 11916921
2374 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022767

Sequence Viewer

Length: 357 bp
ATGGCTATGGATGGAACCATTAGATCCGGTGACGATGCTCGAGCTCTAACTAACCGGATAGCTTCTCAGTCTCACCAACCTCACCTGCTGCTAGCCGCTCGTCTCCAGACCTTCGCCATTCTCGACGCCAAGCTCAATCTATCTCTAATCGGCTACTCACCCCAGATTTTACATTCAAATCTAATTCACCAAAATGGTTCCAAGAGCTTGGAAAACCCTGAATTGAATCAAAATCCCGACCCAGGGCTTGCCTTTACAGCTCTAATGGAGCAAAGAAACTGGCCCAGGATGCAGAGACCAACAGCTGCCTCTGACATTGTCTCCGCCGAGGCCTTGCTGGTTCCACCAGTGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.89

Weight (kDa)

6.39

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 93
Acc36I ACCTGC 1 cut(s) 93
AccBSI CCGCTC 1 cut(s) 98
AciI CCGC 2 cut(s) 96, 324
AclWI GGATC 1 cut(s) 18
AcyI GRCGYC 1 cut(s) 126
AfiI CCNNNNNNNGG 2 cut(s) 242, 243
AgsI TTSAA 2 cut(s) 177, 226
AjnI CCWGG 2 cut(s) 241, 284
AluBI AGCT 6 cut(s) 44, 62, 133, 207, 260, 305
AluI AGCT 6 cut(s) 44, 62, 133, 207, 260, 305
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 4 cut(s) 75, 107, 289, 325
AlwI GGATC 1 cut(s) 18
Ama87I CYCGRG 1 cut(s) 39
AoxI GGCC 2 cut(s) 281, 330
ApeKI GCWGC 2 cut(s) 88, 305
AspS9I GGNCC 1 cut(s) 282
AsuHPI GGTGA 5 cut(s) 41, 65, 74, 150, 179
AsuNHI GCTAGC 1 cut(s) 91
AvaI CYCGRG 1 cut(s) 39
BanII GRGCYC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 46
BbvI GCAGC 2 cut(s) 75, 292
BccI CCATC 1 cut(s) 5
BciT130I CCWGG 2 cut(s) 243, 286
BcoDI GTCTC 4 cut(s) 75, 107, 289, 325
BfaI CTAG 1 cut(s) 92
BfuAI ACCTGC 1 cut(s) 93
BisI GCNGC 3 cut(s) 89, 96, 306
BlsI GCNGC 3 cut(s) 90, 97, 307
Bme1390I CCNGG 2 cut(s) 243, 286
BmeT110I CYCGRG 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 282
BmiI GGNNCC 3 cut(s) 16, 199, 342
BmrFI CCNGG 2 cut(s) 243, 286
BmsI GCATC 2 cut(s) 25, 279
BmtI GCTAGC 1 cut(s) 95
BpmI CTGGAG 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 289
BsaJI CCNNGG 4 cut(s) 241, 242, 284, 327
BsaWI WCCGGW 2 cut(s) 26, 54
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 243
Bse1I ACTGG 2 cut(s) 284, 347
BseBI CCWGG 2 cut(s) 243, 286
BseDI CCNNGG 4 cut(s) 241, 242, 284, 327
BseGI GGATG 2 cut(s) 16, 294
BseLI CCNNNNNNNGG 2 cut(s) 242, 243
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 2 cut(s) 284, 347
BseXI GCAGC 2 cut(s) 75, 292
BshFI GGCC 2 cut(s) 283, 332
BsiHKAI GWGCWC 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 39
BsiSI CCGG 2 cut(s) 27, 55
BslI CCNNNNNNNGG 2 cut(s) 242, 243
BsmAI GTCTC 4 cut(s) 75, 107, 289, 325
BsmBI CGTCTC 1 cut(s) 107
BsnI GGCC 2 cut(s) 283, 332
Bso31I GGTCTC 1 cut(s) 289
BsoBI CYCGRG 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 2 cut(s) 23, 351
BspACI CCGC 2 cut(s) 96, 324
BspANI GGCC 2 cut(s) 283, 332
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 3 cut(s) 16, 199, 342
BspMI ACCTGC 1 cut(s) 93
BspOI GCTAGC 1 cut(s) 95
BspPI GGATC 1 cut(s) 18
BspTNI GGTCTC 1 cut(s) 289
BsrBI CCGCTC 1 cut(s) 98
BsrI ACTGG 2 cut(s) 284, 347
BssECI CCNNGG 4 cut(s) 241, 242, 284, 327
BssMI GATC 2 cut(s) 23, 351
BssNI GRCGYC 1 cut(s) 126
Bst2UI CCWGG 2 cut(s) 243, 286
BstACI GRCGYC 1 cut(s) 126
BstC8I GCNNGC 2 cut(s) 93, 249
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 16, 294
BstKTI GATC 2 cut(s) 26, 354
BstMAI GTCTC 4 cut(s) 75, 107, 289, 325
BstMBI GATC 2 cut(s) 23, 351
BstMWI GCNNNNNNNGC 2 cut(s) 257, 289
BstNI CCWGG 2 cut(s) 243, 286
BstSCI CCNGG 2 cut(s) 241, 284
BstV1I GCAGC 2 cut(s) 75, 292
BstX2I RGATCY 1 cut(s) 23
BstXI CCANNNNNNTGG 1 cut(s) 208
BstYI RGATCY 1 cut(s) 23
BsuRI GGCC 2 cut(s) 283, 332
BtsCI GGATG 2 cut(s) 16, 294
BtsIMutI CAGTG 1 cut(s) 354
BveI ACCTGC 1 cut(s) 93
Cac8I GCNNGC 2 cut(s) 93, 249
Cfr13I GGNCC 1 cut(s) 282
CseI GACGC 1 cut(s) 134
DdeI CTNAG 1 cut(s) 66
DpnI GATC 2 cut(s) 25, 353
DpnII GATC 2 cut(s) 23, 351
EciI GGCGGA 1 cut(s) 313
Ecl136II GAGCTC 1 cut(s) 44
Eco147I AGGCCT 1 cut(s) 332
Eco24I GRGCYC 1 cut(s) 46
Eco31I GGTCTC 1 cut(s) 289
Eco53kI GAGCTC 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 39
EcoICRI GAGCTC 1 cut(s) 44
EcoRII CCWGG 2 cut(s) 241, 284
EcoT38I GRGCYC 1 cut(s) 46
Esp3I CGTCTC 1 cut(s) 107
FaiI YATR 1 cut(s) 8
Fnu4HI GCNGC 3 cut(s) 89, 96, 306
FokI GGATG 2 cut(s) 23, 301
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 3 cut(s) 89, 96, 306
FspBI CTAG 1 cut(s) 92
GluI GCNGC 3 cut(s) 89, 96, 306
GsuI CTGGAG 1 cut(s) 89
HaeIII GGCC 2 cut(s) 283, 332
HapII CCGG 2 cut(s) 27, 55
HgaI GACGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 126
HinfI GANTC 1 cut(s) 226
HpaII CCGG 2 cut(s) 27, 55
HphI GGTGA 5 cut(s) 41, 65, 74, 150, 179
Hpy188I TCNGA 1 cut(s) 313
Hpy188III TCNNGA 3 cut(s) 106, 122, 236
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 289
HpyF3I CTNAG 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 126
Kzo9I GATC 2 cut(s) 23, 351
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 2 cut(s) 75, 292
LweI GCATC 2 cut(s) 25, 279
MaeI CTAG 1 cut(s) 92
MaeIII GTNAC 1 cut(s) 29
MalI GATC 2 cut(s) 25, 353
MbiI CCGCTC 1 cut(s) 98
MboI GATC 2 cut(s) 23, 351
MflI RGATCY 1 cut(s) 23
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 2 cut(s) 183, 221
MnlI CCTC 3 cut(s) 90, 319, 322
MslI CAYNNNNRTG 1 cut(s) 192
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 2 cut(s) 27, 55
MspR9I CCNGG 2 cut(s) 243, 286
MvaI CCWGG 2 cut(s) 243, 286
MwoI GCNNNNNNNGC 2 cut(s) 257, 289
NdeII GATC 2 cut(s) 23, 351
NheI GCTAGC 1 cut(s) 91
NlaIV GGNNCC 3 cut(s) 16, 199, 342
NmeAIII GCCGAG 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 29
PaeR7I CTCGAG 1 cut(s) 39
PaqCI CACCTGC 1 cut(s) 93
PasI CCCWGGG 1 cut(s) 242
PceI AGGCCT 1 cut(s) 332
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 1 cut(s) 226
PflFI GACNNNGTC 1 cut(s) 317
PkrI GCNGC 3 cut(s) 90, 97, 307
Psp124BI GAGCTC 1 cut(s) 46
Psp6I CCWGG 2 cut(s) 241, 284
PspGI CCWGG 2 cut(s) 241, 284
PspN4I GGNNCC 3 cut(s) 16, 199, 342
PspPI GGNCC 1 cut(s) 282
PspXI VCTCGAGB 1 cut(s) 39
PsuI RGATCY 1 cut(s) 23
PsyI GACNNNGTC 1 cut(s) 317
PvuII CAGCTG 1 cut(s) 305
RseI CAYNNNNRTG 1 cut(s) 192
SacI GAGCTC 1 cut(s) 46
SatI GCNGC 3 cut(s) 89, 96, 306
Sau3AI GATC 2 cut(s) 23, 351
Sau96I GGNCC 1 cut(s) 282
ScrFI CCNGG 2 cut(s) 243, 286
SduI GDGCHC 1 cut(s) 46
SetI ASST 9 cut(s) 46, 64, 82, 87, 113, 135, 209, 262, 307
SfaNI GCATC 2 cut(s) 25, 279
Sfr274I CTCGAG 1 cut(s) 39
SlaI CTCGAG 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 39
SmoI CTYRAG 1 cut(s) 39
Sse9I AATT 2 cut(s) 183, 221
SseBI AGGCCT 1 cut(s) 332
SsiI CCGC 2 cut(s) 96, 324
SspMI CTAG 1 cut(s) 92
SstI GAGCTC 1 cut(s) 46
StuI AGGCCT 1 cut(s) 332
StyD4I CCNGG 2 cut(s) 241, 284
TaqI TCGA 2 cut(s) 40, 123
TasI AATT 2 cut(s) 183, 221
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 226
TscAI CASTG 1 cut(s) 354
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 2 cut(s) 88, 305
Tsp45I GTSAC 1 cut(s) 29
TspRI CASTG 1 cut(s) 354
Tth111I GACNNNGTC 1 cut(s) 317
XhoI CTCGAG 1 cut(s) 39
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.