MD16G1084000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0001204
Physical Location & Seq
Reverse (-)
5903848 .. 5905376
1529 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1084000.v1.1.491

Sequence Viewer

Length: 171 bp
ATGGAGGAGACTGACCGGACCAGGGTGCAGAGACCGGCAGCTGCCTCTGACATTGTCGCCGCCGAGGCCGTGTTGGTTCCACCGGTGGTCTATGGCCTCCACGTTTCCGGCGAAGACGAGCAAGAACGGCGGCAGAGAACCCAGCTCGTAAATCCTTCTCTTCCTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.2

Weight (kDa)

4.87

Isoelectric Point (pI)

54.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 60, 130
AfiI CCNNNNNNNGG 1 cut(s) 22
AgeI ACCGGT 1 cut(s) 82
AjnI CCWGG 1 cut(s) 20
AluBI AGCT 2 cut(s) 41, 145
AluI AGCT 2 cut(s) 41, 145
Alw26I GTCTC 2 cut(s) 2, 25
AoxI GGCC 2 cut(s) 66, 94
ApeKI GCWGC 2 cut(s) 38, 41
AsiGI ACCGGT 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 18
AvaII GGWCC 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 120
BbvI GCAGC 2 cut(s) 28, 50
BceAI ACGGC 2 cut(s) 53, 143
BciT130I CCWGG 1 cut(s) 22
BcoDI GTCTC 2 cut(s) 2, 25
BglI GCCNNNNNGGC 1 cut(s) 65
BisI GCNGC 4 cut(s) 39, 42, 60, 131
BlsI GCNGC 4 cut(s) 40, 43, 61, 132
Bme1390I CCNGG 1 cut(s) 22
Bme18I GGWCC 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 25
BsaJI CCNNGG 2 cut(s) 21, 63
BsaWI WCCGGW 2 cut(s) 15, 82
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse118I RCCGGY 2 cut(s) 34, 82
BseBI CCWGG 1 cut(s) 22
BseDI CCNNGG 2 cut(s) 21, 63
BseLI CCNNNNNNNGG 1 cut(s) 22
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 2 cut(s) 28, 50
BseYI CCCAGC 1 cut(s) 141
BsgI GTGCAG 1 cut(s) 47
BshFI GGCC 2 cut(s) 68, 96
BshTI ACCGGT 1 cut(s) 82
BsiSI CCGG 4 cut(s) 16, 35, 83, 108
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 2 cut(s) 2, 25
BsnI GGCC 2 cut(s) 68, 96
Bso31I GGTCTC 1 cut(s) 25
BspACI CCGC 2 cut(s) 60, 130
BspANI GGCC 2 cut(s) 68, 96
BspLI GGNNCC 1 cut(s) 78
BspTNI GGTCTC 1 cut(s) 25
BsrFI RCCGGY 2 cut(s) 34, 82
BssAI RCCGGY 2 cut(s) 34, 82
BssECI CCNNGG 2 cut(s) 21, 63
Bst2UI CCWGG 1 cut(s) 22
Bst6I CTCTTC 1 cut(s) 165
BstMAI GTCTC 2 cut(s) 2, 25
BstMWI GCNNNNNNNGC 2 cut(s) 65, 127
BstNI CCWGG 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 28, 50
BstV2I GAAGAC 1 cut(s) 120
BsuRI GGCC 2 cut(s) 68, 96
Cfr10I RCCGGY 2 cut(s) 34, 82
Cfr13I GGNCC 1 cut(s) 18
CspAI ACCGGT 1 cut(s) 82
CviJI RGCY 4 cut(s) 41, 68, 96, 145
CviKI_1 RGCY 4 cut(s) 41, 68, 96, 145
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 20
FaiI YATR 1 cut(s) 93
Fnu4HI GCNGC 4 cut(s) 39, 42, 60, 131
Fsp4HI GCNGC 4 cut(s) 39, 42, 60, 131
GluI GCNGC 4 cut(s) 39, 42, 60, 131
GsaI CCCAGC 1 cut(s) 145
HaeIII GGCC 2 cut(s) 68, 96
HapII CCGG 4 cut(s) 16, 35, 83, 108
HpaII CCGG 4 cut(s) 16, 35, 83, 108
Hpy188I TCNGA 1 cut(s) 49
HpyAV CCTTC 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 28
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 127
HpySE526I ACGT 1 cut(s) 102
LpnPI CCDG 7 cut(s) 7, 29, 34, 48, 96, 121, 155
Lsp1109I GCAGC 2 cut(s) 28, 50
MaeII ACGT 1 cut(s) 102
MboII GAAGA 2 cut(s) 125, 152
MnlI CCTC 3 cut(s) 55, 58, 107
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 4 cut(s) 16, 35, 83, 108
MspR9I CCNGG 1 cut(s) 22
MvaI CCWGG 1 cut(s) 22
MwoI GCNNNNNNNGC 2 cut(s) 65, 127
NlaIV GGNNCC 1 cut(s) 78
NmeAIII GCCGAG 1 cut(s) 88
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PflFI GACNNNGTC 1 cut(s) 53
PinAI ACCGGT 1 cut(s) 82
PkrI GCNGC 4 cut(s) 40, 43, 61, 132
Psp6I CCWGG 1 cut(s) 20
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 1 cut(s) 20
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 18
PsyI GACNNNGTC 1 cut(s) 53
PvuII CAGCTG 1 cut(s) 41
SatI GCNGC 4 cut(s) 39, 42, 60, 131
Sau96I GGNCC 1 cut(s) 18
ScrFI CCNGG 1 cut(s) 22
SetI ASST 3 cut(s) 43, 105, 147
SgrAI CRCCGGYG 1 cut(s) 82
SinI GGWCC 1 cut(s) 18
SsiI CCGC 2 cut(s) 60, 130
StyD4I CCNGG 1 cut(s) 20
TaiI ACGT 1 cut(s) 105
TauI GCSGC 2 cut(s) 62, 133
TseI GCWGC 2 cut(s) 38, 41
Tth111I GACNNNGTC 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.