RchiOBHm_Chr2g0113081

Calmodulin-binding transcription activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001204
Physical Location & Seq
Reverse (-)
25217857 .. 25221940
4084 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48646

Sequence Viewer

Length: 393 bp
ATGGCCGAATCACAGCGGCTATTAGGTGGATCACTTTTTCTTGTCGACCGGAAGAAGGTGAAACATTATAAGAGGGATGGTCATAACTGGAGGAAGAAAAAAGATGGAAAGACAGTGATGGAGGGGAATGAGAAGCTCAAGGTTGGACATGTTCATAAGTTGCGCTGCTACTATGCCCCTGGAGAAGAAAATAAAAATTTCAAGAGACGCATTTATTCGATGCTTGAAGAGGATCTCAAACACATTGTTCTCGTCCACTACCGGGAAGAAGAGTCGACTTCAGGGGTGCTACTCTTCAATGGTACCTTTTTATGGCACGTTTACTTACTTGGAATGGAAAATAATCATGAATCGGAGACAAATGGAATGGGAGAAGAAAGGAATCGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0098542 GO:0099402 GO:0140110 GO:1900367 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000068 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 CG-1 IQ TIG

Protein Analysis

130

Amino Acids

15.44

Weight (kDa)

9.28

Isoelectric Point (pI)

50.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CG-1 PF03859 5 - 89 4.1e-32 CG-1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 69
Acc65I GGTACC 1 cut(s) 302
AccB1I GGYRCC 1 cut(s) 302
AccI GTMKAC 2 cut(s) 45, 275
AciI CCGC 1 cut(s) 16
AclWI GGATC 2 cut(s) 37, 240
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 1 cut(s) 304
AfiI CCNNNNNNNGG 3 cut(s) 55, 262, 312
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 3 cut(s) 202, 227, 298
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw26I GTCTC 2 cut(s) 199, 350
AlwI GGATC 2 cut(s) 37, 240
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 165
ApoI RAATTY 1 cut(s) 196
Asp718I GGTACC 1 cut(s) 302
AspLEI GCGC 1 cut(s) 165
AsuC2I CCSGG 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 70
BanI GGYRCC 1 cut(s) 302
BbvI GCAGC 1 cut(s) 152
BccI CCATC 3 cut(s) 71, 98, 112
BciT130I CCWGG 1 cut(s) 180
BcnI CCSGG 1 cut(s) 263
BcoDI GTCTC 2 cut(s) 199, 350
BisI GCNGC 2 cut(s) 17, 166
BlsI GCNGC 2 cut(s) 18, 167
Bme1390I CCNGG 2 cut(s) 180, 263
BmiI GGNNCC 1 cut(s) 304
BmrFI CCNGG 2 cut(s) 180, 263
BmsI GCATC 1 cut(s) 210
BpmI CTGGAG 2 cut(s) 109, 201
BpuEI CTTGAG 1 cut(s) 122
BpuMI CCSGG 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 178
BsaWI WCCGGW 1 cut(s) 48
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 262, 312
Bse1I ACTGG 1 cut(s) 92
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 3 cut(s) 55, 262, 312
BseNI ACTGG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 152
Bsh1285I CGRYCG 1 cut(s) 49
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 302
BsiEI CGRYCG 1 cut(s) 49
BsiSI CCGG 2 cut(s) 49, 262
BslI CCNNNNNNNGG 3 cut(s) 55, 262, 312
BsmAI GTCTC 2 cut(s) 199, 350
BsmBI CGTCTC 1 cut(s) 199
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 29, 232
BspACI CCGC 1 cut(s) 16
BspANI GGCC 1 cut(s) 5
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 1 cut(s) 304
BspPI GGATC 2 cut(s) 37, 240
BspT107I GGYRCC 1 cut(s) 302
BsrI ACTGG 1 cut(s) 92
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 2 cut(s) 29, 232
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 3 cut(s) 222, 264, 299
BstF5I GGATG 1 cut(s) 82
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 2 cut(s) 32, 235
BstMAI GTCTC 2 cut(s) 199, 350
BstMBI GATC 2 cut(s) 29, 232
BstMCI CGRYCG 1 cut(s) 49
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 178, 261
BstV1I GCAGC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 120
CciI TCATGA 1 cut(s) 346
CfoI GCGC 1 cut(s) 165
CseI GACGC 1 cut(s) 216
Csp6I GTAC 1 cut(s) 303
CviAII CATG 2 cut(s) 149, 347
CviJI RGCY 3 cut(s) 5, 19, 136
CviKI_1 RGCY 3 cut(s) 5, 19, 136
CviQI GTAC 1 cut(s) 303
DpnI GATC 2 cut(s) 31, 234
DpnII GATC 2 cut(s) 29, 232
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 222, 264, 299
EarI CTCTTC 3 cut(s) 222, 264, 299
Eco57I CTGAAG 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 178
Esp3I CGTCTC 1 cut(s) 199
FaeI CATG 2 cut(s) 152, 350
FaiI YATR 7 cut(s) 69, 84, 150, 156, 174, 313, 348
FatI CATG 2 cut(s) 148, 346
FblI GTMKAC 2 cut(s) 45, 275
Fnu4HI GCNGC 2 cut(s) 17, 166
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 2 cut(s) 17, 166
GlaI GCGC 1 cut(s) 164
GluI GCNGC 2 cut(s) 17, 166
GsuI CTGGAG 2 cut(s) 109, 201
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 49, 262
HgaI GACGC 1 cut(s) 216
HhaI GCGC 1 cut(s) 165
Hin1II CATG 2 cut(s) 152, 350
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HincII GTYRAC 2 cut(s) 46, 276
HindII GTYRAC 2 cut(s) 46, 276
HinfI GANTC 4 cut(s) 8, 272, 350, 382
HpaII CCGG 2 cut(s) 49, 262
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 4 cut(s) 46, 256, 276, 322
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 2 cut(s) 202, 347
Hpy8I GTNNAC 4 cut(s) 46, 256, 276, 322
HpyAV CCTTC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4IV ACGT 1 cut(s) 318
HpySE526I ACGT 1 cut(s) 318
Hsp92II CATG 2 cut(s) 152, 350
HspAI GCGC 1 cut(s) 163
KpnI GGTACC 1 cut(s) 306
Kzo9I GATC 2 cut(s) 29, 232
LpnPI CCDG 6 cut(s) 62, 73, 165, 192, 267, 275
Lsp1109I GCAGC 1 cut(s) 152
LweI GCATC 1 cut(s) 210
MaeII ACGT 1 cut(s) 318
MalI GATC 2 cut(s) 31, 234
MboI GATC 2 cut(s) 29, 232
MboII GAAGA 8 cut(s) 64, 106, 197, 239, 278, 281, 286, 386
MflI RGATCY 1 cut(s) 232
MluCI AATT 1 cut(s) 196
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 4 cut(s) 66, 84, 115, 223
MspA1I CMGCKG 1 cut(s) 16
MspI CCGG 2 cut(s) 49, 262
MspR9I CCNGG 2 cut(s) 180, 263
MvaI CCWGG 1 cut(s) 180
NciI CCSGG 1 cut(s) 263
NdeII GATC 2 cut(s) 29, 232
NlaIII CATG 2 cut(s) 152, 350
NlaIV GGNNCC 1 cut(s) 304
NspI RCATGY 1 cut(s) 152
PagI TCATGA 1 cut(s) 346
PciI ACATGT 1 cut(s) 148
PfeI GAWTC 3 cut(s) 8, 350, 382
PkrI GCNGC 2 cut(s) 18, 167
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
PscI ACATGT 1 cut(s) 148
PsiI TTATAA 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 304
PsuI RGATCY 1 cut(s) 232
RsaI GTAC 1 cut(s) 304
RsaNI GTAC 1 cut(s) 303
SalI GTCGAC 2 cut(s) 44, 274
SatI GCNGC 2 cut(s) 17, 166
Sau3AI GATC 2 cut(s) 29, 232
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 2 cut(s) 180, 263
SetI ASST 6 cut(s) 28, 60, 138, 144, 308, 321
SfaNI GCATC 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 1 cut(s) 196
SsiI CCGC 1 cut(s) 16
StyD4I CCNGG 2 cut(s) 178, 261
TaaI ACNGT 1 cut(s) 115
TaiI ACGT 1 cut(s) 321
TaqI TCGA 3 cut(s) 45, 218, 275
TasI AATT 1 cut(s) 196
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 3 cut(s) 8, 350, 382
TscAI CASTG 1 cut(s) 120
TseI GCWGC 1 cut(s) 165
TspDTI ATGAA 2 cut(s) 143, 363
TspRI CASTG 1 cut(s) 120
XapI RAATTY 1 cut(s) 196
XceI RCATGY 1 cut(s) 152
XmiI GTMKAC 2 cut(s) 45, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.