Rh2DG246800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
25365699 .. 25375816
10118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG246800.1

Sequence Viewer

Length: 357 bp
ATGCTTGAAGAGGATCTCAAACACATTGTTCTCGTCCACTACCGGGAAGAAGAGGTGCTGAATAGTTCAGAAGGGACATCAGCTTGTAAGAATGATGACCTCAGAGCAGTGTGGAACTTGCTGGATAATTCAGAATCGATATGTCATTACTCGATTCCGGAGCTTTTCATTTTGCTTCTCCGCTCAGTATCTCTGGCAACGATCCGATTGGCTTCTCTATGCCGAATAGAGGTAGTCCCAGTTACATTGACTGGTCTAATTCCTCTAGAGCTTTGTGGTTGCTCTGAAGATGGAAAGAGGTCAGCACTCCAAGATGCATTGCTCTTCCGTTCACCAAGGTTATCAACTAAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.15

Weight (kDa)

5.13

Isoelectric Point (pI)

76.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 183
AccIII TCCGGA 1 cut(s) 157
AciI CCGC 1 cut(s) 181
AclWI GGATC 2 cut(s) 21, 196
AcuI CTGAAG 1 cut(s) 306
AfiI CCNNNNNNNGG 2 cut(s) 43, 229
AgsI TTSAA 1 cut(s) 8
AluBI AGCT 3 cut(s) 83, 163, 271
AluI AGCT 3 cut(s) 83, 163, 271
AlwI GGATC 2 cut(s) 21, 196
Aor13HI TCCGGA 1 cut(s) 157
AsuC2I CCSGG 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 324
BccI CCATC 1 cut(s) 284
BcnI CCSGG 1 cut(s) 44
BfaI CTAG 2 cut(s) 266, 355
Bme1390I CCNGG 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 44
BmrI ACTGGG 1 cut(s) 233
BmsI GCATC 1 cut(s) 304
BmuI ACTGGG 1 cut(s) 233
BpuMI CCSGG 1 cut(s) 44
Bsa29I ATCGAT 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 335
BsaWI WCCGGW 1 cut(s) 157
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 229
Bse1I ACTGG 2 cut(s) 239, 256
Bse3DI GCAATG 1 cut(s) 317
BseAI TCCGGA 1 cut(s) 157
BseCI ATCGAT 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 335
BseLI CCNNNNNNNGG 2 cut(s) 43, 229
BseMI GCAATG 1 cut(s) 317
BseMII CTCAG 2 cut(s) 115, 198
BseNI ACTGG 2 cut(s) 239, 256
BshVI ATCGAT 1 cut(s) 137
BsiSI CCGG 2 cut(s) 43, 158
BslFI GGGAC 2 cut(s) 88, 221
BslI CCNNNNNNNGG 2 cut(s) 43, 229
BsmFI GGGAC 2 cut(s) 88, 221
Bsp13I TCCGGA 1 cut(s) 157
Bsp143I GATC 2 cut(s) 13, 201
BspACI CCGC 1 cut(s) 181
BspCNI CTCAG 2 cut(s) 114, 197
BspDI ATCGAT 1 cut(s) 137
BspEI TCCGGA 1 cut(s) 157
BspPI GGATC 2 cut(s) 21, 196
BspQI GCTCTTC 1 cut(s) 329
BsrBI CCGCTC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 317
BsrI ACTGG 2 cut(s) 239, 256
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 2 cut(s) 13, 201
BssT1I CCWWGG 1 cut(s) 335
Bst6I CTCTTC 3 cut(s) 3, 45, 329
BstDEI CTNAG 2 cut(s) 101, 184
BstKTI GATC 2 cut(s) 16, 204
BstMBI GATC 2 cut(s) 13, 201
BstSCI CCNGG 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
Bsu15I ATCGAT 1 cut(s) 137
BsuTUI ATCGAT 1 cut(s) 137
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 114
ClaI ATCGAT 1 cut(s) 137
CviJI RGCY 5 cut(s) 83, 163, 212, 271, 354
CviKI_1 RGCY 5 cut(s) 83, 163, 212, 271, 354
DdeI CTNAG 2 cut(s) 101, 184
DpnI GATC 2 cut(s) 15, 203
DpnII GATC 2 cut(s) 13, 201
Eam1104I CTCTTC 3 cut(s) 3, 45, 329
EarI CTCTTC 3 cut(s) 3, 45, 329
Eco130I CCWWGG 1 cut(s) 335
Eco57I CTGAAG 1 cut(s) 306
EcoT14I CCWWGG 1 cut(s) 335
EcoT22I ATGCAT 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 335
FaiI YATR 2 cut(s) 142, 220
FaqI GGGAC 2 cut(s) 88, 221
FspBI CTAG 2 cut(s) 266, 355
HapII CCGG 2 cut(s) 43, 158
HinfI GANTC 2 cut(s) 134, 154
HpaII CCGG 2 cut(s) 43, 158
HphI GGTGA 1 cut(s) 324
Hpy166II GTNNAC 2 cut(s) 37, 332
Hpy188I TCNGA 5 cut(s) 70, 104, 133, 206, 286
Hpy188III TCNNGA 2 cut(s) 158, 266
Hpy8I GTNNAC 2 cut(s) 37, 332
HpyAV CCTTC 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 317
HpyF3I CTNAG 2 cut(s) 101, 184
Kpn2I TCCGGA 1 cut(s) 157
Kzo9I GATC 2 cut(s) 13, 201
LguI GCTCTTC 1 cut(s) 329
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 6 cut(s) 56, 107, 171, 179, 237, 252
LweI GCATC 1 cut(s) 304
MaeI CTAG 2 cut(s) 266, 355
MaeIII GTNAC 1 cut(s) 241
MalI GATC 2 cut(s) 15, 203
MbiI CCGCTC 1 cut(s) 183
MboI GATC 2 cut(s) 13, 201
MboII GAAGA 5 cut(s) 20, 59, 62, 299, 316
MflI RGATCY 1 cut(s) 13
MluCI AATT 2 cut(s) 127, 258
MnlI CCTC 6 cut(s) 4, 46, 110, 223, 273, 291
Mph1103I ATGCAT 1 cut(s) 319
MroI TCCGGA 1 cut(s) 157
MspI CCGG 2 cut(s) 43, 158
MspR9I CCNGG 1 cut(s) 44
NciI CCSGG 1 cut(s) 44
NdeII GATC 2 cut(s) 13, 201
NsiI ATGCAT 1 cut(s) 319
PciSI GCTCTTC 1 cut(s) 329
PfeI GAWTC 2 cut(s) 134, 154
PsuI RGATCY 1 cut(s) 13
SapI GCTCTTC 1 cut(s) 329
Sau3AI GATC 2 cut(s) 13, 201
ScrFI CCNGG 1 cut(s) 44
SetI ASST 8 cut(s) 57, 85, 102, 165, 234, 273, 302, 341
SfaNI GCATC 1 cut(s) 304
Sse9I AATT 2 cut(s) 127, 258
SsiI CCGC 1 cut(s) 181
SspMI CTAG 2 cut(s) 266, 355
StyD4I CCNGG 1 cut(s) 42
StyI CCWWGG 1 cut(s) 335
TaqI TCGA 2 cut(s) 137, 152
TasI AATT 2 cut(s) 127, 258
TfiI GAWTC 2 cut(s) 134, 154
TscAI CASTG 1 cut(s) 114
TspDTI ATGAA 1 cut(s) 157
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 1 cut(s) 114
XbaI TCTAGA 1 cut(s) 265
XspI CTAG 2 cut(s) 266, 355
Zsp2I ATGCAT 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.