Rorug07G0184300

calmodulin-binding transcription activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001204
Physical Location & Seq
Forward (+)
15419083 .. 15420112
1030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0184300.1

Sequence Viewer

Length: 741 bp
ATGACATCTTCAAATGCAAGCACAATTTTCTTCTTGTCGACTCGGTTGAGTTTTGGGAGATTAAAAATAGTGTCCTTCATGTTATATGCATACTCTTCCAATGCAAGCTTCGCCTCCAATCTCTTCCTGTTCTCCTCCAATGCAAGCTTCGCCTCCAAGAGCATCAATCTTGATGAAGCGGTTGCATATGGTGCGGCCGTACAAGCTGCAATTTTGAGCGTTGAGGGATGTATTGAGAAAGTTCAAGACTTGCTATTGTTGGATGTCACTCCACTTTCTCTTGGTTGCGAGGATTATAAAGGACATATGCGAGTTCCTGATATCAACATTTGCTTTGAGATTGATGCCAATGGAATCTTGATTGTCTCCACCGAGGAAAAATCAACAAATAATAAGAGCAAAATCACAATCACCAATAACAACAAAGACAGTTTATGCAAGGAGGAAATTGAGAAGATGGTCGATGAGGCAAAGAAGTACATGTCCGATGATGATGATTATAAGAAGAAAATGGAGGCTATGGTTGCATTAGAAAACTATGCAACCAACAAGATGGACACAGTTCATAATCGCTCAAACCTTAATCAAGAAGACAAGAAAAGAATTATGGATGCGGTTGAAAAAGTCCTTGAGTGGCTCGATGAGAATGAGAATCATCTTGCTGAATGTGAAGAATATGAGGATAAGCTGAGAAAGCTCGATAACTTGTGCAGTCCCATACTAAATGACATGAATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0098542 GO:0099402 GO:0140110 GO:1900367 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000068 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 CG-1 IQ TIG

Protein Analysis

246

Amino Acids

27.76

Weight (kDa)

4.71

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 51 - 103 2.5e-13 Hsp70 protein
HSP70 PF00012 105 - 244 6.6e-19 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 297, 501
AccI GTMKAC 1 cut(s) 38
AciI CCGC 3 cut(s) 179, 194, 614
AcoI YGGCCR 1 cut(s) 195
AfaI GTAC 2 cut(s) 201, 479
AflIII ACRYGT 1 cut(s) 480
AgsI TTSAA 3 cut(s) 12, 245, 620
AjuI GAANNNNNNNTTGG 4 cut(s) 92, 124, 131, 163
AluBI AGCT 5 cut(s) 108, 147, 206, 688, 697
AluI AGCT 5 cut(s) 108, 147, 206, 688, 697
Alw26I GTCTC 1 cut(s) 370
AoxI GGCC 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 403
BbsI GAAGAC 1 cut(s) 597
BbvI GCAGC 1 cut(s) 193
BccI CCATC 2 cut(s) 451, 547
BceAI ACGGC 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 370
BisI GCNGC 2 cut(s) 195, 207
BlsI GCNGC 2 cut(s) 196, 208
BmsI GCATC 3 cut(s) 171, 334, 601
BpiI GAAGAC 1 cut(s) 597
BpuEI CTTGAG 1 cut(s) 650
BsaJI CCNNGG 1 cut(s) 372
BseDI CCNNGG 1 cut(s) 372
BseGI GGATG 3 cut(s) 233, 268, 616
BseMII CTCAG 1 cut(s) 680
BseRI GAGGAG 1 cut(s) 124
BseX3I CGGCCG 1 cut(s) 195
BseXI GCAGC 1 cut(s) 193
BsgI GTGCAG 1 cut(s) 730
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 1 cut(s) 197
BsiEI CGRYCG 1 cut(s) 198
BslFI GGGAC 1 cut(s) 699
BsmAI GTCTC 1 cut(s) 370
BsmFI GGGAC 1 cut(s) 699
BsnI GGCC 1 cut(s) 197
BspACI CCGC 3 cut(s) 179, 194, 614
BspANI GGCC 1 cut(s) 197
BspCNI CTCAG 1 cut(s) 681
BssECI CCNNGG 1 cut(s) 372
Bst4CI ACNGT 2 cut(s) 431, 562
Bst6I CTCTTC 2 cut(s) 100, 128
BstAPI GCANNNNNTGC 1 cut(s) 191
BstC8I GCNNGC 3 cut(s) 19, 106, 145
BstDEI CTNAG 1 cut(s) 689
BstF5I GGATG 3 cut(s) 233, 268, 616
BstMAI GTCTC 1 cut(s) 370
BstMCI CGRYCG 1 cut(s) 198
BstMWI GCNNNNNNNGC 6 cut(s) 110, 149, 191, 203, 524, 694
BstNSI RCATGY 1 cut(s) 484
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 597
BstXI CCANNNNNNTGG 1 cut(s) 553
BstZI CGGCCG 1 cut(s) 195
BsuRI GGCC 1 cut(s) 197
BtsCI GGATG 3 cut(s) 233, 268, 616
Cac8I GCNNGC 3 cut(s) 19, 106, 145
Csp6I GTAC 2 cut(s) 200, 478
CviAII CATG 3 cut(s) 79, 481, 730
CviJI RGCY 8 cut(s) 108, 147, 197, 206, 518, 637, 688, 697
CviKI_1 RGCY 8 cut(s) 108, 147, 197, 206, 518, 637, 688, 697
CviQI GTAC 2 cut(s) 200, 478
DdeI CTNAG 1 cut(s) 689
EaeI YGGCCR 1 cut(s) 195
EagI CGGCCG 1 cut(s) 195
Eam1104I CTCTTC 2 cut(s) 100, 128
EarI CTCTTC 2 cut(s) 100, 128
EclXI CGGCCG 1 cut(s) 195
Eco32I GATATC 1 cut(s) 322
Eco52I CGGCCG 1 cut(s) 195
EcoRV GATATC 1 cut(s) 322
EcoT22I ATGCAT 1 cut(s) 91
FaeI CATG 3 cut(s) 82, 484, 733
FaqI GGGAC 1 cut(s) 699
FatI CATG 3 cut(s) 78, 480, 729
FauNDI CATATG 2 cut(s) 187, 306
FblI GTMKAC 1 cut(s) 38
Fnu4HI GCNGC 2 cut(s) 195, 207
FokI GGATG 3 cut(s) 240, 275, 623
Fsp4HI GCNGC 2 cut(s) 195, 207
GluI GCNGC 2 cut(s) 195, 207
HaeIII GGCC 1 cut(s) 197
Hin1II CATG 3 cut(s) 82, 484, 733
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HindIII AAGCTT 2 cut(s) 106, 145
HinfI GANTC 3 cut(s) 40, 354, 652
HphI GGTGA 1 cut(s) 403
Hpy166II GTNNAC 1 cut(s) 39
Hpy188I TCNGA 1 cut(s) 487
Hpy188III TCNNGA 5 cut(s) 170, 245, 317, 358, 587
Hpy8I GTNNAC 1 cut(s) 39
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 2 cut(s) 431, 562
HpyF10VI GCNNNNNNNGC 6 cut(s) 110, 149, 191, 203, 524, 694
HpyF3I CTNAG 1 cut(s) 689
Hsp92II CATG 3 cut(s) 82, 484, 733
LpnPI CCDG 2 cut(s) 140, 330
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 3 cut(s) 171, 334, 601
MaeIII GTNAC 1 cut(s) 265
MboII GAAGA 7 cut(s) 22, 87, 115, 466, 517, 602, 683
MluCI AATT 4 cut(s) 24, 210, 447, 603
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 240
Mph1103I ATGCAT 1 cut(s) 91
MseI TTAA 2 cut(s) 62, 582
MwoI GCNNNNNNNGC 6 cut(s) 110, 149, 191, 203, 524, 694
NdeI CATATG 2 cut(s) 187, 306
NlaIII CATG 3 cut(s) 82, 484, 733
NmuCI GTSAC 1 cut(s) 265
NsiI ATGCAT 1 cut(s) 91
NspI RCATGY 1 cut(s) 484
PciI ACATGT 1 cut(s) 480
PfeI GAWTC 2 cut(s) 354, 652
PkrI GCNGC 2 cut(s) 196, 208
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PscI ACATGT 1 cut(s) 480
PsiI TTATAA 2 cut(s) 297, 501
RsaI GTAC 2 cut(s) 201, 479
RsaNI GTAC 2 cut(s) 200, 478
SalI GTCGAC 1 cut(s) 37
SaqAI TTAA 2 cut(s) 62, 582
SatI GCNGC 2 cut(s) 195, 207
SchI GAGTC 1 cut(s) 34
SetI ASST 6 cut(s) 110, 149, 208, 582, 690, 699
SfaNI GCATC 3 cut(s) 171, 334, 601
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 4 cut(s) 24, 210, 447, 603
SsiI CCGC 3 cut(s) 179, 194, 614
TaaI ACNGT 2 cut(s) 431, 562
TaqI TCGA 4 cut(s) 38, 462, 639, 699
TasI AATT 4 cut(s) 24, 210, 447, 603
TatI WGTACW 1 cut(s) 477
TauI GCSGC 1 cut(s) 197
TfiI GAWTC 2 cut(s) 354, 652
Tru1I TTAA 2 cut(s) 62, 582
Tru9I TTAA 2 cut(s) 62, 582
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 3 cut(s) 67, 189, 554
XceI RCATGY 1 cut(s) 484
XmiI GTMKAC 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.