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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2523, 2811 |
| AatII | GACGTC | 2 cut(s) | 3140, 3229 |
| Acc36I | ACCTGC | 5 cut(s) | 513, 3851, 3992, 4710, 4723 |
| AccB1I | GGYRCC | 1 cut(s) | 1973 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1504, 3528 |
| AccII | CGCG | 3 cut(s) | 3527, 3952, 4715 |
| AclWI | GGATC | 3 cut(s) | 2747, 3879, 3892 |
| AcoI | YGGCCR | 5 cut(s) | 1238, 1812, 3383, 3508, 3519 |
| AcuI | CTGAAG | 2 cut(s) | 556, 4898 |
| AcvI | CACGTG | 1 cut(s) | 3974 |
| AcyI | GRCGYC | 3 cut(s) | 2214, 3137, 3226 |
| AdeI | CACNNNGTG | 1 cut(s) | 4400 |
| AfaI | GTAC | 9 cut(s) | 527, 782, 1212, 2409, 2427, 2517, 3006, 3797, 4370 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 1504, 1945, 3493, 3517, 3528, 3601, 3876, 4551, 5223 |
| AflIII | ACRYGT | 4 cut(s) | 783, 3467, 4023, 4101 |
| AgeI | ACCGGT | 1 cut(s) | 2233 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1792, 2988 |
| AhlI | ACTAGT | 2 cut(s) | 88, 4334 |
| AjnI | CCWGG | 5 cut(s) | 2180, 2238, 3475, 4049, 4197 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 722, 754, 1352, 1384 |
| AleI | CACNNNNGTG | 3 cut(s) | 3470, 4318, 4320 |
| Alw21I | GWGCWC | 6 cut(s) | 1760, 3837, 3901, 4287, 4405, 4470 |
| Alw26I | GTCTC | 6 cut(s) | 201, 280, 2219, 3385, 4315, 4906 |
| Alw44I | GTGCAC | 2 cut(s) | 3897, 4401 |
| AlwI | GGATC | 3 cut(s) | 2747, 3879, 3892 |
| Ama87I | CYCGRG | 3 cut(s) | 1939, 3198, 3620 |
| AoxI | GGCC | 7 cut(s) | 835, 1109, 1238, 1812, 3383, 3508, 3519 |
| ApaLI | GTGCAC | 2 cut(s) | 3897, 4401 |
| ApeKI | GCWGC | 7 cut(s) | 402, 607, 674, 1304, 2005, 2189, 4215 |
| AseI | ATTAAT | 5 cut(s) | 45, 2999, 3770, 4598, 5072 |
| AsiGI | ACCGGT | 1 cut(s) | 2233 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2655, 3320 |
| AspLEI | GCGC | 5 cut(s) | 3527, 4192, 4517, 4557, 4715 |
| AspS9I | GGNCC | 3 cut(s) | 835, 1109, 2236 |
| AsuC2I | CCSGG | 1 cut(s) | 3852 |
| AsuNHI | GCTAGC | 1 cut(s) | 592 |
| AvaI | CYCGRG | 3 cut(s) | 1939, 3198, 3620 |
| AvaII | GGWCC | 1 cut(s) | 2236 |
| AxyI | CCTNAGG | 1 cut(s) | 2109 |
| BaeGI | GKGCMC | 3 cut(s) | 3901, 4405, 5099 |
| BalI | TGGCCA | 2 cut(s) | 1814, 3521 |
| BamHI | GGATCC | 1 cut(s) | 3884 |
| BanI | GGYRCC | 1 cut(s) | 1973 |
| BanII | GRGCYC | 2 cut(s) | 1760, 3837 |
| BauI | CACGAG | 2 cut(s) | 3994, 4230 |
| BbrPI | CACGTG | 1 cut(s) | 3974 |
| BbsI | GAAGAC | 4 cut(s) | 545, 1692, 3411, 3960 |
| Bbv12I | GWGCWC | 6 cut(s) | 1760, 3837, 3901, 4287, 4405, 4470 |
| BbvCI | CCTCAGC | 1 cut(s) | 1386 |
| BbvI | GCAGC | 7 cut(s) | 414, 619, 661, 1291, 2017, 2176, 4227 |
| BccI | CCATC | 9 cut(s) | 619, 1024, 2540, 4235, 4464, 4468, 4589, 4805, 4917 |
| BceAI | ACGGC | 4 cut(s) | 3382, 3395, 3437, 3495 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1503, 1537, 3980, 4014 |
| BciT130I | CCWGG | 5 cut(s) | 2182, 2240, 3477, 4051, 4199 |
| BciVI | GTATCC | 1 cut(s) | 121 |
| BclI | TGATCA | 3 cut(s) | 102, 1150, 1204 |
| BcnI | CCSGG | 1 cut(s) | 3852 |
| BcoDI | GTCTC | 6 cut(s) | 201, 280, 2219, 3385, 4315, 4906 |
| BcuI | ACTAGT | 2 cut(s) | 88, 4334 |
| BfmI | CTRYAG | 5 cut(s) | 303, 1250, 2620, 3045, 4738 |
| BfoI | RGCGCY | 1 cut(s) | 4558 |
| BfuAI | ACCTGC | 5 cut(s) | 513, 3851, 3992, 4710, 4723 |
| BfuI | GTATCC | 1 cut(s) | 121 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1058, 2186 |
| BlpI | GCTNAGC | 2 cut(s) | 518, 3743 |
| Bme1390I | CCNGG | 6 cut(s) | 2182, 2240, 3477, 3852, 4051, 4199 |
| Bme18I | GGWCC | 1 cut(s) | 2236 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1792, 2988 |
| BmeT110I | CYCGRG | 3 cut(s) | 1939, 3198, 3620 |
| BmgT120I | GGNCC | 3 cut(s) | 835, 1109, 2236 |
| BmiI | GGNNCC | 7 cut(s) | 1090, 1344, 1975, 2974, 3886, 3932, 3988 |
| BmrFI | CCNGG | 6 cut(s) | 2182, 2240, 3477, 3852, 4051, 4199 |
| BmrI | ACTGGG | 2 cut(s) | 842, 3958 |
| BmtI | GCTAGC | 1 cut(s) | 596 |
| BmuI | ACTGGG | 2 cut(s) | 842, 3958 |
| BpiI | GAAGAC | 4 cut(s) | 545, 1692, 3411, 3960 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 1334, 1366, 1471, 1503, 2313, 2345 |
| BpmI | CTGGAG | 2 cut(s) | 1807, 4181 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1386 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 518, 3743 |
| BpuEI | CTTGAG | 3 cut(s) | 1212, 2234, 5075 |
| BpuMI | CCSGG | 1 cut(s) | 3852 |
| BsaAI | YACGTR | 3 cut(s) | 784, 3974, 4070 |
| BsaHI | GRCGYC | 3 cut(s) | 2214, 3137, 3226 |
| BsaJI | CCNNGG | 9 cut(s) | 699, 1180, 1266, 1329, 1487, 3516, 3850, 4050, 4550 |
| BsaWI | WCCGGW | 3 cut(s) | 2233, 2410, 3398 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 4491, 4521 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 1504, 1945, 3493, 3517, 3528, 3601, 3876, 4551, 5223 |
| Bse118I | RCCGGY | 1 cut(s) | 2233 |
| Bse1I | ACTGG | 8 cut(s) | 837, 1244, 1815, 1824, 1975, 3325, 3964, 4322 |
| Bse21I | CCTNAGG | 1 cut(s) | 2109 |
| Bse3DI | GCAATG | 1 cut(s) | 2001 |
| BseBI | CCWGG | 5 cut(s) | 2182, 2240, 3477, 4051, 4199 |
| BseDI | CCNNGG | 9 cut(s) | 699, 1180, 1266, 1329, 1487, 3516, 3850, 4050, 4550 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 1504, 1945, 3493, 3517, 3528, 3601, 3876, 4551, 5223 |
| BseMI | GCAATG | 1 cut(s) | 2001 |
| BseMII | CTCAG | 9 cut(s) | 377, 509, 672, 735, 1377, 1469, 2037, 2387, 2787 |
| BseNI | ACTGG | 8 cut(s) | 837, 1244, 1815, 1824, 1975, 3325, 3964, 4322 |
| BseRI | GAGGAG | 6 cut(s) | 264, 380, 1810, 4549, 4558, 4723 |
| BseSI | GKGCMC | 3 cut(s) | 3901, 4405, 5099 |
| BseX3I | CGGCCG | 1 cut(s) | 3383 |
| BseXI | GCAGC | 7 cut(s) | 414, 619, 661, 1291, 2017, 2176, 4227 |
| BseYI | CCCAGC | 1 cut(s) | 3497 |
| BsgI | GTGCAG | 4 cut(s) | 1782, 3829, 4020, 4251 |
| Bsh1236I | CGCG | 3 cut(s) | 3527, 3952, 4715 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3386 |
| BshFI | GGCC | 7 cut(s) | 837, 1111, 1240, 1814, 3385, 3510, 3521 |
| BshNI | GGYRCC | 1 cut(s) | 1973 |
| BshTI | ACCGGT | 1 cut(s) | 2233 |
| BsiEI | CGRYCG | 1 cut(s) | 3386 |
| BsiHKAI | GWGCWC | 6 cut(s) | 1760, 3837, 3901, 4287, 4405, 4470 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1939, 3198, 3620 |
| BsiSI | CCGG | 6 cut(s) | 2234, 2411, 3386, 3399, 3852, 4016 |
| BslFI | GGGAC | 3 cut(s) | 909, 2976, 4887 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 1504, 1945, 3493, 3517, 3528, 3601, 3876, 4551, 5223 |
| BsmAI | GTCTC | 6 cut(s) | 201, 280, 2219, 3385, 4315, 4906 |
| BsmBI | CGTCTC | 1 cut(s) | 4906 |
| BsmFI | GGGAC | 3 cut(s) | 909, 2976, 4887 |
| BsmI | GAATGC | 1 cut(s) | 4077 |
| BsnI | GGCC | 7 cut(s) | 837, 1111, 1240, 1814, 3385, 3510, 3521 |
| BsoBI | CYCGRG | 3 cut(s) | 1939, 3198, 3620 |
| Bsp1286I | GDGCHC | 7 cut(s) | 1760, 3837, 3901, 4287, 4405, 4470, 5099 |
| Bsp143I | GATC | 8 cut(s) | 58, 102, 1150, 1204, 2739, 3131, 3884, 3976 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 518, 3743 |
| Bsp19I | CCATGG | 1 cut(s) | 4550 |
| BspANI | GGCC | 7 cut(s) | 837, 1111, 1240, 1814, 3385, 3510, 3521 |
| BspCNI | CTCAG | 9 cut(s) | 378, 510, 673, 734, 1378, 1470, 2038, 2386, 2786 |
| BspFNI | CGCG | 3 cut(s) | 3527, 3952, 4715 |
| BspHI | TCATGA | 1 cut(s) | 105 |
| BspLI | GGNNCC | 7 cut(s) | 1090, 1344, 1975, 2974, 3886, 3932, 3988 |
| BspMAI | CTGCAG | 1 cut(s) | 307 |
| BspMI | ACCTGC | 5 cut(s) | 513, 3851, 3992, 4710, 4723 |
| BspOI | GCTAGC | 1 cut(s) | 596 |
| BspPI | GGATC | 3 cut(s) | 2747, 3879, 3892 |
| BspQI | GCTCTTC | 1 cut(s) | 2339 |
| BspT107I | GGYRCC | 1 cut(s) | 1973 |
| BsrDI | GCAATG | 1 cut(s) | 2001 |
| BsrFI | RCCGGY | 1 cut(s) | 2233 |
| BsrI | ACTGG | 8 cut(s) | 837, 1244, 1815, 1824, 1975, 3325, 3964, 4322 |
| BssAI | RCCGGY | 1 cut(s) | 2233 |
| BssECI | CCNNGG | 9 cut(s) | 699, 1180, 1266, 1329, 1487, 3516, 3850, 4050, 4550 |
| BssMI | GATC | 8 cut(s) | 58, 102, 1150, 1204, 2739, 3131, 3884, 3976 |
| BssNI | GRCGYC | 3 cut(s) | 2214, 3137, 3226 |
| BssSI | CACGAG | 2 cut(s) | 3994, 4230 |
| BssT1I | CCWWGG | 5 cut(s) | 699, 1180, 1329, 3516, 4550 |
| Bst2BI | CACGAG | 2 cut(s) | 3994, 4230 |
| Bst2UI | CCWGG | 5 cut(s) | 2182, 2240, 3477, 4051, 4199 |
| Bst4CI | ACNGT | 8 cut(s) | 932, 1165, 2621, 2816, 3356, 3903, 4400, 4415 |
| Bst6I | CTCTTC | 5 cut(s) | 1568, 2339, 2721, 3086, 4531 |
| BstACI | GRCGYC | 3 cut(s) | 2214, 3137, 3226 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2198 |
| BstBAI | YACGTR | 3 cut(s) | 784, 3974, 4070 |
| BstC8I | GCNNGC | 9 cut(s) | 594, 1816, 1851, 1933, 2187, 2571, 3523, 4717, 4760 |
| BstDSI | CCRYGG | 2 cut(s) | 1266, 4550 |
| BstEII | GGTNACC | 2 cut(s) | 3460, 3944 |
| BstFNI | CGCG | 3 cut(s) | 3527, 3952, 4715 |
| BstH2I | RGCGCY | 1 cut(s) | 4558 |
| BstHHI | GCGC | 5 cut(s) | 3527, 4192, 4517, 4557, 4715 |
| BstKTI | GATC | 8 cut(s) | 61, 105, 1153, 1207, 2742, 3134, 3887, 3979 |
| BstMAI | GTCTC | 6 cut(s) | 201, 280, 2219, 3385, 4315, 4906 |
| BstMBI | GATC | 8 cut(s) | 58, 102, 1150, 1204, 2739, 3131, 3884, 3976 |
| BstMCI | CGRYCG | 1 cut(s) | 3386 |
| BstNI | CCWGG | 5 cut(s) | 2182, 2240, 3477, 4051, 4199 |
| BstNSI | RCATGY | 4 cut(s) | 1935, 3471, 3486, 4105 |
| BstPI | GGTNACC | 2 cut(s) | 3460, 3944 |
| BstSCI | CCNGG | 6 cut(s) | 2180, 2238, 3475, 3850, 4049, 4197 |
| BstSFI | CTRYAG | 5 cut(s) | 303, 1250, 2620, 3045, 4738 |
| BstSLI | GKGCMC | 3 cut(s) | 3901, 4405, 5099 |
| BstUI | CGCG | 3 cut(s) | 3527, 3952, 4715 |
| BstV1I | GCAGC | 7 cut(s) | 414, 619, 661, 1291, 2017, 2176, 4227 |
| BstV2I | GAAGAC | 4 cut(s) | 545, 1692, 3411, 3960 |
| BstX2I | RGATCY | 1 cut(s) | 3884 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1810, 4692 |
| BstYI | RGATCY | 1 cut(s) | 3884 |
| BstZI | CGGCCG | 1 cut(s) | 3383 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2109 |
| BsuI | GTATCC | 1 cut(s) | 121 |
| BsuRI | GGCC | 7 cut(s) | 837, 1111, 1240, 1814, 3385, 3510, 3521 |
| BtgI | CCRYGG | 2 cut(s) | 1266, 4550 |
| BtsI | GCAGTG | 3 cut(s) | 3017, 4874, 5097 |
| BveI | ACCTGC | 5 cut(s) | 513, 3851, 3992, 4710, 4723 |
| Cac8I | GCNNGC | 9 cut(s) | 594, 1816, 1851, 1933, 2187, 2571, 3523, 4717, 4760 |
| CciI | TCATGA | 1 cut(s) | 105 |
| CfoI | GCGC | 5 cut(s) | 3527, 4192, 4517, 4557, 4715 |
| Cfr10I | RCCGGY | 1 cut(s) | 2233 |
| Cfr13I | GGNCC | 3 cut(s) | 835, 1109, 2236 |
| CseI | GACGC | 3 cut(s) | 1782, 2203, 3813 |
| Csp6I | GTAC | 9 cut(s) | 526, 781, 1211, 2408, 2426, 2516, 3005, 3796, 4369 |
| CspAI | ACCGGT | 1 cut(s) | 2233 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1255, 1290 |
| CviQI | GTAC | 9 cut(s) | 526, 781, 1211, 2408, 2426, 2516, 3005, 3796, 4369 |
| DpnI | GATC | 8 cut(s) | 60, 104, 1152, 1206, 2741, 3133, 3886, 3978 |
| DpnII | GATC | 8 cut(s) | 58, 102, 1150, 1204, 2739, 3131, 3884, 3976 |
| DraI | TTTAAA | 7 cut(s) | 999, 1425, 2281, 2833, 3552, 3732, 4650 |
| DraIII | CACNNNGTG | 1 cut(s) | 4400 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1792, 2988 |
| EaeI | YGGCCR | 5 cut(s) | 1238, 1812, 3383, 3508, 3519 |
| EagI | CGGCCG | 1 cut(s) | 3383 |
| Eam1104I | CTCTTC | 5 cut(s) | 1568, 2339, 2721, 3086, 4531 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1792, 2988 |
| EarI | CTCTTC | 5 cut(s) | 1568, 2339, 2721, 3086, 4531 |
| Ecl136II | GAGCTC | 2 cut(s) | 1758, 3835 |
| EclXI | CGGCCG | 1 cut(s) | 3383 |
| Eco130I | CCWWGG | 5 cut(s) | 699, 1180, 1329, 3516, 4550 |
| Eco24I | GRGCYC | 2 cut(s) | 1760, 3837 |
| Eco32I | GATATC | 2 cut(s) | 2767, 4857 |
| Eco47I | GGWCC | 1 cut(s) | 2236 |
| Eco52I | CGGCCG | 1 cut(s) | 3383 |
| Eco53kI | GAGCTC | 2 cut(s) | 1758, 3835 |
| Eco57I | CTGAAG | 2 cut(s) | 556, 4898 |
| Eco72I | CACGTG | 1 cut(s) | 3974 |
| Eco81I | CCTNAGG | 1 cut(s) | 2109 |
| Eco88I | CYCGRG | 3 cut(s) | 1939, 3198, 3620 |
| Eco91I | GGTNACC | 2 cut(s) | 3460, 3944 |
| EcoICRI | GAGCTC | 2 cut(s) | 1758, 3835 |
| EcoO65I | GGTNACC | 2 cut(s) | 3460, 3944 |
| EcoRI | GAATTC | 2 cut(s) | 3339, 4637 |
| EcoRII | CCWGG | 5 cut(s) | 2180, 2238, 3475, 4049, 4197 |
| EcoRV | GATATC | 2 cut(s) | 2767, 4857 |
| EcoT14I | CCWWGG | 5 cut(s) | 699, 1180, 1329, 3516, 4550 |
| EcoT22I | ATGCAT | 4 cut(s) | 954, 1937, 3769, 3828 |
| EcoT38I | GRGCYC | 2 cut(s) | 1760, 3837 |
| ErhI | CCWWGG | 5 cut(s) | 699, 1180, 1329, 3516, 4550 |
| Esp3I | CGTCTC | 1 cut(s) | 4906 |
| FaqI | GGGAC | 3 cut(s) | 909, 2976, 4887 |
| FauI | CCCGC | 3 cut(s) | 3874, 3957, 5216 |
| FbaI | TGATCA | 3 cut(s) | 102, 1150, 1204 |
| FriOI | GRGCYC | 2 cut(s) | 1760, 3837 |
| GlaI | GCGC | 5 cut(s) | 3526, 4191, 4516, 4556, 4714 |
| GsaI | CCCAGC | 1 cut(s) | 3501 |
| GsuI | CTGGAG | 2 cut(s) | 1807, 4181 |
| HaeII | RGCGCY | 1 cut(s) | 4558 |
| HaeIII | GGCC | 7 cut(s) | 837, 1111, 1240, 1814, 3385, 3510, 3521 |
| HapII | CCGG | 6 cut(s) | 2234, 2411, 3386, 3399, 3852, 4016 |
| HgaI | GACGC | 3 cut(s) | 1782, 2203, 3813 |
| HhaI | GCGC | 5 cut(s) | 3527, 4192, 4517, 4557, 4715 |
| Hin1I | GRCGYC | 3 cut(s) | 2214, 3137, 3226 |
| Hin6I | GCGC | 5 cut(s) | 3525, 4190, 4515, 4555, 4713 |
| HinP1I | GCGC | 5 cut(s) | 3525, 4190, 4515, 4555, 4713 |
| HincII | GTYRAC | 3 cut(s) | 2302, 3040, 4422 |
| HindII | GTYRAC | 3 cut(s) | 2302, 3040, 4422 |
| HindIII | AAGCTT | 2 cut(s) | 2571, 3293 |
| HpaII | CCGG | 6 cut(s) | 2234, 2411, 3386, 3399, 3852, 4016 |
| Hpy99I | CGWCG | 4 cut(s) | 2219, 3139, 3231, 3381 |
| HpyCH4III | ACNGT | 8 cut(s) | 932, 1165, 2621, 2816, 3356, 3903, 4400, 4415 |
| HpyCH4IV | ACGT | 9 cut(s) | 750, 783, 1380, 2706, 3137, 3226, 3973, 4025, 4069 |
| HpySE526I | ACGT | 9 cut(s) | 750, 783, 1380, 2706, 3137, 3226, 3973, 4025, 4069 |
| Hsp92I | GRCGYC | 3 cut(s) | 2214, 3137, 3226 |
| HspAI | GCGC | 5 cut(s) | 3525, 4190, 4515, 4555, 4713 |
| Ksp22I | TGATCA | 3 cut(s) | 102, 1150, 1204 |
| Kzo9I | GATC | 8 cut(s) | 58, 102, 1150, 1204, 2739, 3131, 3884, 3976 |
| LguI | GCTCTTC | 1 cut(s) | 2339 |
| Lsp1109I | GCAGC | 7 cut(s) | 414, 619, 661, 1291, 2017, 2176, 4227 |
| MaeII | ACGT | 9 cut(s) | 750, 783, 1380, 2706, 3137, 3226, 3973, 4025, 4069 |
| MalI | GATC | 8 cut(s) | 60, 104, 1152, 1206, 2741, 3133, 3886, 3978 |
| MboI | GATC | 8 cut(s) | 58, 102, 1150, 1204, 2739, 3131, 3884, 3976 |
| MfeI | CAATTG | 1 cut(s) | 1353 |
| MflI | RGATCY | 1 cut(s) | 3884 |
| MhlI | GDGCHC | 7 cut(s) | 1760, 3837, 3901, 4287, 4405, 4470, 5099 |
| MlsI | TGGCCA | 2 cut(s) | 1814, 3521 |
| MluNI | TGGCCA | 2 cut(s) | 1814, 3521 |
| MmeI | TCCRAC | 4 cut(s) | 2590, 3958, 4014, 4808 |
| Mox20I | TGGCCA | 2 cut(s) | 1814, 3521 |
| Mph1103I | ATGCAT | 4 cut(s) | 954, 1937, 3769, 3828 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2655, 3320 |
| MscI | TGGCCA | 2 cut(s) | 1814, 3521 |
| Msp20I | TGGCCA | 2 cut(s) | 1814, 3521 |
| MspI | CCGG | 6 cut(s) | 2234, 2411, 3386, 3399, 3852, 4016 |
| MspR9I | CCNGG | 6 cut(s) | 2182, 2240, 3477, 3852, 4051, 4199 |
| MunI | CAATTG | 1 cut(s) | 1353 |
| Mva1269I | GAATGC | 1 cut(s) | 4077 |
| MvaI | CCWGG | 5 cut(s) | 2182, 2240, 3477, 4051, 4199 |
| MvnI | CGCG | 3 cut(s) | 3527, 3952, 4715 |
| NciI | CCSGG | 1 cut(s) | 3852 |
| NcoI | CCATGG | 1 cut(s) | 4550 |
| NdeII | GATC | 8 cut(s) | 58, 102, 1150, 1204, 2739, 3131, 3884, 3976 |
| NheI | GCTAGC | 1 cut(s) | 592 |
| NlaIV | GGNNCC | 7 cut(s) | 1090, 1344, 1975, 2974, 3886, 3932, 3988 |
| NmuCI | GTSAC | 9 cut(s) | 1727, 2870, 2921, 2980, 3615, 3944, 4009, 4699, 5004 |
| NsiI | ATGCAT | 4 cut(s) | 954, 1937, 3769, 3828 |
| NspI | RCATGY | 4 cut(s) | 1935, 3471, 3486, 4105 |
| OliI | CACNNNNGTG | 3 cut(s) | 3470, 4318, 4320 |
| PaeI | GCATGC | 1 cut(s) | 1935 |
| PaeR7I | CTCGAG | 1 cut(s) | 3620 |
| PagI | TCATGA | 1 cut(s) | 105 |
| PciI | ACATGT | 2 cut(s) | 3467, 4101 |
| PciSI | GCTCTTC | 1 cut(s) | 2339 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3131 |
| PctI | GAATGC | 1 cut(s) | 4077 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2655, 3320 |
| PfeI | GAWTC | 6 cut(s) | 235, 322, 1010, 1952, 2640, 5086 |
| PflFI | GACNNNGTC | 1 cut(s) | 2078 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1504, 3528 |
| PinAI | ACCGGT | 1 cut(s) | 2233 |
| PmaCI | CACGTG | 1 cut(s) | 3974 |
| PmlI | CACGTG | 1 cut(s) | 3974 |
| Ppu21I | YACGTR | 3 cut(s) | 784, 3974, 4070 |
| PscI | ACATGT | 2 cut(s) | 3467, 4101 |
| PshBI | ATTAAT | 5 cut(s) | 45, 2999, 3770, 4598, 5072 |
| PsiI | TTATAA | 2 cut(s) | 2523, 2811 |
| Psp124BI | GAGCTC | 2 cut(s) | 1760, 3837 |
| Psp6I | CCWGG | 5 cut(s) | 2180, 2238, 3475, 4049, 4197 |
| PspCI | CACGTG | 1 cut(s) | 3974 |
| PspEI | GGTNACC | 2 cut(s) | 3460, 3944 |
| PspFI | CCCAGC | 1 cut(s) | 3497 |
| PspGI | CCWGG | 5 cut(s) | 2180, 2238, 3475, 4049, 4197 |
| PspN4I | GGNNCC | 7 cut(s) | 1090, 1344, 1975, 2974, 3886, 3932, 3988 |
| PspPI | GGNCC | 3 cut(s) | 835, 1109, 2236 |
| PspXI | VCTCGAGB | 1 cut(s) | 3620 |
| PstI | CTGCAG | 1 cut(s) | 307 |
| PsuI | RGATCY | 1 cut(s) | 3884 |
| PsyI | GACNNNGTC | 1 cut(s) | 2078 |
| RsaI | GTAC | 9 cut(s) | 527, 782, 1212, 2409, 2427, 2517, 3006, 3797, 4370 |
| RsaNI | GTAC | 9 cut(s) | 526, 781, 1211, 2408, 2426, 2516, 3005, 3796, 4369 |
| SacI | GAGCTC | 2 cut(s) | 1760, 3837 |
| SapI | GCTCTTC | 1 cut(s) | 2339 |
| Sau3AI | GATC | 8 cut(s) | 58, 102, 1150, 1204, 2739, 3131, 3884, 3976 |
| Sau96I | GGNCC | 3 cut(s) | 835, 1109, 2236 |
| SbfI | CCTGCAGG | 1 cut(s) | 307 |
| ScrFI | CCNGG | 6 cut(s) | 2182, 2240, 3477, 3852, 4051, 4199 |
| SdaI | CCTGCAGG | 1 cut(s) | 307 |
| SduI | GDGCHC | 7 cut(s) | 1760, 3837, 3901, 4287, 4405, 4470, 5099 |
| SfcI | CTRYAG | 5 cut(s) | 303, 1250, 2620, 3045, 4738 |
| Sfr274I | CTCGAG | 1 cut(s) | 3620 |
| SinI | GGWCC | 1 cut(s) | 2236 |
| SlaI | CTCGAG | 1 cut(s) | 3620 |
| SmlI | CTYRAG | 4 cut(s) | 1227, 2249, 3620, 5090 |
| SmoI | CTYRAG | 4 cut(s) | 1227, 2249, 3620, 5090 |
| SpeI | ACTAGT | 2 cut(s) | 88, 4334 |
| SphI | GCATGC | 1 cut(s) | 1935 |
| Sse8387I | CCTGCAGG | 1 cut(s) | 307 |
| SspI | AATATT | 8 cut(s) | 581, 1003, 1399, 1606, 2598, 2931, 3416, 3441 |
| SstI | GAGCTC | 2 cut(s) | 1760, 3837 |
| StyD4I | CCNGG | 6 cut(s) | 2180, 2238, 3475, 3850, 4049, 4197 |
| StyI | CCWWGG | 5 cut(s) | 699, 1180, 1329, 3516, 4550 |
| TaaI | ACNGT | 8 cut(s) | 932, 1165, 2621, 2816, 3356, 3903, 4400, 4415 |
| TaiI | ACGT | 9 cut(s) | 753, 786, 1383, 2709, 3140, 3229, 3976, 4028, 4072 |
| TaqI | TCGA | 8 cut(s) | 1665, 2082, 3134, 3343, 3621, 4081, 4109, 4749 |
| TaqII | GACCGA | 1 cut(s) | 1803 |
| TatI | WGTACW | 2 cut(s) | 1210, 2515 |
| TauI | GCSGC | 4 cut(s) | 1094, 1240, 3385, 4520 |
| TfiI | GAWTC | 6 cut(s) | 235, 322, 1010, 1952, 2640, 5086 |
| TseFI | GTSAC | 9 cut(s) | 1727, 2870, 2921, 2980, 3615, 3944, 4009, 4699, 5004 |
| TseI | GCWGC | 7 cut(s) | 402, 607, 674, 1304, 2005, 2189, 4215 |
| Tsp45I | GTSAC | 9 cut(s) | 1727, 2870, 2921, 2980, 3615, 3944, 4009, 4699, 5004 |
| TspGWI | ACGGA | 6 cut(s) | 2795, 2878, 2901, 3233, 4453, 5003 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2078 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1504, 3528 |
| VneI | GTGCAC | 2 cut(s) | 3897, 4401 |
| VpaK11BI | GGWCC | 1 cut(s) | 2236 |
| VspI | ATTAAT | 5 cut(s) | 45, 2999, 3770, 4598, 5072 |
| XbaI | TCTAGA | 1 cut(s) | 3140 |
| XceI | RCATGY | 4 cut(s) | 1935, 3471, 3486, 4105 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3878 |
| XhoI | CTCGAG | 1 cut(s) | 3620 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2655, 3320 |
| ZraI | GACGTC | 2 cut(s) | 3138, 3227 |
| Zsp2I | ATGCAT | 4 cut(s) | 954, 1937, 3769, 3828 |