Rh2BG252600

calmodulin-binding transcription activator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001204
Physical Location & Seq
Reverse (-)
26059779 .. 26063772
3994 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG252600.1

Sequence Viewer

Length: 507 bp
ATGGCCGAATCACAGCGGCTATTAGATATTCACCAAACACTTCCAGATGCTAAAGATCGATGGCTAGGCCCTGGCGAAATATTTAAAATTCTTCAAAATTATAAAAAATATCCTATATGTTCAAGCCCTGGAGACAAGCCATATAGGCCGCCCGTTGGATCACTTTTTCTTGTCGACCGGAAGAAGGTGAAACATTATAAGAGGGATGGTCATAACTGGCAGAAGAAAAAAGATGGAAAGACATTGCAAGACGGCAGTGAGAAGCTCAAGGTTGGACATGTTTATAAGTTGCGCTGCTACTATGCCCTTGGAGAAGAAAATAAAAATTTGAAGAGACGCAGTTATTCGATGCTTGAAGGGGATCTCACACACATTGTTCTCGTCCACTACCGGGAAGAAGAGGTGCTGAATAGTTCAGAAGGGACATCAGCTTATATGCATGATGACATTTTCGCTGACCTCCCAGACATTGTACAGTTGCCGACATTAGCTCAGAACCAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000981 GO:0000982 GO:0001077 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010150 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070417 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090693 GO:0097159 GO:0097659 GO:0098542 GO:0099402 GO:0140110 GO:1900367 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000068 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_2 CG-1 IQ TIG

Protein Analysis

168

Amino Acids

19.5

Weight (kDa)

8.91

Isoelectric Point (pI)

59.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CG-1 PF03859 17 - 132 1.2e-38 CG-1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 102, 198, 285
AccI GTMKAC 1 cut(s) 174
AciI CCGC 2 cut(s) 16, 149
AclWI GGATC 2 cut(s) 166, 369
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 87, 325
AfaI GTAC 1 cut(s) 474
AfiI CCNNNNNNNGG 3 cut(s) 155, 184, 391
AflIII ACRYGT 1 cut(s) 277
AgsI TTSAA 4 cut(s) 95, 123, 331, 356
AjnI CCWGG 2 cut(s) 70, 127
AluBI AGCT 3 cut(s) 265, 431, 491
AluI AGCT 3 cut(s) 265, 431, 491
Alw26I GTCTC 2 cut(s) 126, 328
AlwI GGATC 2 cut(s) 166, 369
AoxI GGCC 3 cut(s) 3, 67, 146
ApeKI GCWGC 1 cut(s) 294
ApoI RAATTY 2 cut(s) 87, 325
AspLEI GCGC 1 cut(s) 294
AspS9I GGNCC 1 cut(s) 68
AsuC2I CCSGG 1 cut(s) 392
AsuHPI GGTGA 2 cut(s) 23, 199
BbvI GCAGC 1 cut(s) 281
BccI CCATC 3 cut(s) 54, 200, 227
BceAI ACGGC 1 cut(s) 268
BciT130I CCWGG 2 cut(s) 72, 129
BcnI CCSGG 1 cut(s) 392
BcoDI GTCTC 2 cut(s) 126, 328
BfaI CTAG 1 cut(s) 65
BglI GCCNNNNNGGC 1 cut(s) 145
BisI GCNGC 3 cut(s) 17, 149, 295
BlsI GCNGC 3 cut(s) 18, 150, 296
Bme1390I CCNGG 3 cut(s) 72, 129, 392
BmgT120I GGNCC 1 cut(s) 68
BmrFI CCNGG 3 cut(s) 72, 129, 392
BmsI GCATC 2 cut(s) 37, 339
BpmI CTGGAG 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 392
Bsa29I ATCGAT 1 cut(s) 58
BsaJI CCNNGG 3 cut(s) 70, 127, 307
BsaWI WCCGGW 1 cut(s) 177
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 184, 391
Bse1I ACTGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 242
BseBI CCWGG 2 cut(s) 72, 129
BseCI ATCGAT 1 cut(s) 58
BseDI CCNNGG 3 cut(s) 70, 127, 307
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 3 cut(s) 155, 184, 391
BseMI GCAATG 1 cut(s) 242
BseMII CTCAG 1 cut(s) 506
BseNI ACTGG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 281
Bsh1285I CGRYCG 1 cut(s) 178
BshFI GGCC 3 cut(s) 5, 69, 148
BshVI ATCGAT 1 cut(s) 58
BsiEI CGRYCG 1 cut(s) 178
BsiSI CCGG 2 cut(s) 178, 391
BslFI GGGAC 1 cut(s) 436
BslI CCNNNNNNNGG 3 cut(s) 155, 184, 391
BsmAI GTCTC 2 cut(s) 126, 328
BsmBI CGTCTC 1 cut(s) 328
BsmFI GGGAC 1 cut(s) 436
BsnI GGCC 3 cut(s) 5, 69, 148
Bsp1407I TGTACA 1 cut(s) 472
Bsp143I GATC 3 cut(s) 55, 158, 361
BspACI CCGC 2 cut(s) 16, 149
BspANI GGCC 3 cut(s) 5, 69, 148
BspCNI CTCAG 1 cut(s) 505
BspDI ATCGAT 1 cut(s) 58
BspPI GGATC 2 cut(s) 166, 369
BsrDI GCAATG 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 472
BsrI ACTGG 1 cut(s) 221
BssECI CCNNGG 3 cut(s) 70, 127, 307
BssMI GATC 3 cut(s) 55, 158, 361
BssT1I CCWWGG 1 cut(s) 307
Bst2UI CCWGG 2 cut(s) 72, 129
Bst4CI ACNGT 1 cut(s) 477
Bst6I CTCTTC 2 cut(s) 326, 393
BstAUI TGTACA 1 cut(s) 472
BstDEI CTNAG 1 cut(s) 492
BstF5I GGATG 1 cut(s) 211
BstHHI GCGC 1 cut(s) 294
BstKTI GATC 3 cut(s) 58, 161, 364
BstMAI GTCTC 2 cut(s) 126, 328
BstMBI GATC 3 cut(s) 55, 158, 361
BstMCI CGRYCG 1 cut(s) 178
BstMWI GCNNNNNNNGC 1 cut(s) 145
BstNI CCWGG 2 cut(s) 72, 129
BstNSI RCATGY 1 cut(s) 281
BstSCI CCNGG 3 cut(s) 70, 127, 390
BstV1I GCAGC 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
Bsu15I ATCGAT 1 cut(s) 58
BsuRI GGCC 3 cut(s) 5, 69, 148
BsuTUI ATCGAT 1 cut(s) 58
BtsCI GGATG 1 cut(s) 211
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 262
CfoI GCGC 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 68
ClaI ATCGAT 1 cut(s) 58
CseI GACGC 1 cut(s) 345
Csp6I GTAC 1 cut(s) 473
CviAII CATG 2 cut(s) 278, 440
CviQI GTAC 1 cut(s) 473
DdeI CTNAG 1 cut(s) 492
DpnI GATC 3 cut(s) 57, 160, 363
DpnII GATC 3 cut(s) 55, 158, 361
DraI TTTAAA 1 cut(s) 85
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 326, 393
EarI CTCTTC 2 cut(s) 326, 393
Eco130I CCWWGG 1 cut(s) 307
EcoO109I RGGNCCY 1 cut(s) 68
EcoRII CCWGG 2 cut(s) 70, 127
EcoT14I CCWWGG 1 cut(s) 307
EcoT22I ATGCAT 1 cut(s) 441
ErhI CCWWGG 1 cut(s) 307
Esp3I CGTCTC 1 cut(s) 328
FaeI CATG 2 cut(s) 281, 443
FaqI GGGAC 1 cut(s) 436
FatI CATG 2 cut(s) 277, 439
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 3 cut(s) 17, 149, 295
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 3 cut(s) 17, 149, 295
FspBI CTAG 1 cut(s) 65
GlaI GCGC 1 cut(s) 293
GluI GCNGC 3 cut(s) 17, 149, 295
GsuI CTGGAG 1 cut(s) 150
HaeIII GGCC 3 cut(s) 5, 69, 148
HapII CCGG 2 cut(s) 178, 391
HgaI GACGC 1 cut(s) 345
HhaI GCGC 1 cut(s) 294
Hin1II CATG 2 cut(s) 281, 443
Hin6I GCGC 1 cut(s) 292
HinP1I GCGC 1 cut(s) 292
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 1 cut(s) 8
HpaII CCGG 2 cut(s) 178, 391
HphI GGTGA 2 cut(s) 23, 199
Hpy166II GTNNAC 2 cut(s) 175, 385
Hpy188I TCNGA 2 cut(s) 418, 495
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 2 cut(s) 175, 385
HpyAV CCTTC 3 cut(s) 178, 350, 413
HpyCH4III ACNGT 1 cut(s) 477
HpyCH4V TGCA 2 cut(s) 247, 439
HpyF10VI GCNNNNNNNGC 1 cut(s) 145
HpyF3I CTNAG 1 cut(s) 492
Hsp92II CATG 2 cut(s) 281, 443
HspAI GCGC 1 cut(s) 292
Kzo9I GATC 3 cut(s) 55, 158, 361
LpnPI CCDG 9 cut(s) 57, 57, 84, 114, 141, 191, 202, 404, 477
Lsp1109I GCAGC 1 cut(s) 281
LweI GCATC 2 cut(s) 37, 339
MaeI CTAG 1 cut(s) 65
MalI GATC 3 cut(s) 57, 160, 363
MboI GATC 3 cut(s) 55, 158, 361
MboII GAAGA 7 cut(s) 83, 193, 235, 326, 343, 407, 410
MflI RGATCY 1 cut(s) 361
MluCI AATT 3 cut(s) 87, 97, 325
MmeI TCCRAC 2 cut(s) 136, 253
MnlI CCTC 3 cut(s) 195, 394, 470
Mph1103I ATGCAT 1 cut(s) 441
MseI TTAA 1 cut(s) 84
MspA1I CMGCKG 1 cut(s) 16
MspI CCGG 2 cut(s) 178, 391
MspR9I CCNGG 3 cut(s) 72, 129, 392
MvaI CCWGG 2 cut(s) 72, 129
MwoI GCNNNNNNNGC 1 cut(s) 145
NciI CCSGG 1 cut(s) 392
NdeII GATC 3 cut(s) 55, 158, 361
NlaIII CATG 2 cut(s) 281, 443
NsiI ATGCAT 1 cut(s) 441
NspI RCATGY 1 cut(s) 281
PciI ACATGT 1 cut(s) 277
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 3 cut(s) 18, 150, 296
PscI ACATGT 1 cut(s) 277
PsiI TTATAA 3 cut(s) 102, 198, 285
Psp6I CCWGG 2 cut(s) 70, 127
PspGI CCWGG 2 cut(s) 70, 127
PspPI GGNCC 1 cut(s) 68
PsuI RGATCY 1 cut(s) 361
RsaI GTAC 1 cut(s) 474
RsaNI GTAC 1 cut(s) 473
SalI GTCGAC 1 cut(s) 173
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 3 cut(s) 17, 149, 295
Sau3AI GATC 3 cut(s) 55, 158, 361
Sau96I GGNCC 1 cut(s) 68
ScrFI CCNGG 3 cut(s) 72, 129, 392
SetI ASST 7 cut(s) 189, 267, 273, 405, 433, 462, 493
SfaNI GCATC 2 cut(s) 37, 339
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 3 cut(s) 87, 97, 325
SsiI CCGC 2 cut(s) 16, 149
SspI AATATT 1 cut(s) 81
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 3 cut(s) 70, 127, 390
StyI CCWWGG 1 cut(s) 307
TaaI ACNGT 1 cut(s) 477
TaqI TCGA 3 cut(s) 58, 174, 347
TasI AATT 3 cut(s) 87, 97, 325
TatI WGTACW 1 cut(s) 472
TauI GCSGC 2 cut(s) 19, 151
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 1 cut(s) 262
TseI GCWGC 1 cut(s) 294
TspRI CASTG 1 cut(s) 262
XapI RAATTY 2 cut(s) 87, 325
XceI RCATGY 1 cut(s) 281
XmiI GTMKAC 1 cut(s) 174
XspI CTAG 1 cut(s) 65
Zsp2I ATGCAT 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.