Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001204

Physical Location & Seq

Genomic Coordinates Reverse (-)

20063335 .. 20071577

Gene Structure 8243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG209600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAGGCCGCCGACGTTCCGGCCATGACGATCACACCGCTGTCACCCATTCTCTCCCATTCTCTTTTTGCGTTCAGAAAGAGGCTCCCCTCAGTATCTCTGGCAACGATCCGATTGGCTTCTCTCTGCCGAATAGAGGTAGTCCCAGTTGCATTGGTTGGTCTAATTCCTCTAGAGCTTTGTGGTTGCTCTGAAGATGGAAGGAGGTCAGAACTCCAAGATGCATTGCTCTTCCGTTCACCAAGGTTGTTGACACGCGCCTTCAAAAAATTCACACGAACAGGAAGTTTCTACATTCTAGGGTTTCTGCCTAGGGTAGCCACGGTTTCGCAATGTCGGCGACGAGCGCCGGAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.18

Weight (kDa)

10.38

Isoelectric Point (pI)

72.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001204)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09410 AT5G09410 AT5G09410 AT5G09410 AT5G64220 AT5G64220
fragaria_vesca	FvH4_5g27670 FvH4_5g27670 FvH4_5g27670 FvH4_5g27670
malus_domestica	MD05G1044600.v1.1 MD10G1051700.v1.1 MD12G1040100.v1.1 MD13G1144300.v1.1 MD16G1084000.v1.1 MD16G1139000.v1.1 MD16G1139200.v1.1
prunus_persica	Prupe.1G108700_v2.0.a1 Prupe.1G108700_v2.0.a1 Prupe.1G108700_v2.0.a1 Prupe.1G108700_v2.0.a1 Prupe.1G108700_v2.0.a1 Prupe.8G060300_v2.0.a1
pyrus_communis	pycom01g00940 pycom05g03720 pycom10g03650 pycom12g03420 pycom13g12490 pycom16g12350 pycom16g12360
rosa_chinensis	RchiOBHm_Chr2g0113081 RchiOBHm_Chr7g0219321
rosa_laevigata	RLG00000002297 RLG00000022767
rosa_multiflora	Rmu_sc0029995.1_g000002
rosa_roxburghii	Rroxscaffold_2G00129370 Rroxscaffold_3G00240090
rosa_rugosa	Rorug01G0154600.1 Rorug07G0184300
rosa_samantha	Rh2AG238800 Rh2AG238900 Rh2AG324900 Rh2BG252600 Rh2CG242800 Rh2CG242900 Rh2DG246800 Rh4BG352900 Rh5AG518400 Rh7AG327200 Rh7BG317200 Rh7CG344500 Rh7DG209600 Rh7DG322800
rosa_wichuraiana	Rw0G004510 Rw2G018730 Rw7G027570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	258
AciI	CCGC	2 cut(s)	9, 38
AclWI	GGATC	1 cut(s)	103
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	265
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
AlwI	GGATC	1 cut(s)	103
AoxI	GGCC	2 cut(s)	6, 21
ApoI	RAATTY	1 cut(s)	269
AspA2I	CCTAGG	1 cut(s)	311
AspLEI	GCGC	2 cut(s)	260, 349
AsuHPI	GGTGA	2 cut(s)	36, 231
AvrII	CCTAGG	1 cut(s)	311
BccI	CCATC	1 cut(s)	191
BfaI	CTAG	3 cut(s)	173, 299, 312
BfoI	RGCGCY	1 cut(s)	350
BisI	GCNGC	1 cut(s)	9
BlnI	CCTAGG	1 cut(s)	311
BlsI	GCNGC	1 cut(s)	10
BmiI	GGNNCC	2 cut(s)	86, 354
BmrI	ACTGGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	211
BmuI	ACTGGG	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	242, 311, 321
Bsc4I	CCNNNNNNNGG	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	146
Bse3DI	GCAATG	2 cut(s)	224, 338
BseDI	CCNNGG	3 cut(s)	242, 311, 321
BseLI	CCNNNNNNNGG	1 cut(s)	136
BseMI	GCAATG	2 cut(s)	224, 338
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	2 cut(s)	8, 23
BsiSI	CCGG	2 cut(s)	20, 350
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	2 cut(s)	8, 23
Bsp143I	GATC	2 cut(s)	30, 108
BspACI	CCGC	2 cut(s)	9, 38
BspANI	GGCC	2 cut(s)	8, 23
BspCNI	CTCAG	1 cut(s)	104
BspFNI	CGCG	1 cut(s)	258
BspLI	GGNNCC	2 cut(s)	86, 354
BspPI	GGATC	1 cut(s)	103
BspQI	GCTCTTC	1 cut(s)	236
BsrDI	GCAATG	2 cut(s)	224, 338
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	3 cut(s)	242, 311, 321
BssMI	GATC	2 cut(s)	30, 108
BssT1I	CCWWGG	2 cut(s)	242, 311
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	91
BstDSI	CCRYGG	1 cut(s)	321
BstFNI	CGCG	1 cut(s)	258
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	2 cut(s)	260, 349
BstKTI	GATC	2 cut(s)	33, 111
BstMBI	GATC	2 cut(s)	30, 108
BstMWI	GCNNNNNNNGC	2 cut(s)	337, 346
BstUI	CGCG	1 cut(s)	258
BsuRI	GGCC	2 cut(s)	8, 23
BtgI	CCRYGG	1 cut(s)	321
CfoI	GCGC	2 cut(s)	260, 349
CviAII	CATG	1 cut(s)	25
CviJI	RGCY	6 cut(s)	8, 23, 85, 119, 178, 320
CviKI_1	RGCY	6 cut(s)	8, 23, 85, 119, 178, 320
DdeI	CTNAG	1 cut(s)	91
DpnI	GATC	2 cut(s)	32, 110
DpnII	GATC	2 cut(s)	30, 108
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Eco130I	CCWWGG	2 cut(s)	242, 311
Eco57I	CTGAAG	1 cut(s)	213
EcoT14I	CCWWGG	2 cut(s)	242, 311
EcoT22I	ATGCAT	1 cut(s)	226
ErhI	CCWWGG	2 cut(s)	242, 311
FaeI	CATG	1 cut(s)	28
FaiI	YATR	1 cut(s)	26
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	3 cut(s)	173, 299, 312
GlaI	GCGC	2 cut(s)	259, 348
GluI	GCNGC	1 cut(s)	9
HaeII	RGCGCY	1 cut(s)	350
HaeIII	GGCC	2 cut(s)	8, 23
HapII	CCGG	2 cut(s)	20, 350
HhaI	GCGC	2 cut(s)	260, 349
Hin1II	CATG	1 cut(s)	28
Hin6I	GCGC	2 cut(s)	258, 347
HinP1I	GCGC	2 cut(s)	258, 347
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HpaII	CCGG	2 cut(s)	20, 350
HphI	GGTGA	2 cut(s)	36, 231
Hpy166II	GTNNAC	2 cut(s)	239, 252
Hpy188I	TCNGA	4 cut(s)	77, 113, 193, 211
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	2 cut(s)	239, 252
Hpy99I	CGWCG	2 cut(s)	17, 345
HpyAV	CCTTC	2 cut(s)	195, 271
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	152, 224
HpyF10VI	GCNNNNNNNGC	2 cut(s)	337, 346
HpyF3I	CTNAG	1 cut(s)	91
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	28
HspAI	GCGC	2 cut(s)	258, 347
Kzo9I	GATC	2 cut(s)	30, 108
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	1 cut(s)	90
LpnPI	CCDG	4 cut(s)	33, 86, 159, 267
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	3 cut(s)	173, 299, 312
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	42
MalI	GATC	2 cut(s)	32, 110
MboI	GATC	2 cut(s)	30, 108
MboII	GAAGA	2 cut(s)	206, 223
MluCI	AATT	2 cut(s)	165, 269
MnlI	CCTC	5 cut(s)	75, 100, 130, 180, 198
Mph1103I	ATGCAT	1 cut(s)	226
MseI	TTAA	1 cut(s)	358
MspA1I	CMGCKG	1 cut(s)	40
MspI	CCGG	2 cut(s)	20, 350
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	337, 346
NdeII	GATC	2 cut(s)	30, 108
NlaIII	CATG	1 cut(s)	28
NlaIV	GGNNCC	2 cut(s)	86, 354
NmuCI	GTSAC	1 cut(s)	42
NsiI	ATGCAT	1 cut(s)	226
PciSI	GCTCTTC	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	10
PspN4I	GGNNCC	2 cut(s)	86, 354
SapI	GCTCTTC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	358
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	30, 108
SetI	ASST	6 cut(s)	18, 141, 180, 209, 248, 358
SfaNI	GCATC	1 cut(s)	211
Sse9I	AATT	2 cut(s)	165, 269
SsiI	CCGC	2 cut(s)	9, 38
SspMI	CTAG	3 cut(s)	173, 299, 312
StyI	CCWWGG	2 cut(s)	242, 311
TaaI	ACNGT	1 cut(s)	325
TaiI	ACGT	1 cut(s)	18
TasI	AATT	2 cut(s)	165, 269
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	358
Tru9I	TTAA	1 cut(s)	358
TseFI	GTSAC	1 cut(s)	42
Tsp45I	GTSAC	1 cut(s)	42
TspGWI	ACGGA	1 cut(s)	224
XapI	RAATTY	1 cut(s)	269
XbaI	TCTAGA	1 cut(s)	172
XmaJI	CCTAGG	1 cut(s)	311
XspI	CTAG	3 cut(s)	173, 299, 312
Zsp2I	ATGCAT	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.