AT5G11970

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001531
Physical Location & Seq
Reverse (-)
3862849 .. 3863824
976 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G11970.1

Sequence Viewer

Length: 318 bp
ATGGAAGATTTCGGCCGTCAACGACCATACGGAGACGGAGGGATGCAGATCCAGCCTTACCACGGTAATCAAGGCGGTGATTTCAGGAGCTATAGCGCATCGTACGGGACGAGGGAGAACAATATATACGATGTGAAAAAGGAGAAATCGATAGCAAGATCCAAGTCTTGGGGAATAACGGATCCGGAGCTCCAGAGGAAGAAACGGGTCGCGAGTTATAAGATGTATGGTGTTGAAGGCAAAGTCAAAGGCTCTTTTAGAAACAGTTTCAGATGGCTTAAGCAGAGGTACACACAGGTCGTCTATGGTTGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

105

Amino Acids

12.38

Weight (kDa)

9.95

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 60 - 103 1.8e-25 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 219
AccB7I CCANNNNNTGG 1 cut(s) 168
AccII CGCG 1 cut(s) 212
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 1 cut(s) 75
AclWI GGATC 4 cut(s) 43, 153, 176, 189
AcoI YGGCCR 1 cut(s) 13
AfaI GTAC 2 cut(s) 104, 290
AfiI CCNNNNNNNGG 2 cut(s) 62, 168
AflII CTTAAG 1 cut(s) 278
AgsI TTSAA 1 cut(s) 236
AluBI AGCT 2 cut(s) 90, 190
AluI AGCT 2 cut(s) 90, 190
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 4 cut(s) 43, 153, 176, 189
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 1 cut(s) 13
AspLEI GCGC 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 89
BamHI GGATCC 1 cut(s) 181
BanII GRGCYC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 192
BccI CCATC 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 91
BfrI CTTAAG 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 183
BmsI GCATC 2 cut(s) 33, 107
BpmI CTGGAG 1 cut(s) 176
Bsa29I ATCGAT 1 cut(s) 149
BsaBI GATNNNNATC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 61
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 168
Bse8I GATNNNNATC 1 cut(s) 47
BseAI TCCGGA 1 cut(s) 184
BseCI ATCGAT 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 61
BseGI GGATG 1 cut(s) 48
BseJI GATNNNNATC 1 cut(s) 47
BseLI CCNNNNNNNGG 2 cut(s) 62, 168
BseX3I CGGCCG 1 cut(s) 13
Bsh1236I CGCG 1 cut(s) 212
Bsh1285I CGRYCG 1 cut(s) 16
BshFI GGCC 1 cut(s) 15
BshVI ATCGAT 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 1 cut(s) 185
BsiWI CGTACG 1 cut(s) 102
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 2 cut(s) 62, 168
BsmAI GTCTC 1 cut(s) 27
BsmBI CGTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 121
BsnI GGCC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 192
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 3 cut(s) 48, 158, 181
Bsp68I TCGCGA 1 cut(s) 212
BspACI CCGC 1 cut(s) 75
BspANI GGCC 1 cut(s) 15
BspDI ATCGAT 1 cut(s) 149
BspEI TCCGGA 1 cut(s) 184
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 1 cut(s) 183
BspPI GGATC 4 cut(s) 43, 153, 176, 189
BspTI CTTAAG 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 3 cut(s) 48, 158, 181
Bst4CI ACNGT 2 cut(s) 65, 266
BstAFI CTTAAG 1 cut(s) 278
BstDSI CCRYGG 1 cut(s) 61
BstF5I GGATG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 212
BstHHI GCGC 1 cut(s) 98
BstKTI GATC 3 cut(s) 51, 161, 184
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 3 cut(s) 48, 158, 181
BstMCI CGRYCG 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstSFI CTRYAG 1 cut(s) 91
BstUI CGCG 1 cut(s) 212
BstX2I RGATCY 3 cut(s) 48, 158, 181
BstYI RGATCY 3 cut(s) 48, 158, 181
BstZI CGGCCG 1 cut(s) 13
Bsu15I ATCGAT 1 cut(s) 149
BsuRI GGCC 1 cut(s) 15
BsuTUI ATCGAT 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 61
BtsCI GGATG 1 cut(s) 48
BtuMI TCGCGA 1 cut(s) 212
CfoI GCGC 1 cut(s) 98
ClaI ATCGAT 1 cut(s) 149
Csp6I GTAC 2 cut(s) 103, 289
CviJI RGCY 6 cut(s) 15, 55, 90, 190, 252, 277
CviKI_1 RGCY 6 cut(s) 15, 55, 90, 190, 252, 277
CviQI GTAC 2 cut(s) 103, 289
DpnI GATC 3 cut(s) 50, 160, 183
DpnII GATC 3 cut(s) 48, 158, 181
EaeI YGGCCR 1 cut(s) 13
EagI CGGCCG 1 cut(s) 13
Ecl136II GAGCTC 1 cut(s) 190
EclXI CGGCCG 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 192
Eco52I CGGCCG 1 cut(s) 13
Eco53kI GAGCTC 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 190
EcoT38I GRGCYC 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 27
FaiI YATR 7 cut(s) 28, 93, 125, 127, 219, 228, 306
FaqI GGGAC 1 cut(s) 121
FokI GGATG 1 cut(s) 55
FriOI GRGCYC 1 cut(s) 192
GlaI GCGC 1 cut(s) 97
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 1 cut(s) 15
HapII CCGG 1 cut(s) 185
HhaI GCGC 1 cut(s) 98
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HincII GTYRAC 1 cut(s) 20
HindII GTYRAC 1 cut(s) 20
HpaII CCGG 1 cut(s) 185
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 2 cut(s) 20, 291
Hpy188I TCNGA 1 cut(s) 272
Hpy188III TCNNGA 4 cut(s) 85, 185, 193, 211
Hpy8I GTNNAC 2 cut(s) 20, 291
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 2 cut(s) 65, 266
HpyCH4V TGCA 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HspAI GCGC 1 cut(s) 96
Kpn2I TCCGGA 1 cut(s) 184
Kzo9I GATC 3 cut(s) 48, 158, 181
LmnI GCTCC 3 cut(s) 87, 187, 195
LpnPI CCDG 5 cut(s) 65, 70, 198, 206, 281
LweI GCATC 2 cut(s) 33, 107
MalI GATC 3 cut(s) 50, 160, 183
MboI GATC 3 cut(s) 48, 158, 181
MboII GAAGA 2 cut(s) 17, 211
MflI RGATCY 3 cut(s) 48, 158, 181
MhlI GDGCHC 1 cut(s) 192
MnlI CCTC 4 cut(s) 32, 105, 189, 279
MroI TCCGGA 1 cut(s) 184
MseI TTAA 1 cut(s) 279
MspCI CTTAAG 1 cut(s) 278
MspI CCGG 1 cut(s) 185
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 52
NdeII GATC 3 cut(s) 48, 158, 181
NlaIV GGNNCC 1 cut(s) 183
NruI TCGCGA 1 cut(s) 212
PcsI WCGNNNNNNNCGW 1 cut(s) 107
Pfl23II CGTACG 1 cut(s) 102
PflMI CCANNNNNTGG 1 cut(s) 168
PsiI TTATAA 1 cut(s) 219
Psp124BI GAGCTC 1 cut(s) 192
PspLI CGTACG 1 cut(s) 102
PspN4I GGNNCC 1 cut(s) 183
PsrI GAACNNNNNNTAC 2 cut(s) 110, 142
PsuI RGATCY 3 cut(s) 48, 158, 181
RruI TCGCGA 1 cut(s) 212
RsaI GTAC 2 cut(s) 104, 290
RsaNI GTAC 2 cut(s) 103, 289
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 1 cut(s) 279
Sau3AI GATC 3 cut(s) 48, 158, 181
SduI GDGCHC 1 cut(s) 192
SetI ASST 4 cut(s) 92, 192, 290, 300
SfaNI GCATC 2 cut(s) 33, 107
SfcI CTRYAG 1 cut(s) 91
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SsiI CCGC 1 cut(s) 75
SstI GAGCTC 1 cut(s) 192
TaaI ACNGT 2 cut(s) 65, 266
TaqI TCGA 1 cut(s) 149
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TspGWI ACGGA 3 cut(s) 45, 51, 194
Van91I CCANNNNNTGG 1 cut(s) 168
Vha464I CTTAAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.