Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001531

Physical Location & Seq

Genomic Coordinates Reverse (-)

67526599 .. 67527760

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG501000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGATCTGCTGCAGCAATTTCTGAAGAAGCTTCGTTTTTCGGACAATGCTTACCAAAAGAAACCAATTAAGTCATGCTTGTCAGAACATGAGATGAATAAACATAAATTGCATTTCGGCATGGTACATGGAAGCAAGAGTTTCGCCAAGGAGAAACAGCTTTTGAAAGAGATCGAAGAGAGTAAACAGGAGGACAGTTTTGGTTCATTTTGGACTCAATTGAAAGAACGTCTTCGTGATTCTGAAAATAGTTGGTGTTGGCATCATTTGAAGCAGACCTGGTGGTTGCATCACCAGATCCCATTTTTGATCCATAAGAGAGATTCGGTGGAAGACCGTGAAGGAAATATCATAGAACTTGAACGGAGGATACAAGGATTGGATGTTGTACTGCAAAAGCATGGAGATGAAGCCATTACTAACAATACTGCTAAGGCTAATTTTTATGCTGTCAGTGGAAAAGCTTGGACTTCCTCGGGAGCAAAGAAAGCCTTACAGGAACAAGTTAAGCATGCTGTTGATGAAATAAATGAATTAAGGAAATCCCTTAATTCCTTATTAAAAAAAAAAAAAAGAATTAAGGAAATCCAAGTTGGCTATTGGGACAGAAATTGGACAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

24.51

Weight (kDa)

9.44

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11970
fragaria_vesca	FvH4_2g31530 FvH4_2g31540 FvH4_2g31541 FvH4_2g31550 FvH4_2g31590 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591
malus_domestica	MD08G1065000.v1.1 MD08G1065100.v1.1 MD08G1065200.v1.1 MD15G1056600.v1.1
prunus_persica	Prupe.1G409100_v2.0.a1 Prupe.1G409200_v2.0.a1
pyrus_communis	pycom08g05380 pycom08g05390 pycom15g05300
rosa_chinensis	RchiOBHm_Chr6g0311231
rosa_laevigata	RLG00000010424 RLG00000010425
rosa_multiflora	Rmu_sc0012046.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157850 Rroxscaffold_7G00157860 Rroxscaffold_7G00157870 Rroxscaffold_7G00157880
rosa_rugosa	Rorug06G0386700.1 Rorug06G0386800 Rorug06G0386800
rosa_samantha	Rh6AG500900 Rh6AG501000 Rh6AG501100 Rh6AG501200 Rh6BG511400 Rh6BG511500 Rh6BG511600 Rh6BG511700 Rh6BG511800 Rh6CG517200 Rh6CG517300 Rh6CG517400 Rh6CG517500 Rh6CG517700 Rh6DG503700 Rh6DG503800
rosa_wichuraiana	Rw6G043610 Rw6G043640 Rw6G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	12, 292, 304
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	2 cut(s)	126, 390
AgsI	TTSAA	4 cut(s)	166, 223, 271, 362
AjnI	CCWGG	1 cut(s)	278
AjuI	GAANNNNNNNTTGG	2 cut(s)	576, 608
AluBI	AGCT	4 cut(s)	31, 160, 464, 621
AluI	AGCT	4 cut(s)	31, 160, 464, 621
AlwI	GGATC	3 cut(s)	12, 292, 304
Ama87I	CYCGRG	1 cut(s)	475
ApeKI	GCWGC	2 cut(s)	10, 13
Asp700I	GAANNNNTTC	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	284
AvaI	CYCGRG	1 cut(s)	475
BbsI	GAAGAC	2 cut(s)	224, 339
BbvI	GCAGC	1 cut(s)	25
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BciT130I	CCWGG	1 cut(s)	280
BciVI	GTATCC	1 cut(s)	363
BfmI	CTRYAG	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	363
BisI	GCNGC	2 cut(s)	11, 14
BlsI	GCNGC	2 cut(s)	12, 15
Bme1390I	CCNGG	1 cut(s)	280
BmeT110I	CYCGRG	1 cut(s)	475
BmrFI	CCNGG	1 cut(s)	280
BmsI	GCATC	2 cut(s)	271, 298
BpiI	GAAGAC	2 cut(s)	224, 339
Bpu10I	CCTNAGC	1 cut(s)	432
BsaJI	CCNNGG	2 cut(s)	147, 474
BseBI	CCWGG	1 cut(s)	280
BseDI	CCNNGG	2 cut(s)	147, 474
BseGI	GGATG	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	25
BsiHKCI	CYCGRG	1 cut(s)	475
BslFI	GGGAC	1 cut(s)	617
BsmFI	GGGAC	1 cut(s)	617
BsoBI	CYCGRG	1 cut(s)	475
Bsp143I	GATC	4 cut(s)	4, 171, 297, 309
BspMAI	CTGCAG	1 cut(s)	15
BspPI	GGATC	3 cut(s)	12, 292, 304
BssECI	CCNNGG	2 cut(s)	147, 474
BssMI	GATC	4 cut(s)	4, 171, 297, 309
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	280
Bst4CI	ACNGT	2 cut(s)	197, 338
Bst6I	CTCTTC	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	1 cut(s)	432
BstF5I	GGATG	1 cut(s)	388
BstKTI	GATC	4 cut(s)	7, 174, 300, 312
BstMBI	GATC	4 cut(s)	4, 171, 297, 309
BstMWI	GCNNNNNNNGC	1 cut(s)	488
BstNI	CCWGG	1 cut(s)	280
BstNSI	RCATGY	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	278
BstSFI	CTRYAG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	25
BstV2I	GAAGAC	2 cut(s)	224, 339
BstX2I	RGATCY	2 cut(s)	4, 297
BstYI	RGATCY	2 cut(s)	4, 297
BsuI	GTATCC	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	460
Cac8I	GCNNGC	1 cut(s)	513
CsiI	ACCWGGT	1 cut(s)	278
Csp6I	GTAC	2 cut(s)	125, 389
CviAII	CATG	6 cut(s)	75, 89, 121, 128, 401, 512
CviJI	RGCY	8 cut(s)	31, 160, 413, 437, 464, 491, 597, 621
CviKI_1	RGCY	8 cut(s)	31, 160, 413, 437, 464, 491, 597, 621
CviQI	GTAC	2 cut(s)	125, 389
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	4 cut(s)	6, 173, 299, 311
DpnII	GATC	4 cut(s)	4, 171, 297, 309
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	44
Eco88I	CYCGRG	1 cut(s)	475
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	6 cut(s)	78, 92, 124, 131, 404, 515
FalI	AAGNNNNNCTT	6 cut(s)	62, 94, 216, 248, 476, 508
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	6 cut(s)	74, 88, 120, 127, 400, 511
Fnu4HI	GCNGC	2 cut(s)	11, 14
FokI	GGATG	1 cut(s)	395
Fsp4HI	GCNGC	2 cut(s)	11, 14
GluI	GCNGC	2 cut(s)	11, 14
Hin1II	CATG	6 cut(s)	78, 92, 124, 131, 404, 515
HindIII	AAGCTT	2 cut(s)	29, 462
HinfI	GANTC	3 cut(s)	214, 239, 323
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	4 cut(s)	24, 43, 85, 244
Hpy188III	TCNNGA	2 cut(s)	236, 477
Hpy8I	GTNNAC	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	2 cut(s)	197, 338
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	4 cut(s)	13, 112, 289, 394
HpyF10VI	GCNNNNNNNGC	1 cut(s)	488
HpyF3I	CTNAG	1 cut(s)	432
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	6 cut(s)	78, 92, 124, 131, 404, 515
Kzo9I	GATC	4 cut(s)	4, 171, 297, 309
LmnI	GCTCC	1 cut(s)	479
LpnPI	CCDG	5 cut(s)	173, 265, 292, 308, 482
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	2 cut(s)	271, 298
MabI	ACCWGGT	1 cut(s)	278
MaeII	ACGT	1 cut(s)	229
MalI	GATC	4 cut(s)	6, 173, 299, 311
MboI	GATC	4 cut(s)	4, 171, 297, 309
MboII	GAAGA	4 cut(s)	37, 188, 224, 344
MfeI	CAATTG	1 cut(s)	218
MflI	RGATCY	2 cut(s)	4, 297
MluCI	AATT	9 cut(s)	17, 66, 107, 218, 439, 533, 550, 576, 610
MlyI	GAGTC	1 cut(s)	208
MnlI	CCTC	3 cut(s)	184, 360, 484
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	6 cut(s)	69, 507, 536, 549, 560, 579
MslI	CAYNNNNRTG	1 cut(s)	405
MspR9I	CCNGG	1 cut(s)	280
MunI	CAATTG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	488
NdeII	GATC	4 cut(s)	4, 171, 297, 309
NlaIII	CATG	6 cut(s)	78, 92, 124, 131, 404, 515
NspI	RCATGY	1 cut(s)	515
PaeI	GCATGC	1 cut(s)	515
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	239, 323
PkrI	GCNGC	2 cut(s)	12, 15
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PsrI	GAACNNNNNNTAC	2 cut(s)	354, 386
PstI	CTGCAG	1 cut(s)	15
PsuI	RGATCY	2 cut(s)	4, 297
RsaI	GTAC	2 cut(s)	126, 390
RsaNI	GTAC	2 cut(s)	125, 389
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	6 cut(s)	69, 507, 536, 549, 560, 579
SatI	GCNGC	2 cut(s)	11, 14
Sau3AI	GATC	4 cut(s)	4, 171, 297, 309
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	280
SetI	ASST	6 cut(s)	33, 162, 232, 281, 466, 623
SexAI	ACCWGGT	1 cut(s)	278
SfaNI	GCATC	2 cut(s)	271, 298
SfcI	CTRYAG	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	405
SphI	GCATGC	1 cut(s)	515
Sse9I	AATT	9 cut(s)	17, 66, 107, 218, 439, 533, 550, 576, 610
StyD4I	CCNGG	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	197, 338
TaiI	ACGT	1 cut(s)	232
TaqI	TCGA	1 cut(s)	174
TasI	AATT	9 cut(s)	17, 66, 107, 218, 439, 533, 550, 576, 610
TatI	WGTACW	1 cut(s)	388
TfiI	GAWTC	2 cut(s)	239, 323
Tru1I	TTAA	6 cut(s)	69, 507, 536, 549, 560, 579
Tru9I	TTAA	6 cut(s)	69, 507, 536, 549, 560, 579
TscAI	CASTG	1 cut(s)	460
TseI	GCWGC	2 cut(s)	10, 13
TspDTI	ATGAA	5 cut(s)	110, 195, 423, 537, 546
TspGWI	ACGGA	1 cut(s)	379
TspRI	CASTG	1 cut(s)	460
XceI	RCATGY	1 cut(s)	515
XmnI	GAANNNNTTC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.