Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001531

Physical Location & Seq

Genomic Coordinates Forward (+)

35805037 .. 35805479

Gene Structure 443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G409100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGAAGACTACAGCAGATCAAAGTCATATGGCACTGGCAGTGGGACGATGCAGATGGAAAACTACTATGGACCTCCAAGACCACCCACTTCCTATGAGCTAAGGAGCTACAGTGTTTCTTATGCACAAACCCAGATGGCTAATAACAATAACAGGGACTTCAAGTTGAAGAAGGGAAAAAGCACTTCTGGTTCGTCCTCAAAGTCTAATTGGGGTCTCATGGACCCTGAGTTGCAGAGGAAGAAGAGGGTTGCTAGCTACAAAATGTACTCTGTGGAGGGCAAGATGAAGGGCTCCTTCAGGAAAAGCTTCAGGTGGCTTAAAGATAAGTGCACCCAAGTGGTTTATGGATGGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3511

Protein Analysis

120

Amino Acids

13.84

Weight (kDa)

9.93

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11970
fragaria_vesca	FvH4_2g31530 FvH4_2g31540 FvH4_2g31541 FvH4_2g31550 FvH4_2g31590 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591
malus_domestica	MD08G1065000.v1.1 MD08G1065100.v1.1 MD08G1065200.v1.1 MD15G1056600.v1.1
prunus_persica	Prupe.1G409100_v2.0.a1 Prupe.1G409200_v2.0.a1
pyrus_communis	pycom08g05380 pycom08g05390 pycom15g05300
rosa_chinensis	RchiOBHm_Chr6g0311231
rosa_laevigata	RLG00000010424 RLG00000010425
rosa_multiflora	Rmu_sc0012046.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157850 Rroxscaffold_7G00157860 Rroxscaffold_7G00157870 Rroxscaffold_7G00157880
rosa_rugosa	Rorug06G0386700.1 Rorug06G0386800 Rorug06G0386800
rosa_samantha	Rh6AG500900 Rh6AG501000 Rh6AG501100 Rh6AG501200 Rh6BG511400 Rh6BG511500 Rh6BG511600 Rh6BG511700 Rh6BG511800 Rh6CG517200 Rh6CG517300 Rh6CG517400 Rh6CG517500 Rh6CG517700 Rh6DG503700 Rh6DG503800
rosa_wichuraiana	Rw6G043610 Rw6G043640 Rw6G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	283, 295
AfaI	GTAC	1 cut(s)	269
AgsI	TTSAA	2 cut(s)	163, 169
AleI	CACNNNNGTG	1 cut(s)	338
AluBI	AGCT	4 cut(s)	100, 108, 258, 309
AluI	AGCT	4 cut(s)	100, 108, 258, 309
Alw21I	GWGCWC	1 cut(s)	335
Alw26I	GTCTC	1 cut(s)	221
Alw44I	GTGCAC	1 cut(s)	331
ApaLI	GTGCAC	1 cut(s)	331
Asp700I	GAANNNNTTC	1 cut(s)	308
AspS9I	GGNCC	2 cut(s)	71, 223
AsuNHI	GCTAGC	1 cut(s)	254
AvaII	GGWCC	2 cut(s)	71, 223
BaeGI	GKGCMC	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	12
Bbv12I	GWGCWC	1 cut(s)	335
BccI	CCATC	3 cut(s)	49, 130, 345
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	2 cut(s)	10, 109
Bme18I	GGWCC	2 cut(s)	71, 223
BmgT120I	GGNCC	2 cut(s)	71, 223
BmiI	GGNNCC	2 cut(s)	225, 295
BmsI	GCATC	1 cut(s)	39
BmtI	GCTAGC	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	12
Bpu10I	CCTNAGC	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bse1I	ACTGG	1 cut(s)	40
BseGI	GGATG	1 cut(s)	356
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	40
BseSI	GKGCMC	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	335
BslFI	GGGAC	2 cut(s)	58, 170
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	2 cut(s)	58, 170
Bso31I	GGTCTC	1 cut(s)	221
Bsp1286I	GDGCHC	2 cut(s)	296, 335
Bsp143I	GATC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	225, 295
BspOI	GCTAGC	1 cut(s)	258
BspTNI	GGTCTC	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	40
BssMI	GATC	1 cut(s)	17
Bst4CI	ACNGT	1 cut(s)	113
Bst6I	CTCTTC	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	2 cut(s)	101, 228
BstF5I	GGATG	1 cut(s)	356
BstKTI	GATC	1 cut(s)	20
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	17
BstSFI	CTRYAG	2 cut(s)	10, 109
BstSLI	GKGCMC	1 cut(s)	335
BstV2I	GAAGAC	1 cut(s)	12
BtsCI	GGATG	1 cut(s)	356
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	3 cut(s)	33, 46, 118
Cac8I	GCNNGC	1 cut(s)	256
Cfr13I	GGNCC	2 cut(s)	71, 223
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	7 cut(s)	100, 108, 140, 258, 294, 309, 319
CviKI_1	RGCY	7 cut(s)	100, 108, 140, 258, 294, 309, 319
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	2 cut(s)	101, 228
DpnI	GATC	1 cut(s)	19
DpnII	GATC	1 cut(s)	17
Eam1104I	CTCTTC	1 cut(s)	239
EarI	CTCTTC	1 cut(s)	239
Eco24I	GRGCYC	1 cut(s)	296
Eco31I	GGTCTC	1 cut(s)	221
Eco47I	GGWCC	2 cut(s)	71, 223
Eco57I	CTGAAG	2 cut(s)	283, 295
EcoT38I	GRGCYC	1 cut(s)	296
FaeI	CATG	1 cut(s)	223
FaiI	YATR	7 cut(s)	28, 30, 69, 96, 123, 221, 348
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FaqI	GGGAC	2 cut(s)	58, 170
FatI	CATG	1 cut(s)	219
FauNDI	CATATG	1 cut(s)	28
FriOI	GRGCYC	1 cut(s)	296
FspBI	CTAG	1 cut(s)	255
Hin1II	CATG	1 cut(s)	223
HindIII	AAGCTT	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	333
Hpy188III	TCNNGA	1 cut(s)	301
Hpy8I	GTNNAC	1 cut(s)	333
HpyAV	CCTTC	3 cut(s)	166, 283, 307
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4V	TGCA	4 cut(s)	52, 125, 235, 333
HpyF3I	CTNAG	2 cut(s)	101, 228
Hsp92II	CATG	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	17
LmnI	GCTCC	2 cut(s)	105, 299
LpnPI	CCDG	7 cut(s)	21, 139, 146, 174, 240, 286, 298
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	1 cut(s)	255
MalI	GATC	1 cut(s)	19
MboI	GATC	1 cut(s)	17
MboII	GAAGA	4 cut(s)	17, 181, 253, 256
MhlI	GDGCHC	2 cut(s)	296, 335
MluCI	AATT	1 cut(s)	208
MnlI	CCTC	5 cut(s)	84, 208, 231, 240, 271
MroXI	GAANNNNTTC	1 cut(s)	308
MseI	TTAA	1 cut(s)	321
MslI	CAYNNNNRTG	1 cut(s)	338
NdeI	CATATG	1 cut(s)	28
NdeII	GATC	1 cut(s)	17
NheI	GCTAGC	1 cut(s)	254
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	2 cut(s)	225, 295
OliI	CACNNNNGTG	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	308
PspN4I	GGNNCC	2 cut(s)	225, 295
PspPI	GGNCC	2 cut(s)	71, 223
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	321
Sau3AI	GATC	1 cut(s)	17
Sau96I	GGNCC	2 cut(s)	71, 223
SduI	GDGCHC	2 cut(s)	296, 335
SetI	ASST	6 cut(s)	76, 102, 110, 260, 311, 317
SfaNI	GCATC	1 cut(s)	39
SfcI	CTRYAG	2 cut(s)	10, 109
SinI	GGWCC	2 cut(s)	71, 223
SmiMI	CAYNNNNRTG	1 cut(s)	338
Sse9I	AATT	1 cut(s)	208
SspMI	CTAG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	113
TasI	AATT	1 cut(s)	208
TatI	WGTACW	1 cut(s)	267
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	3 cut(s)	40, 46, 118
TspDTI	ATGAA	1 cut(s)	302
TspRI	CASTG	3 cut(s)	40, 46, 118
VneI	GTGCAC	1 cut(s)	331
VpaK11BI	GGWCC	2 cut(s)	71, 223
XcmI	CCANNNNNNNNNTGG	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	308
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.