MD15G1056600.v1.1

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0001531
Physical Location & Seq
Forward (+)
3801987 .. 3802443
457 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1056600.v1.1.491

Sequence Viewer

Length: 381 bp
ATGGAAGAAGACTACAGCAGATCAAGGTCTTCGTACGGCGGCGGAGGGAATAATATGCAGGTGGTAAACTACTATGGTCGCCCAACGAGGCCGCCACCCACCACTTCCTCCTATGAGCTGAGGAGCTACAGTGCTTCATATGCACAAACCCAGATGGCTAATCATAATTATAACTACAACAACAGGGAGCTGAAAAAAGGGAAAAGCATTTCTGGGTCGTCTTCCAGTTGGGGGATCCTGGCTGATCCGGAGTTGCAGAGGAAGAAGAGGGTTGCGAGCTACAAGATGTATTCTGTGGAGGGGAAGATGAAGGGCTCGTTCAGGAAAAGCTTCAGGTGGCTTAAAGATAAGTACACCCAAGTGCTTTATGGCTGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

127

Amino Acids

14.65

Weight (kDa)

9.92

Isoelectric Point (pI)

59.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 81 - 124 3.8e-25 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 171
AarI CACCTGC 1 cut(s) 49
Acc36I ACCTGC 1 cut(s) 49
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 3 cut(s) 39, 42, 92
AclWI GGATC 3 cut(s) 229, 239, 242
AcuI CTGAAG 1 cut(s) 316
AfaI GTAC 2 cut(s) 35, 353
AfiI CCNNNNNNNGG 1 cut(s) 231
AjnI CCWGG 1 cut(s) 237
AleI CACNNNNGTG 1 cut(s) 359
AluBI AGCT 5 cut(s) 118, 126, 190, 279, 330
AluI AGCT 5 cut(s) 118, 126, 190, 279, 330
AlwI GGATC 3 cut(s) 229, 239, 242
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 329
BamHI GGATCC 1 cut(s) 234
BanII GRGCYC 1 cut(s) 317
BbsI GAAGAC 3 cut(s) 15, 21, 213
BbvCI CCTCAGC 1 cut(s) 119
BccI CCATC 1 cut(s) 148
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 239
BfmI CTRYAG 2 cut(s) 13, 127
BfuAI ACCTGC 1 cut(s) 49
BisI GCNGC 2 cut(s) 40, 92
BlsI GCNGC 2 cut(s) 41, 93
Bme1390I CCNGG 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 239
BpiI GAAGAC 3 cut(s) 15, 21, 213
Bpu10I CCTNAGC 1 cut(s) 119
BsaWI WCCGGW 1 cut(s) 247
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse1I ACTGG 1 cut(s) 225
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 231
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 1 cut(s) 225
BseRI GAGGAG 1 cut(s) 136
BshFI GGCC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 248
BsiWI CGTACG 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 231
BsnI GGCC 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 317
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 3 cut(s) 20, 234, 244
BspACI CCGC 3 cut(s) 39, 42, 92
BspANI GGCC 1 cut(s) 91
BspCNI CTCAG 1 cut(s) 111
BspEI TCCGGA 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 236
BspMI ACCTGC 1 cut(s) 49
BspPI GGATC 3 cut(s) 229, 239, 242
BsrI ACTGG 1 cut(s) 225
BssMI GATC 3 cut(s) 20, 234, 244
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 260
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 119
BstKTI GATC 3 cut(s) 23, 237, 247
BstMBI GATC 3 cut(s) 20, 234, 244
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 237
BstSFI CTRYAG 2 cut(s) 13, 127
BstV2I GAAGAC 3 cut(s) 15, 21, 213
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BsuRI GGCC 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 136
BveI ACCTGC 1 cut(s) 49
Cac8I GCNNGC 1 cut(s) 277
Csp6I GTAC 2 cut(s) 34, 352
CviQI GTAC 2 cut(s) 34, 352
DdeI CTNAG 1 cut(s) 119
DpnI GATC 3 cut(s) 22, 236, 246
DpnII GATC 3 cut(s) 20, 234, 244
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
EciI GGCGGA 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 317
FaiI YATR 8 cut(s) 56, 75, 114, 139, 141, 165, 171, 369
FauNDI CATATG 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 40, 92
FriOI GRGCYC 1 cut(s) 317
Fsp4HI GCNGC 2 cut(s) 40, 92
GluI GCNGC 2 cut(s) 40, 92
HaeIII GGCC 1 cut(s) 91
HapII CCGG 1 cut(s) 248
HindIII AAGCTT 1 cut(s) 328
HpaII CCGG 1 cut(s) 248
Hpy166II GTNNAC 2 cut(s) 67, 354
Hpy188III TCNNGA 2 cut(s) 248, 322
Hpy8I GTNNAC 2 cut(s) 67, 354
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 3 cut(s) 58, 143, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 119
Kpn2I TCCGGA 1 cut(s) 247
Kzo9I GATC 3 cut(s) 20, 234, 244
LmnI GCTCC 2 cut(s) 123, 187
MalI GATC 3 cut(s) 22, 236, 246
MboI GATC 3 cut(s) 20, 234, 244
MboII GAAGA 7 cut(s) 17, 20, 21, 213, 274, 277, 316
MflI RGATCY 1 cut(s) 234
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 1 cut(s) 166
MnlI CCTC 7 cut(s) 38, 81, 114, 118, 252, 261, 292
MroI TCCGGA 1 cut(s) 247
MroXI GAANNNNTTC 1 cut(s) 329
MseI TTAA 1 cut(s) 342
MslI CAYNNNNRTG 1 cut(s) 359
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 239
MvaI CCWGG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeI CATATG 1 cut(s) 139
NdeII GATC 3 cut(s) 20, 234, 244
NlaIV GGNNCC 1 cut(s) 236
OliI CACNNNNGTG 1 cut(s) 359
PaqCI CACCTGC 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 329
Pfl23II CGTACG 1 cut(s) 33
PkrI GCNGC 2 cut(s) 41, 93
PsiI TTATAA 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspLI CGTACG 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 236
PsuI RGATCY 1 cut(s) 234
RsaI GTAC 2 cut(s) 35, 353
RsaNI GTAC 2 cut(s) 34, 352
RseI CAYNNNNRTG 1 cut(s) 359
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 2 cut(s) 40, 92
Sau3AI GATC 3 cut(s) 20, 234, 244
ScrFI CCNGG 1 cut(s) 239
SduI GDGCHC 1 cut(s) 317
SetI ASST 8 cut(s) 29, 63, 120, 128, 192, 281, 332, 338
SfcI CTRYAG 2 cut(s) 13, 127
SmiMI CAYNNNNRTG 1 cut(s) 359
Sse9I AATT 1 cut(s) 166
SsiI CCGC 3 cut(s) 39, 42, 92
StyD4I CCNGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 131
TasI AATT 1 cut(s) 166
TatI WGTACW 1 cut(s) 351
TauI GCSGC 2 cut(s) 42, 94
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 1 cut(s) 136
TspDTI ATGAA 2 cut(s) 126, 323
TspRI CASTG 1 cut(s) 136
XcmI CCANNNNNNNNNTGG 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.