pycom15g05300

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0001531
Physical Location & Seq
Forward (+)
3179685 .. 3180074
390 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g05300.1

Sequence Viewer

Length: 390 bp
ATGGAAGAAGACTACAGCAGATCAAGGTCTTCGTACGGCGGCGGCGGAGGGAATAATATGCAGGTGGGAAACTACTATGGACGCCCAACGAGGCCGCCACCCACCACTTCCTCCTATGAGCTGAGGAGCTACAGTACTTCATATGCACAAACCCAGATGGCTAATCATAATTATAACTACAATAACAGGGAGATTAAACTGAAAAAAGGGAAAAGCATTTCTGGGTCGTCTTCCAGTTGGGGGATCCTGGCTGATCCGGAGTTGCAGAGGAAGAAGAGGGTTGCGAGCTACAAAATGTATTCTGTGGAGGGGAAGATGAAGGGCTCGTTCAGGAAAAGCTTCAGGTGGCTTAAAGATAAGTACACCCAAGTGCTTTATGGCTGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

130

Amino Acids

14.93

Weight (kDa)

9.96

Isoelectric Point (pI)

57.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 84 - 127 4e-25 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
AarI CACCTGC 1 cut(s) 52
Acc36I ACCTGC 1 cut(s) 52
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 4 cut(s) 39, 42, 45, 95
AclWI GGATC 3 cut(s) 238, 248, 251
AcuI CTGAAG 1 cut(s) 325
AcyI GRCGYC 1 cut(s) 82
AfaI GTAC 3 cut(s) 35, 136, 362
AfiI CCNNNNNNNGG 1 cut(s) 240
AjnI CCWGG 1 cut(s) 246
AleI CACNNNNGTG 1 cut(s) 368
AluBI AGCT 4 cut(s) 121, 129, 288, 339
AluI AGCT 4 cut(s) 121, 129, 288, 339
AlwI GGATC 3 cut(s) 238, 248, 251
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 1 cut(s) 92
Asp700I GAANNNNTTC 1 cut(s) 338
BamHI GGATCC 1 cut(s) 243
BanII GRGCYC 1 cut(s) 326
BbsI GAAGAC 3 cut(s) 15, 21, 222
BbvCI CCTCAGC 1 cut(s) 122
BccI CCATC 1 cut(s) 151
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 248
BfmI CTRYAG 2 cut(s) 13, 130
BfuAI ACCTGC 1 cut(s) 52
BisI GCNGC 3 cut(s) 40, 43, 95
BlsI GCNGC 3 cut(s) 41, 44, 96
BmcAI AGTACT 1 cut(s) 136
Bme1390I CCNGG 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 248
BpiI GAAGAC 3 cut(s) 15, 21, 222
Bpu10I CCTNAGC 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 118, 148
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse1I ACTGG 1 cut(s) 234
BseAI TCCGGA 1 cut(s) 256
BseBI CCWGG 1 cut(s) 248
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 139
BshFI GGCC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 257
BsiWI CGTACG 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 240
BsnI GGCC 1 cut(s) 94
Bsp1286I GDGCHC 1 cut(s) 326
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 3 cut(s) 20, 243, 253
BspACI CCGC 4 cut(s) 39, 42, 45, 95
BspANI GGCC 1 cut(s) 94
BspCNI CTCAG 1 cut(s) 114
BspEI TCCGGA 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 245
BspMI ACCTGC 1 cut(s) 52
BspPI GGATC 3 cut(s) 238, 248, 251
BsrI ACTGG 1 cut(s) 234
BssMI GATC 3 cut(s) 20, 243, 253
BssNI GRCGYC 1 cut(s) 82
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 134
Bst6I CTCTTC 1 cut(s) 269
BstACI GRCGYC 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 1 cut(s) 122
BstKTI GATC 3 cut(s) 23, 246, 256
BstMBI GATC 3 cut(s) 20, 243, 253
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 2 cut(s) 13, 130
BstV2I GAAGAC 3 cut(s) 15, 21, 222
BstX2I RGATCY 1 cut(s) 243
BstYI RGATCY 1 cut(s) 243
BsuRI GGCC 1 cut(s) 94
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 286
CseI GACGC 1 cut(s) 90
Csp6I GTAC 3 cut(s) 34, 135, 361
CviQI GTAC 3 cut(s) 34, 135, 361
DdeI CTNAG 1 cut(s) 122
DpnI GATC 3 cut(s) 22, 245, 255
DpnII GATC 3 cut(s) 20, 243, 253
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
EciI GGCGGA 1 cut(s) 60
Eco24I GRGCYC 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 326
FaiI YATR 8 cut(s) 59, 78, 117, 142, 144, 168, 174, 378
FauNDI CATATG 1 cut(s) 142
Fnu4HI GCNGC 3 cut(s) 40, 43, 95
FriOI GRGCYC 1 cut(s) 326
Fsp4HI GCNGC 3 cut(s) 40, 43, 95
GluI GCNGC 3 cut(s) 40, 43, 95
HaeIII GGCC 1 cut(s) 94
HapII CCGG 1 cut(s) 257
HgaI GACGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 337
HpaII CCGG 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 363
Hpy188III TCNNGA 2 cut(s) 257, 331
Hpy8I GTNNAC 1 cut(s) 363
HpyAV CCTTC 1 cut(s) 313
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4V TGCA 3 cut(s) 61, 146, 265
HpyF3I CTNAG 1 cut(s) 122
Hsp92I GRCGYC 1 cut(s) 82
Kpn2I TCCGGA 1 cut(s) 256
Kzo9I GATC 3 cut(s) 20, 243, 253
LmnI GCTCC 1 cut(s) 126
MalI GATC 3 cut(s) 22, 245, 255
MboI GATC 3 cut(s) 20, 243, 253
MboII GAAGA 7 cut(s) 17, 20, 21, 222, 283, 286, 325
MflI RGATCY 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 326
MluCI AATT 1 cut(s) 169
MnlI CCTC 7 cut(s) 41, 84, 117, 121, 261, 270, 301
MroI TCCGGA 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 338
MseI TTAA 2 cut(s) 195, 351
MslI CAYNNNNRTG 1 cut(s) 368
MspI CCGG 1 cut(s) 257
MspR9I CCNGG 1 cut(s) 248
MvaI CCWGG 1 cut(s) 248
NdeI CATATG 1 cut(s) 142
NdeII GATC 3 cut(s) 20, 243, 253
NlaIV GGNNCC 1 cut(s) 245
OliI CACNNNNGTG 1 cut(s) 368
PaqCI CACCTGC 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 338
Pfl23II CGTACG 1 cut(s) 33
PkrI GCNGC 3 cut(s) 41, 44, 96
PsiI TTATAA 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspLI CGTACG 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 245
PsuI RGATCY 1 cut(s) 243
RsaI GTAC 3 cut(s) 35, 136, 362
RsaNI GTAC 3 cut(s) 34, 135, 361
RseI CAYNNNNRTG 1 cut(s) 368
SaqAI TTAA 2 cut(s) 195, 351
SatI GCNGC 3 cut(s) 40, 43, 95
Sau3AI GATC 3 cut(s) 20, 243, 253
ScaI AGTACT 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 1 cut(s) 326
SetI ASST 7 cut(s) 29, 66, 123, 131, 290, 341, 347
SfcI CTRYAG 2 cut(s) 13, 130
SmiMI CAYNNNNRTG 1 cut(s) 368
Sse9I AATT 1 cut(s) 169
SsiI CCGC 4 cut(s) 39, 42, 45, 95
StyD4I CCNGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 134
TasI AATT 1 cut(s) 169
TatI WGTACW 2 cut(s) 134, 360
TauI GCSGC 3 cut(s) 42, 45, 97
Tru1I TTAA 2 cut(s) 195, 351
Tru9I TTAA 2 cut(s) 195, 351
TspDTI ATGAA 2 cut(s) 129, 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 338
ZrmI AGTACT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.