Rh6CG517300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001531
Physical Location & Seq
Reverse (-)
67444031 .. 67449592
5562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG517300.1

Sequence Viewer

Length: 768 bp
ATGGATCTGCTGCAGCAATTTCTGGAGAAGCTTCGTTTTTCGGACAATGCTTACCAAAAGAAACCAATCAAGTCATGCTTGTCAGAACAAGAGATGAATAAACATAAATTGCATTTCCGGATGGTACATGGAAGCAAGAGTTTCGCCAAGGAAAAGCAGCTTTTAAAAGAGATCAAAGTGAGTCAGCAGGAGGATAGTTTTGGTTCATTTTGGAATCAATTGGAAGAACGTCTTCGTGATTCTGAAAATAATCATCGAATTAACTCTGAATTGAAGTATTCTTTTCTACTAATATTATATATAGAACTTGAACGGAGGATACAAAGATTGGATGTTGTACTGCAAAAGCATGGAGATGAAGCCATTACTAATAATACTGCTAAGGCTAATTTTTATATTGTCAGTGGAAAAGCTTGGACTTCCTTGGGAGTAAAGAAAGCATTACAGGAGCAAGTTAAGCAGCATGCTGTTAATGAAATAAATGAATTAAGGAAATCCCAGTTGGCTATTGGGACAAAAATTGGACAAGCTGAGGGAGAACTGTTGGTCATGAAAAAAGATACCAAACCGTTGAGGGAGAAGTTGCCAGAGGAGAAGGGAAGCACGCCTATGCCTTTGGTCATGAAAAAAGATACCAAATTGTTGAGAGAGAAGTTGCCAGAGATAAATCAGATCGAGGAGAAGGGAAGCACGCCTATGCCTTTCCAAACTCCGAAACAACAGTCAAAAATCGAAAAAAAAAAATGGCAAGAAGCTGTCTCCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

29.69

Weight (kDa)

9.49

Isoelectric Point (pI)

49.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 117
AclWI GGATC 1 cut(s) 12
AfaI GTAC 2 cut(s) 126, 339
AgsI TTSAA 2 cut(s) 274, 311
AjuI GAANNNNNNNTTGG 2 cut(s) 485, 517
AluBI AGCT 6 cut(s) 31, 160, 413, 530, 755, 765
AluI AGCT 6 cut(s) 31, 160, 413, 530, 755, 765
Alw26I GTCTC 1 cut(s) 763
AlwI GGATC 1 cut(s) 12
Aor13HI TCCGGA 1 cut(s) 117
ApeKI GCWGC 4 cut(s) 10, 13, 157, 460
ArsI GACNNNNNNTTYG 2 cut(s) 707, 739
Asp700I GAANNNNTTC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 224
BbvCI CCTCAGC 1 cut(s) 531
BbvI GCAGC 3 cut(s) 25, 169, 472
BccI CCATC 1 cut(s) 115
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BciVI GTATCC 1 cut(s) 312
BcoDI GTCTC 1 cut(s) 763
BfmI CTRYAG 1 cut(s) 11
BfuI GTATCC 1 cut(s) 312
BisI GCNGC 4 cut(s) 11, 14, 158, 461
BlsI GCNGC 4 cut(s) 12, 15, 159, 462
BmrI ACTGGG 1 cut(s) 493
BmuI ACTGGG 1 cut(s) 493
BpiI GAAGAC 1 cut(s) 224
BpmI CTGGAG 2 cut(s) 44, 745
Bpu10I CCTNAGC 2 cut(s) 381, 531
BsaJI CCNNGG 2 cut(s) 147, 423
BsaWI WCCGGW 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 499
BseAI TCCGGA 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 147, 423
BseGI GGATG 2 cut(s) 126, 337
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 1 cut(s) 499
BseRI GAGGAG 2 cut(s) 605, 692
BseXI GCAGC 3 cut(s) 25, 169, 472
BsiSI CCGG 1 cut(s) 118
BslFI GGGAC 1 cut(s) 526
BsmAI GTCTC 1 cut(s) 763
BsmFI GGGAC 1 cut(s) 526
Bsp13I TCCGGA 1 cut(s) 117
Bsp143I GATC 3 cut(s) 4, 171, 672
BspCNI CTCAG 1 cut(s) 523
BspEI TCCGGA 1 cut(s) 117
BspHI TCATGA 2 cut(s) 549, 621
BspMAI CTGCAG 1 cut(s) 15
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 499
BssECI CCNNGG 2 cut(s) 147, 423
BssMI GATC 3 cut(s) 4, 171, 672
BssT1I CCWWGG 2 cut(s) 147, 423
Bst4CI ACNGT 3 cut(s) 543, 570, 723
BstC8I GCNNGC 3 cut(s) 465, 605, 692
BstDEI CTNAG 2 cut(s) 381, 531
BstF5I GGATG 2 cut(s) 126, 337
BstKTI GATC 3 cut(s) 7, 174, 675
BstMAI GTCTC 1 cut(s) 763
BstMBI GATC 3 cut(s) 4, 171, 672
BstMWI GCNNNNNNNGC 1 cut(s) 457
BstNSI RCATGY 1 cut(s) 467
BstSFI CTRYAG 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 25, 169, 472
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuI GTATCC 1 cut(s) 312
BtsCI GGATG 2 cut(s) 126, 337
BtsIMutI CAGTG 1 cut(s) 409
Cac8I GCNNGC 3 cut(s) 465, 605, 692
CciI TCATGA 2 cut(s) 549, 621
Csp6I GTAC 2 cut(s) 125, 338
CviAII CATG 6 cut(s) 75, 128, 350, 464, 550, 622
CviJI RGCY 9 cut(s) 31, 160, 362, 386, 413, 506, 530, 755, 765
CviKI_1 RGCY 9 cut(s) 31, 160, 362, 386, 413, 506, 530, 755, 765
CviQI GTAC 2 cut(s) 125, 338
DdeI CTNAG 2 cut(s) 381, 531
DpnI GATC 3 cut(s) 6, 173, 674
DpnII GATC 3 cut(s) 4, 171, 672
DraI TTTAAA 1 cut(s) 165
Eco130I CCWWGG 2 cut(s) 147, 423
EcoT14I CCWWGG 2 cut(s) 147, 423
ErhI CCWWGG 2 cut(s) 147, 423
FaeI CATG 6 cut(s) 78, 131, 353, 467, 553, 625
FalI AAGNNNNNCTT 4 cut(s) 62, 94, 216, 248
FaqI GGGAC 1 cut(s) 526
FatI CATG 6 cut(s) 74, 127, 349, 463, 549, 621
Fnu4HI GCNGC 4 cut(s) 11, 14, 158, 461
FokI GGATG 2 cut(s) 133, 344
Fsp4HI GCNGC 4 cut(s) 11, 14, 158, 461
GluI GCNGC 4 cut(s) 11, 14, 158, 461
GsuI CTGGAG 2 cut(s) 44, 745
HapII CCGG 1 cut(s) 118
Hin1II CATG 6 cut(s) 78, 131, 353, 467, 553, 625
HindIII AAGCTT 2 cut(s) 29, 411
HinfI GANTC 3 cut(s) 181, 214, 239
HpaII CCGG 1 cut(s) 118
Hpy188I TCNGA 6 cut(s) 43, 85, 244, 268, 672, 714
Hpy188III TCNNGA 5 cut(s) 23, 118, 236, 550, 622
HpyAV CCTTC 2 cut(s) 589, 676
HpyCH4III ACNGT 3 cut(s) 543, 570, 723
HpyCH4IV ACGT 1 cut(s) 229
HpyCH4V TGCA 3 cut(s) 13, 112, 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 457
HpyF3I CTNAG 2 cut(s) 381, 531
HpySE526I ACGT 1 cut(s) 229
Hsp92II CATG 6 cut(s) 78, 131, 353, 467, 553, 625
Kpn2I TCCGGA 1 cut(s) 117
Kzo9I GATC 3 cut(s) 4, 171, 672
LmnI GCTCC 1 cut(s) 448
LpnPI CCDG 7 cut(s) 8, 131, 173, 431, 512, 600, 672
Lsp1109I GCAGC 3 cut(s) 25, 169, 472
MaeII ACGT 1 cut(s) 229
MalI GATC 3 cut(s) 6, 173, 674
MboI GATC 3 cut(s) 4, 171, 672
MboII GAAGA 2 cut(s) 224, 236
MfeI CAATTG 1 cut(s) 218
MflI RGATCY 1 cut(s) 4
MluCI AATT 9 cut(s) 17, 107, 218, 258, 269, 388, 485, 519, 638
MlyI GAGTC 1 cut(s) 190
MnlI CCTC 6 cut(s) 184, 309, 526, 567, 583, 670
MroI TCCGGA 1 cut(s) 117
MroXI GAANNNNTTC 1 cut(s) 231
MseI TTAA 5 cut(s) 164, 261, 456, 471, 488
MslI CAYNNNNRTG 3 cut(s) 354, 608, 695
MspI CCGG 1 cut(s) 118
MunI CAATTG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 457
NdeII GATC 3 cut(s) 4, 171, 672
NlaIII CATG 6 cut(s) 78, 131, 353, 467, 553, 625
NspI RCATGY 1 cut(s) 467
PaeI GCATGC 1 cut(s) 467
PagI TCATGA 2 cut(s) 549, 621
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 2 cut(s) 214, 239
PkrI GCNGC 4 cut(s) 12, 15, 159, 462
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
PsrI GAACNNNNNNTAC 2 cut(s) 303, 335
PstI CTGCAG 1 cut(s) 15
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 2 cut(s) 126, 339
RsaNI GTAC 2 cut(s) 125, 338
RseI CAYNNNNRTG 3 cut(s) 354, 608, 695
SaqAI TTAA 5 cut(s) 164, 261, 456, 471, 488
SatI GCNGC 4 cut(s) 11, 14, 158, 461
Sau3AI GATC 3 cut(s) 4, 171, 672
SchI GAGTC 1 cut(s) 190
SetI ASST 7 cut(s) 33, 162, 232, 415, 532, 757, 767
SfcI CTRYAG 1 cut(s) 11
SmiMI CAYNNNNRTG 3 cut(s) 354, 608, 695
SphI GCATGC 1 cut(s) 467
Sse9I AATT 9 cut(s) 17, 107, 218, 258, 269, 388, 485, 519, 638
SspI AATATT 1 cut(s) 294
StyI CCWWGG 2 cut(s) 147, 423
TaaI ACNGT 3 cut(s) 543, 570, 723
TaiI ACGT 1 cut(s) 232
TaqI TCGA 3 cut(s) 256, 675, 732
TasI AATT 9 cut(s) 17, 107, 218, 258, 269, 388, 485, 519, 638
TatI WGTACW 1 cut(s) 337
TfiI GAWTC 2 cut(s) 214, 239
Tru1I TTAA 5 cut(s) 164, 261, 456, 471, 488
Tru9I TTAA 5 cut(s) 164, 261, 456, 471, 488
TscAI CASTG 1 cut(s) 409
TseI GCWGC 4 cut(s) 10, 13, 157, 460
TspDTI ATGAA 7 cut(s) 110, 195, 372, 489, 498, 566, 638
TspGWI ACGGA 1 cut(s) 328
TspRI CASTG 1 cut(s) 409
XceI RCATGY 1 cut(s) 467
XcmI CCANNNNNNNNNTGG 1 cut(s) 506
XmnI GAANNNNTTC 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.