Rroxscaffold_7G00157860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001531
Physical Location & Seq
Forward (+)
1551137 .. 1552543
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00157860.1

Sequence Viewer

Length: 984 bp
ATGGAGAAAGTGGATCCTAAATTAGAAGTCAAAATCAAAGAGGCTAAGAAGCTGATTGCAAAGATGGCTCAAGATAAACTTCAGTTCACTTATACATTAGAAGAAAAGATATTTGATCAGTTCTCTTTGGAGTCGTGGTTGCGATATCTGAATGCCCAGAAAGACCGTCTCAAATATTTATTGATCAAGGAGATGAAGAAAATGGATCTATTGCAAATGCTGGTAGACAAGATTCGTTGCACTGAAAACACCTACCACAAAAATTCAATTAAGGAATGCTTGTCAGCACAAGAAATGAATAATCATAAATTGCATTGCCAGATGGTACATGGAAGCAAGAGTTTGAGAAAGGAAAAGCAGCTTTTGGAAGATATGAAACTGAGTCAGCAGGAGGATAAGTTTGTTTCATTTTGGACTCAATTGGAAGAACAACTTGGAGTTTATCATGCTGATTGGCGCTTCGATCCAATGAAACAGATTTTGTTGTTGCATTACCAGATGCCAGTTTTGATCATTACAGGAGATGCAGTTAAAGACCGCATACTAGAATTCAGAGATCTTGAATGGAGAATACAAAGTTGTGGAGTTGTACTGCAAAATGAATATGAAGCCATTGCTATTAATAATGTGAATGGTAACTCTGCTGTGAAGGGAAAAACTTGGAGTCCTTTGGGTTCAAAAAAAGCCTTACAGGAGCAAGTTAAGGTTGCTGGTAAGAAAATAGATGAATTGAGAAAAACCCAATTGGCTCTTTGTCTTGGGAAAATAATTAGTCAAGTTGAGAGAGAATCAGAAGCCATGAAAAGGGGTATAGATTCATGGAGGAAGAAATTTCCAGAGTTAAATCAGAGGAAAGATAAATTGTATTTGCACTTTTTGAAACCCATAGATGAACAGCCATGTTCCATGAGGTACAAGTCACAACATTGCATTAGAACACAACTCATCACAGAACAATTTCATTACAATAATCCAACTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

327

Amino Acids

38.71

Weight (kDa)

9.18

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 225
AciI CCGC 1 cut(s) 538
AclWI GGATC 4 cut(s) 8, 21, 213, 458
AcsI RAATTY 3 cut(s) 262, 548, 830
AcuI CTGAAG 1 cut(s) 65
AfaI GTAC 3 cut(s) 327, 591, 914
AfiI CCNNNNNNNGG 1 cut(s) 804
AgsI TTSAA 4 cut(s) 267, 563, 678, 880
AjuI GAANNNNNNNTTGG 2 cut(s) 417, 449
AluBI AGCT 2 cut(s) 52, 361
AluI AGCT 2 cut(s) 52, 361
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 4 cut(s) 8, 21, 213, 458
ApeKI GCWGC 1 cut(s) 358
ApoI RAATTY 3 cut(s) 262, 548, 830
AseI ATTAAT 1 cut(s) 621
Asp700I GAANNNNTTC 1 cut(s) 957
AspLEI GCGC 1 cut(s) 459
BamHI GGATCC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 370
BccI CCATC 2 cut(s) 58, 316
BclI TGATCA 3 cut(s) 115, 183, 510
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 1 cut(s) 545
BfoI RGCGCY 1 cut(s) 460
BglII AGATCT 1 cut(s) 556
BisI GCNGC 1 cut(s) 359
BlsI GCNGC 1 cut(s) 360
BmiI GGNNCC 1 cut(s) 15
BmsI GCATC 2 cut(s) 489, 514
BpuEI CTTGAG 1 cut(s) 54
BsaXI ACNNNNNCTCC 6 cut(s) 122, 152, 383, 413, 513, 543
Bsc4I CCNNNNNNNGG 1 cut(s) 804
Bse1I ACTGG 1 cut(s) 503
Bse3DI GCAATG 3 cut(s) 313, 612, 925
BseLI CCNNNNNNNGG 1 cut(s) 804
BseMI GCAATG 3 cut(s) 313, 612, 925
BseMII CTCAG 1 cut(s) 371
BseNI ACTGG 1 cut(s) 503
BseXI GCAGC 1 cut(s) 370
BslI CCNNNNNNNGG 1 cut(s) 804
BsmAI GTCTC 1 cut(s) 173
BsmBI CGTCTC 1 cut(s) 173
BsmI GAATGC 2 cut(s) 157, 281
Bsp143I GATC 7 cut(s) 13, 115, 183, 205, 463, 510, 556
BspACI CCGC 1 cut(s) 538
BspCNI CTCAG 1 cut(s) 372
BspLI GGNNCC 1 cut(s) 15
BspPI GGATC 4 cut(s) 8, 21, 213, 458
BsrDI GCAATG 3 cut(s) 313, 612, 925
BsrI ACTGG 1 cut(s) 503
BssMI GATC 7 cut(s) 13, 115, 183, 205, 463, 510, 556
Bst4CI ACNGT 1 cut(s) 167
BstDEI CTNAG 2 cut(s) 45, 380
BstH2I RGCGCY 1 cut(s) 460
BstHHI GCGC 1 cut(s) 459
BstKTI GATC 7 cut(s) 16, 118, 186, 208, 466, 513, 559
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 7 cut(s) 13, 115, 183, 205, 463, 510, 556
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 370
BstX2I RGATCY 3 cut(s) 13, 205, 556
BstYI RGATCY 3 cut(s) 13, 205, 556
BtsIMutI CAGTG 1 cut(s) 240
CfoI GCGC 1 cut(s) 459
Csp6I GTAC 3 cut(s) 326, 590, 913
CviAII CATG 6 cut(s) 329, 446, 799, 819, 900, 907
CviJI RGCY 9 cut(s) 44, 52, 68, 361, 611, 686, 749, 797, 898
CviKI_1 RGCY 9 cut(s) 44, 52, 68, 361, 611, 686, 749, 797, 898
CviQI GTAC 3 cut(s) 326, 590, 913
DdeI CTNAG 2 cut(s) 45, 380
DpnI GATC 7 cut(s) 15, 117, 185, 207, 465, 512, 558
DpnII GATC 7 cut(s) 13, 115, 183, 205, 463, 510, 556
Eco32I GATATC 1 cut(s) 146
Eco57I CTGAAG 1 cut(s) 65
EcoRI GAATTC 1 cut(s) 548
EcoRV GATATC 1 cut(s) 146
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 6 cut(s) 332, 449, 802, 822, 903, 910
FalI AAGNNNNNCTT 6 cut(s) 63, 95, 263, 295, 417, 449
FatI CATG 6 cut(s) 328, 445, 798, 818, 899, 906
FbaI TGATCA 3 cut(s) 115, 183, 510
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 359
Fsp4HI GCNGC 1 cut(s) 359
FspBI CTAG 1 cut(s) 545
GlaI GCGC 1 cut(s) 458
GluI GCNGC 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 460
HhaI GCGC 1 cut(s) 459
Hin1II CATG 6 cut(s) 332, 449, 802, 822, 903, 910
Hin6I GCGC 1 cut(s) 457
HinP1I GCGC 1 cut(s) 457
HinfI GANTC 7 cut(s) 131, 232, 382, 415, 664, 788, 815
Hpy166II GTNNAC 2 cut(s) 87, 226
Hpy188I TCNGA 4 cut(s) 150, 554, 793, 849
Hpy188III TCNNGA 3 cut(s) 71, 560, 836
Hpy8I GTNNAC 2 cut(s) 87, 226
HpyAV CCTTC 1 cut(s) 643
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 9 cut(s) 59, 214, 240, 313, 490, 527, 595, 871, 930
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 2 cut(s) 45, 380
Hsp92II CATG 6 cut(s) 332, 449, 802, 822, 903, 910
HspAI GCGC 1 cut(s) 457
Ksp22I TGATCA 3 cut(s) 115, 183, 510
Kzo9I GATC 7 cut(s) 13, 115, 183, 205, 463, 510, 556
LmnI GCTCC 1 cut(s) 694
Lsp1109I GCAGC 1 cut(s) 370
LweI GCATC 2 cut(s) 489, 514
MaeI CTAG 1 cut(s) 545
MaeIII GTNAC 2 cut(s) 635, 918
MalI GATC 7 cut(s) 15, 117, 185, 207, 465, 512, 558
MboI GATC 7 cut(s) 13, 115, 183, 205, 463, 510, 556
MboII GAAGA 5 cut(s) 113, 208, 380, 437, 838
MfeI CAATTG 2 cut(s) 419, 743
MflI RGATCY 3 cut(s) 13, 205, 556
MlyI GAGTC 4 cut(s) 140, 391, 409, 673
MnlI CCTC 5 cut(s) 34, 385, 816, 843, 903
MroXI GAANNNNTTC 1 cut(s) 957
MseI TTAA 6 cut(s) 270, 531, 621, 702, 842, 982
MunI CAATTG 2 cut(s) 419, 743
Mva1269I GAATGC 2 cut(s) 157, 281
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 7 cut(s) 13, 115, 183, 205, 463, 510, 556
NlaIII CATG 6 cut(s) 332, 449, 802, 822, 903, 910
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 918
PctI GAATGC 2 cut(s) 157, 281
PdmI GAANNNNTTC 1 cut(s) 957
PfeI GAWTC 3 cut(s) 232, 788, 815
PkrI GCNGC 1 cut(s) 360
PleI GAGTC 4 cut(s) 139, 390, 409, 672
PpsI GAGTC 4 cut(s) 139, 390, 409, 672
PshBI ATTAAT 1 cut(s) 621
PspN4I GGNNCC 1 cut(s) 15
PsuI RGATCY 3 cut(s) 13, 205, 556
RsaI GTAC 3 cut(s) 327, 591, 914
RsaNI GTAC 3 cut(s) 326, 590, 913
SaqAI TTAA 6 cut(s) 270, 531, 621, 702, 842, 982
SatI GCNGC 1 cut(s) 359
Sau3AI GATC 7 cut(s) 13, 115, 183, 205, 463, 510, 556
SchI GAGTC 4 cut(s) 140, 391, 409, 673
SetI ASST 5 cut(s) 54, 254, 363, 708, 914
SfaNI GCATC 2 cut(s) 489, 514
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
SsiI CCGC 1 cut(s) 538
SspI AATATT 1 cut(s) 176
SspMI CTAG 1 cut(s) 545
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 462
TatI WGTACW 1 cut(s) 589
TfiI GAWTC 3 cut(s) 232, 788, 815
Tru1I TTAA 6 cut(s) 270, 531, 621, 702, 842, 982
Tru9I TTAA 6 cut(s) 270, 531, 621, 702, 842, 982
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 1 cut(s) 918
TseI GCWGC 1 cut(s) 358
Tsp45I GTSAC 1 cut(s) 918
TspRI CASTG 1 cut(s) 247
VspI ATTAAT 1 cut(s) 621
XapI RAATTY 3 cut(s) 262, 548, 830
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 957
XspI CTAG 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.