RLG00000010424

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001531
Physical Location & Seq
Forward (+)
1529864 .. 1549723
19860 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010424

Sequence Viewer

Length: 1191 bp
ATGGCTGACTATAACAGATCAAAGTCCTATGGTGGCAGTGGGACTATGCAGATGGATAACTACTATGGACCCCCAAGAGCACCACCCAGTTCTTATGAGATCAAGAGTTACAGTGTTTCCTATGCACAGGCCCCGATGGGGAATTATAATTACAACAACAGGGATTTGAAGAAGGAGAAGACTCATTCTAGGTCAAAGTCTTCTTCTTGGGCTCTGGCTGATCCTGAGTTGCAGAGGAAGAAGAGGGTTGCTAGCTACAAGATGTATTCTGTTGAAGGAAAGGTGAAGGGCTCCTTCAGAAACAGCTTCAGATGGCTTAAGGCAATTCGAAACATTGTGGAGAAAGTGGATCCTAAATTAGAAGTCAAAATCAAAGAGGCTAAGAAGCTGATTGCAAAGATGGCTCAAGATAAACTTCAGTTCACTTATACATTAGAAGAAAAGATATCTGAGCAGTGGTGTATTGAAAGTCGGTTGAGATATCTCAAAAGCCAGAAAGAGGAGCTCGAATCCTGTCTAAAATACAAGAGAAACAAAATGGATCTGCTGCAGCAATTTCTGGAGAAGCTTCGTTTTTCGGATAATGCTTACCAAAAGAAACCAATTAAGTCATGCTTGTCAGAACAAGAGATGAATAAACATAAATTGCATTTCCGGATGGTACATGGAAGCAAGAGTTTCGCCAAGGAAAAGCAGCTTTTAAAAGAGATCAAAGTGAGTCAGCAGGAGGAACATCATTTTGGAATCAATTGGAAGAACCAGACCTGGTGGTTGCATCACCAGATGCCATTTTCGATCTATAAGAGAGATTCGGTTGAAGACCGTGAAGGAAATATCATAGAACTTGAACGGAGGATACAAAGACTGGATGTTGTAGTGCAAAAGCATGGAGATGAAGCCATTACTAATAATACTGCTAAGGCTAATTTTTATACTGTCAGTGGAGAAGGTTGGACTTCCTTGGGAGTAAAGAAAGCATTACAGGAGCAAGTTAAGCATGCTGTTAATGAAATAAATGAACTAAGGAAATCCCAGTTGGCTATTGGGACAAAAATTGGACAAGCTGAGGGAGAACTGTTGGTCATGAAAAAAGAGACCAAACCGTTGAGGGAGAAGTTGCCAGAGATAAATCAGAGGAGAAGGGAAGCACGCCTATGCCTTTGGTCAAGAAAAAAGATACCAAATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

397

Amino Acids

46.58

Weight (kDa)

9.74

Isoelectric Point (pI)

50.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 73 - 108 1.3e-20 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 147
AccIII TCCGGA 1 cut(s) 654
AclWI GGATC 4 cut(s) 215, 344, 357, 549
AcuI CTGAAG 3 cut(s) 280, 292, 401
AfaI GTAC 1 cut(s) 663
AfiI CCNNNNNNNGG 2 cut(s) 138, 499
AflII CTTAAG 1 cut(s) 317
AgsI TTSAA 5 cut(s) 169, 275, 467, 818, 848
AjnI CCWGG 1 cut(s) 764
AjuI GAANNNNNNNTTGG 4 cut(s) 723, 755, 1019, 1051
AluBI AGCT 7 cut(s) 255, 306, 388, 505, 568, 697, 1064
AluI AGCT 7 cut(s) 255, 306, 388, 505, 568, 697, 1064
Alw21I GWGCWC 2 cut(s) 82, 507
Alw26I GTCTC 1 cut(s) 1088
AlwI GGATC 4 cut(s) 215, 344, 357, 549
Aor13HI TCCGGA 1 cut(s) 654
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 3 cut(s) 547, 550, 694
AspS9I GGNCC 2 cut(s) 68, 130
AsuHPI GGTGA 2 cut(s) 295, 770
AsuII TTCGAA 1 cut(s) 328
AsuNHI GCTAGC 1 cut(s) 251
AvaII GGWCC 1 cut(s) 68
BamHI GGATCC 1 cut(s) 349
BanII GRGCYC 3 cut(s) 214, 293, 507
BbsI GAAGAC 3 cut(s) 185, 192, 825
Bbv12I GWGCWC 2 cut(s) 82, 507
BbvCI CCTCAGC 1 cut(s) 1065
BbvI GCAGC 3 cut(s) 534, 562, 706
BccI CCATC 5 cut(s) 46, 130, 306, 394, 652
BcgI CGANNNNNNTGC 2 cut(s) 661, 695
BciT130I CCWGG 1 cut(s) 766
BciVI GTATCC 1 cut(s) 849
BcoDI GTCTC 1 cut(s) 1088
BfaI CTAG 2 cut(s) 189, 252
BfmI CTRYAG 1 cut(s) 548
BfrI CTTAAG 1 cut(s) 317
BfuI GTATCC 1 cut(s) 849
BisI GCNGC 3 cut(s) 548, 551, 695
BlsI GCNGC 3 cut(s) 549, 552, 696
Bme1390I CCNGG 1 cut(s) 766
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 68, 130
BmiI GGNNCC 4 cut(s) 70, 132, 292, 351
BmrFI CCNGG 1 cut(s) 766
BmrI ACTGGG 2 cut(s) 81, 1027
BmsI GCATC 2 cut(s) 774, 784
BmtI GCTAGC 1 cut(s) 255
BmuI ACTGGG 2 cut(s) 81, 1027
BpiI GAAGAC 3 cut(s) 185, 192, 825
BpmI CTGGAG 1 cut(s) 581
Bpu10I CCTNAGC 2 cut(s) 918, 1065
Bpu14I TTCGAA 1 cut(s) 328
BpuEI CTTGAG 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 1088
BsaJI CCNNGG 2 cut(s) 684, 960
BsaWI WCCGGW 1 cut(s) 654
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 499
Bse1I ACTGG 3 cut(s) 87, 870, 1033
BseAI TCCGGA 1 cut(s) 654
BseBI CCWGG 1 cut(s) 766
BseDI CCNNGG 2 cut(s) 684, 960
BseGI GGATG 2 cut(s) 663, 874
BseLI CCNNNNNNNGG 2 cut(s) 138, 499
BseMII CTCAG 3 cut(s) 216, 441, 1056
BseNI ACTGG 3 cut(s) 87, 870, 1033
BseRI GAGGAG 2 cut(s) 515, 1150
BseXI GCAGC 3 cut(s) 534, 562, 706
BshFI GGCC 1 cut(s) 131
BsiHKAI GWGCWC 2 cut(s) 82, 507
BsiSI CCGG 1 cut(s) 655
BslFI GGGAC 2 cut(s) 55, 1060
BslI CCNNNNNNNGG 2 cut(s) 138, 499
BsmAI GTCTC 1 cut(s) 1088
BsmFI GGGAC 2 cut(s) 55, 1060
BsnI GGCC 1 cut(s) 131
Bso31I GGTCTC 1 cut(s) 1088
Bsp119I TTCGAA 1 cut(s) 328
Bsp1286I GDGCHC 4 cut(s) 82, 214, 293, 507
Bsp13I TCCGGA 1 cut(s) 654
Bsp143I GATC 7 cut(s) 17, 99, 220, 349, 541, 708, 795
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 3 cut(s) 217, 442, 1057
BspEI TCCGGA 1 cut(s) 654
BspHI TCATGA 1 cut(s) 1083
BspLI GGNNCC 4 cut(s) 70, 132, 292, 351
BspMAI CTGCAG 1 cut(s) 552
BspOI GCTAGC 1 cut(s) 255
BspPI GGATC 4 cut(s) 215, 344, 357, 549
BspT104I TTCGAA 1 cut(s) 328
BspTI CTTAAG 1 cut(s) 317
BspTNI GGTCTC 1 cut(s) 1088
BsrI ACTGG 3 cut(s) 87, 870, 1033
BssECI CCNNGG 2 cut(s) 684, 960
BssMI GATC 7 cut(s) 17, 99, 220, 349, 541, 708, 795
BssT1I CCWWGG 2 cut(s) 684, 960
Bst2UI CCWGG 1 cut(s) 766
Bst4CI ACNGT 5 cut(s) 113, 824, 937, 1077, 1104
Bst6I CTCTTC 1 cut(s) 236
BstAFI CTTAAG 1 cut(s) 317
BstBI TTCGAA 1 cut(s) 328
BstC8I GCNNGC 3 cut(s) 253, 999, 1150
BstDEI CTNAG 6 cut(s) 225, 381, 450, 918, 1022, 1065
BstF5I GGATG 2 cut(s) 663, 874
BstKTI GATC 7 cut(s) 20, 102, 223, 352, 544, 711, 798
BstMAI GTCTC 1 cut(s) 1088
BstMBI GATC 7 cut(s) 17, 99, 220, 349, 541, 708, 795
BstMWI GCNNNNNNNGC 2 cut(s) 401, 994
BstNI CCWGG 1 cut(s) 766
BstNSI RCATGY 1 cut(s) 1001
BstSCI CCNGG 1 cut(s) 764
BstSFI CTRYAG 1 cut(s) 548
BstV1I GCAGC 3 cut(s) 534, 562, 706
BstV2I GAAGAC 3 cut(s) 185, 192, 825
BstX2I RGATCY 2 cut(s) 349, 541
BstYI RGATCY 2 cut(s) 349, 541
BsuI GTATCC 1 cut(s) 849
BsuRI GGCC 1 cut(s) 131
BtsCI GGATG 2 cut(s) 663, 874
BtsI GCAGTG 2 cut(s) 43, 461
BtsIMutI CAGTG 4 cut(s) 43, 118, 461, 946
Cac8I GCNNGC 3 cut(s) 253, 999, 1150
CciI TCATGA 1 cut(s) 1083
Cfr13I GGNCC 2 cut(s) 68, 130
CsiI ACCWGGT 1 cut(s) 764
Csp6I GTAC 1 cut(s) 662
CviAII CATG 5 cut(s) 612, 665, 887, 998, 1084
CviQI GTAC 1 cut(s) 662
DdeI CTNAG 6 cut(s) 225, 381, 450, 918, 1022, 1065
DpnI GATC 7 cut(s) 19, 101, 222, 351, 543, 710, 797
DpnII GATC 7 cut(s) 17, 99, 220, 349, 541, 708, 795
DraI TTTAAA 1 cut(s) 702
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Ecl136II GAGCTC 1 cut(s) 505
Eco130I CCWWGG 2 cut(s) 684, 960
Eco24I GRGCYC 3 cut(s) 214, 293, 507
Eco31I GGTCTC 1 cut(s) 1088
Eco32I GATATC 2 cut(s) 447, 482
Eco47I GGWCC 1 cut(s) 68
Eco53kI GAGCTC 1 cut(s) 505
Eco57I CTGAAG 3 cut(s) 280, 292, 401
EcoICRI GAGCTC 1 cut(s) 505
EcoO109I RGGNCCY 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 764
EcoRV GATATC 2 cut(s) 447, 482
EcoT14I CCWWGG 2 cut(s) 684, 960
EcoT38I GRGCYC 3 cut(s) 214, 293, 507
ErhI CCWWGG 2 cut(s) 684, 960
FaeI CATG 5 cut(s) 615, 668, 890, 1001, 1087
FalI AAGNNNNNCTT 6 cut(s) 278, 310, 399, 431, 599, 631
FaqI GGGAC 2 cut(s) 55, 1060
FatI CATG 5 cut(s) 611, 664, 886, 997, 1083
Fnu4HI GCNGC 3 cut(s) 548, 551, 695
FokI GGATG 2 cut(s) 670, 881
FriOI GRGCYC 3 cut(s) 214, 293, 507
Fsp4HI GCNGC 3 cut(s) 548, 551, 695
FspBI CTAG 2 cut(s) 189, 252
GluI GCNGC 3 cut(s) 548, 551, 695
GsuI CTGGAG 1 cut(s) 581
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 655
Hin1II CATG 5 cut(s) 615, 668, 890, 1001, 1087
HindIII AAGCTT 1 cut(s) 566
HinfI GANTC 5 cut(s) 181, 509, 718, 744, 809
HpaII CCGG 1 cut(s) 655
HphI GGTGA 2 cut(s) 295, 770
Hpy166II GTNNAC 1 cut(s) 423
Hpy188I TCNGA 6 cut(s) 299, 311, 451, 580, 622, 1134
Hpy188III TCNNGA 7 cut(s) 103, 224, 407, 560, 655, 1084, 1167
Hpy8I GTNNAC 1 cut(s) 423
HpyAV CCTTC 7 cut(s) 166, 269, 280, 304, 821, 941, 1134
HpyCH4III ACNGT 5 cut(s) 113, 824, 937, 1077, 1104
HpyCH4V TGCA 8 cut(s) 49, 125, 232, 395, 550, 649, 775, 880
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 994
HpyF3I CTNAG 6 cut(s) 225, 381, 450, 918, 1022, 1065
Hsp92II CATG 5 cut(s) 615, 668, 890, 1001, 1087
Kpn2I TCCGGA 1 cut(s) 654
Kzo9I GATC 7 cut(s) 17, 99, 220, 349, 541, 708, 795
LmnI GCTCC 3 cut(s) 296, 502, 985
Lsp1109I GCAGC 3 cut(s) 534, 562, 706
LweI GCATC 2 cut(s) 774, 784
MabI ACCWGGT 1 cut(s) 764
MaeI CTAG 2 cut(s) 189, 252
MaeIII GTNAC 1 cut(s) 107
MalI GATC 7 cut(s) 19, 101, 222, 351, 543, 710, 797
MboI GATC 7 cut(s) 17, 99, 220, 349, 541, 708, 795
MboII GAAGA 9 cut(s) 181, 190, 192, 195, 250, 253, 449, 766, 830
MfeI CAATTG 1 cut(s) 748
MflI RGATCY 2 cut(s) 349, 541
MhlI GDGCHC 4 cut(s) 82, 214, 293, 507
MlyI GAGTC 2 cut(s) 175, 727
MmeI TCCRAC 1 cut(s) 932
MnlI CCTC 9 cut(s) 228, 237, 370, 493, 721, 846, 1060, 1101, 1128
MroI TCCGGA 1 cut(s) 654
MseI TTAA 5 cut(s) 318, 606, 701, 993, 1005
MslI CAYNNNNRTG 2 cut(s) 891, 1153
MspCI CTTAAG 1 cut(s) 317
MspI CCGG 1 cut(s) 655
MspR9I CCNGG 1 cut(s) 766
MunI CAATTG 1 cut(s) 748
MvaI CCWGG 1 cut(s) 766
MwoI GCNNNNNNNGC 2 cut(s) 401, 994
NdeII GATC 7 cut(s) 17, 99, 220, 349, 541, 708, 795
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 5 cut(s) 615, 668, 890, 1001, 1087
NlaIV GGNNCC 4 cut(s) 70, 132, 292, 351
NspI RCATGY 1 cut(s) 1001
NspV TTCGAA 1 cut(s) 328
PaeI GCATGC 1 cut(s) 1001
PagI TCATGA 1 cut(s) 1083
PfeI GAWTC 3 cut(s) 509, 744, 809
PkrI GCNGC 3 cut(s) 549, 552, 696
PleI GAGTC 2 cut(s) 175, 726
PpsI GAGTC 2 cut(s) 175, 726
PsiI TTATAA 1 cut(s) 147
Psp124BI GAGCTC 1 cut(s) 507
Psp6I CCWGG 1 cut(s) 764
PspGI CCWGG 1 cut(s) 764
PspN4I GGNNCC 4 cut(s) 70, 132, 292, 351
PspPI GGNCC 2 cut(s) 68, 130
PsrI GAACNNNNNNTAC 2 cut(s) 840, 872
PstI CTGCAG 1 cut(s) 552
PsuI RGATCY 2 cut(s) 349, 541
RsaI GTAC 1 cut(s) 663
RsaNI GTAC 1 cut(s) 662
RseI CAYNNNNRTG 2 cut(s) 891, 1153
SacI GAGCTC 1 cut(s) 507
SaqAI TTAA 5 cut(s) 318, 606, 701, 993, 1005
SatI GCNGC 3 cut(s) 548, 551, 695
Sau3AI GATC 7 cut(s) 17, 99, 220, 349, 541, 708, 795
Sau96I GGNCC 2 cut(s) 68, 130
SchI GAGTC 2 cut(s) 175, 727
ScrFI CCNGG 1 cut(s) 766
SduI GDGCHC 4 cut(s) 82, 214, 293, 507
SexAI ACCWGGT 1 cut(s) 764
SfaNI GCATC 2 cut(s) 774, 784
SfcI CTRYAG 1 cut(s) 548
SfuI TTCGAA 1 cut(s) 328
SinI GGWCC 1 cut(s) 68
SmiMI CAYNNNNRTG 2 cut(s) 891, 1153
SmlI CTYRAG 2 cut(s) 317, 405
SmoI CTYRAG 2 cut(s) 317, 405
SphI GCATGC 1 cut(s) 1001
SspMI CTAG 2 cut(s) 189, 252
SstI GAGCTC 1 cut(s) 507
StyD4I CCNGG 1 cut(s) 764
StyI CCWWGG 2 cut(s) 684, 960
TaaI ACNGT 5 cut(s) 113, 824, 937, 1077, 1104
TaqI TCGA 3 cut(s) 328, 507, 794
TfiI GAWTC 3 cut(s) 509, 744, 809
Tru1I TTAA 5 cut(s) 318, 606, 701, 993, 1005
Tru9I TTAA 5 cut(s) 318, 606, 701, 993, 1005
TscAI CASTG 4 cut(s) 43, 118, 461, 946
TseI GCWGC 3 cut(s) 547, 550, 694
TspDTI ATGAA 5 cut(s) 647, 909, 1023, 1032, 1100
TspGWI ACGGA 1 cut(s) 865
TspRI CASTG 4 cut(s) 43, 118, 461, 946
Vha464I CTTAAG 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 68
XceI RCATGY 1 cut(s) 1001
XcmI CCANNNNNNNNNTGG 1 cut(s) 1040
XspI CTAG 2 cut(s) 189, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.