Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001531

Physical Location & Seq

Genomic Coordinates Reverse (-)

67439406 .. 67440462

Gene Structure 1057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG517200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAAGCCTTATTAAAACCCAGAATTGAAGAGGCCATGAAGCTGCTTACTGCAAAAAAGGGTAAAGATGAACGTTGGTTCACTGCTTCATTAGATCAAAAGATGTTATGTAGGCGCCATTTGCTATCTGTTATTGGGCTTAAAGAGGAACTCGTAGATTCTCTGATTCTTGAAAGGAAGAAAATGGATCTACTGCAACTACTTGTACATAAGCTTCGTTTCGCAGACAATGCTTACCAAAAGAAACCAATCAAGGCATGCTTGTCAGCTGATCAAGAGATGAGGAAACATAACTTGCATTTCCGGATGGTACATGGAAGCAAGAGTTTGGCCAAGGAAAAGCAGCTTCTGAAAGAGATCAATGGGAGCCAGAAGCAAGATGGGGAAGAGGATAGTTTTGATTCAATTTTTAATCAGTGGGAAGAAGATCTTGCATTTGTTTGTGATAATACTGGGAACTATATAAGGTACCATAAGTGGTGGTGGCATATTGATCGGCATGAACAAATTTGGTGGTTGCAACACCAGATGCCATTTGTGATCAGTAGGGGAGATGCAACAGATCGCGAAGGAGAAATCAGAGAGCTCCTATGCAGAATAGAAAGCTGTGGAGTTGTACTGCTAAAGAAAGCAAATAAAACACCAATTGCTAATAATATAACTGGAAATGCTAGTCCTACTCTTGTGAAGGGAAAGACTTGGACTTCTTTGGGTTCAAAAAAAGCCTTACAGGAGCAAATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

28.92

Weight (kDa)

9.09

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11970
fragaria_vesca	FvH4_2g31530 FvH4_2g31540 FvH4_2g31541 FvH4_2g31550 FvH4_2g31590 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591
malus_domestica	MD08G1065000.v1.1 MD08G1065100.v1.1 MD08G1065200.v1.1 MD15G1056600.v1.1
prunus_persica	Prupe.1G409100_v2.0.a1 Prupe.1G409200_v2.0.a1
pyrus_communis	pycom08g05380 pycom08g05390 pycom15g05300
rosa_chinensis	RchiOBHm_Chr6g0311231
rosa_laevigata	RLG00000010424 RLG00000010425
rosa_multiflora	Rmu_sc0012046.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157850 Rroxscaffold_7G00157860 Rroxscaffold_7G00157870 Rroxscaffold_7G00157880
rosa_rugosa	Rorug06G0386700.1 Rorug06G0386800 Rorug06G0386800
rosa_samantha	Rh6AG500900 Rh6AG501000 Rh6AG501100 Rh6AG501200 Rh6BG511400 Rh6BG511500 Rh6BG511600 Rh6BG511700 Rh6BG511800 Rh6CG517200 Rh6CG517300 Rh6CG517400 Rh6CG517500 Rh6CG517700 Rh6DG503700 Rh6DG503800
rosa_wichuraiana	Rw6G043610 Rw6G043640 Rw6G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	468
AccB1I	GGYRCC	2 cut(s)	114, 468
AccII	CGCG	1 cut(s)	567
AccIII	TCCGGA	1 cut(s)	303
AclI	AACGTT	1 cut(s)	73
AclWI	GGATC	1 cut(s)	195
AcoI	YGGCCR	1 cut(s)	330
AcsI	RAATTY	1 cut(s)	507
AcyI	GRCGYC	1 cut(s)	115
AfaI	GTAC	4 cut(s)	207, 312, 470, 618
AgsI	TTSAA	4 cut(s)	29, 173, 405, 717
AluBI	AGCT	6 cut(s)	43, 214, 269, 346, 586, 606
AluI	AGCT	6 cut(s)	43, 214, 269, 346, 586, 606
Alw21I	GWGCWC	1 cut(s)	588
AlwI	GGATC	1 cut(s)	195
AlwNI	CAGNNNCTG	1 cut(s)	349
Aor13HI	TCCGGA	1 cut(s)	303
AoxI	GGCC	2 cut(s)	33, 330
ApeKI	GCWGC	2 cut(s)	43, 343
ApoI	RAATTY	1 cut(s)	507
AseI	ATTAAT	1 cut(s)	741
Asp718I	GGTACC	1 cut(s)	468
AspLEI	GCGC	1 cut(s)	117
BalI	TGGCCA	1 cut(s)	332
BanI	GGYRCC	2 cut(s)	114, 468
BanII	GRGCYC	1 cut(s)	588
BarI	GAAGNNNNNNTAC	2 cut(s)	198, 230
Bbv12I	GWGCWC	1 cut(s)	588
BbvI	GCAGC	2 cut(s)	30, 355
BccI	CCATC	2 cut(s)	301, 374
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BclI	TGATCA	2 cut(s)	271, 540
BfaI	CTAG	1 cut(s)	672
BfoI	RGCGCY	1 cut(s)	118
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	2 cut(s)	44, 344
BlsI	GCNGC	2 cut(s)	45, 345
BmiI	GGNNCC	3 cut(s)	116, 368, 470
BmrI	ACTGGG	1 cut(s)	462
BmsI	GCATC	2 cut(s)	519, 544
BmuI	ACTGGG	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	333
BsaWI	WCCGGW	1 cut(s)	303
Bse1I	ACTGG	2 cut(s)	457, 667
BseAI	TCCGGA	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	1 cut(s)	312
BseNI	ACTGG	2 cut(s)	457, 667
BseXI	GCAGC	2 cut(s)	30, 355
Bsh1236I	CGCG	1 cut(s)	567
BshFI	GGCC	2 cut(s)	35, 332
BshNI	GGYRCC	2 cut(s)	114, 468
BsiHKAI	GWGCWC	1 cut(s)	588
BsiSI	CCGG	1 cut(s)	304
BsnI	GGCC	2 cut(s)	35, 332
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp13I	TCCGGA	1 cut(s)	303
Bsp1407I	TGTACA	1 cut(s)	205
Bsp143I	GATC	8 cut(s)	94, 187, 271, 357, 427, 493, 540, 562
Bsp68I	TCGCGA	1 cut(s)	567
BspANI	GGCC	2 cut(s)	35, 332
BspEI	TCCGGA	1 cut(s)	303
BspFNI	CGCG	1 cut(s)	567
BspLI	GGNNCC	3 cut(s)	116, 368, 470
BspPI	GGATC	1 cut(s)	195
BspT107I	GGYRCC	2 cut(s)	114, 468
BsrGI	TGTACA	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	457, 667
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	8 cut(s)	94, 187, 271, 357, 427, 493, 540, 562
BssNI	GRCGYC	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	333
Bst6I	CTCTTC	2 cut(s)	24, 381
BstACI	GRCGYC	1 cut(s)	115
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstAUI	TGTACA	1 cut(s)	205
BstC8I	GCNNGC	1 cut(s)	259
BstF5I	GGATG	1 cut(s)	312
BstFNI	CGCG	1 cut(s)	567
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	8 cut(s)	97, 190, 274, 360, 430, 496, 543, 565
BstMBI	GATC	8 cut(s)	94, 187, 271, 357, 427, 493, 540, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 230
BstNSI	RCATGY	1 cut(s)	261
BstUI	CGCG	1 cut(s)	567
BstV1I	GCAGC	2 cut(s)	30, 355
BstX2I	RGATCY	2 cut(s)	187, 427
BstYI	RGATCY	2 cut(s)	187, 427
BsuRI	GGCC	2 cut(s)	35, 332
BtsCI	GGATG	1 cut(s)	312
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	2 cut(s)	81, 422
BtuMI	TCGCGA	1 cut(s)	567
Cac8I	GCNNGC	1 cut(s)	259
CaiI	CAGNNNCTG	1 cut(s)	349
CfoI	GCGC	1 cut(s)	117
Csp6I	GTAC	4 cut(s)	206, 311, 469, 617
CspCI	CAANNNNNGTGG	2 cut(s)	494, 529
CviAII	CATG	4 cut(s)	37, 258, 314, 500
CviQI	GTAC	4 cut(s)	206, 311, 469, 617
DinI	GGCGCC	1 cut(s)	116
DpnI	GATC	8 cut(s)	96, 189, 273, 359, 429, 495, 542, 564
DpnII	GATC	8 cut(s)	94, 187, 271, 357, 427, 493, 540, 562
EaeI	YGGCCR	1 cut(s)	330
Eam1104I	CTCTTC	2 cut(s)	24, 381
EarI	CTCTTC	2 cut(s)	24, 381
Ecl136II	GAGCTC	1 cut(s)	586
Eco130I	CCWWGG	1 cut(s)	333
Eco24I	GRGCYC	1 cut(s)	588
Eco53kI	GAGCTC	1 cut(s)	586
EcoICRI	GAGCTC	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	333
EcoT38I	GRGCYC	1 cut(s)	588
EgeI	GGCGCC	1 cut(s)	116
EheI	GGCGCC	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	4 cut(s)	40, 261, 317, 503
FalI	AAGNNNNNCTT	4 cut(s)	245, 277, 414, 446
FatI	CATG	4 cut(s)	36, 257, 313, 499
FbaI	TGATCA	2 cut(s)	271, 540
Fnu4HI	GCNGC	2 cut(s)	44, 344
FokI	GGATG	1 cut(s)	319
FriOI	GRGCYC	1 cut(s)	588
Fsp4HI	GCNGC	2 cut(s)	44, 344
FspBI	CTAG	1 cut(s)	672
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	2 cut(s)	44, 344
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	2 cut(s)	35, 332
HapII	CCGG	1 cut(s)	304
HhaI	GCGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	4 cut(s)	40, 261, 317, 503
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	3 cut(s)	158, 166, 401
HpaII	CCGG	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	3 cut(s)	165, 351, 581
Hpy188III	TCNNGA	4 cut(s)	170, 275, 304, 566
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	2 cut(s)	563, 682
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	7 cut(s)	53, 196, 298, 434, 520, 557, 594
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 230
HpySE526I	ACGT	1 cut(s)	73
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	4 cut(s)	40, 261, 317, 503
HspAI	GCGC	1 cut(s)	115
KasI	GGCGCC	1 cut(s)	114
Kpn2I	TCCGGA	1 cut(s)	303
KpnI	GGTACC	1 cut(s)	472
Ksp22I	TGATCA	2 cut(s)	271, 540
Kzo9I	GATC	8 cut(s)	94, 187, 271, 357, 427, 493, 540, 562
LmnI	GCTCC	3 cut(s)	366, 591, 733
LpnPI	CCDG	7 cut(s)	34, 317, 383, 438, 539, 648, 716
Lsp1109I	GCAGC	2 cut(s)	30, 355
LweI	GCATC	2 cut(s)	519, 544
MaeI	CTAG	1 cut(s)	672
MaeII	ACGT	1 cut(s)	73
MalI	GATC	8 cut(s)	96, 189, 273, 359, 429, 495, 542, 564
MboI	GATC	8 cut(s)	94, 187, 271, 357, 427, 493, 540, 562
MboII	GAAGA	5 cut(s)	41, 190, 398, 434, 437
MfeI	CAATTG	1 cut(s)	645
MflI	RGATCY	2 cut(s)	187, 427
MhlI	GDGCHC	1 cut(s)	588
MlsI	TGGCCA	1 cut(s)	332
MluCI	AATT	6 cut(s)	24, 405, 507, 645, 738, 742
MluNI	TGGCCA	1 cut(s)	332
Mly113I	GGCGCC	1 cut(s)	115
MnlI	CCTC	4 cut(s)	25, 139, 276, 382
Mox20I	TGGCCA	1 cut(s)	332
MroI	TCCGGA	1 cut(s)	303
MscI	TGGCCA	1 cut(s)	332
MseI	TTAA	5 cut(s)	14, 141, 411, 741, 745
Msp20I	TGGCCA	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	1 cut(s)	304
MunI	CAATTG	1 cut(s)	645
MvnI	CGCG	1 cut(s)	567
MwoI	GCNNNNNNNGC	2 cut(s)	121, 230
NarI	GGCGCC	1 cut(s)	115
NdeII	GATC	8 cut(s)	94, 187, 271, 357, 427, 493, 540, 562
NlaIII	CATG	4 cut(s)	40, 261, 317, 503
NlaIV	GGNNCC	3 cut(s)	116, 368, 470
NruI	TCGCGA	1 cut(s)	567
NspI	RCATGY	1 cut(s)	261
PacI	TTAATTAA	1 cut(s)	745
PaeI	GCATGC	1 cut(s)	261
PfeI	GAWTC	3 cut(s)	158, 166, 401
PkrI	GCNGC	2 cut(s)	45, 345
PluTI	GGCGCC	1 cut(s)	118
PshBI	ATTAAT	1 cut(s)	741
Psp124BI	GAGCTC	1 cut(s)	588
Psp1406I	AACGTT	1 cut(s)	73
PspN4I	GGNNCC	3 cut(s)	116, 368, 470
PstNI	CAGNNNCTG	1 cut(s)	349
PsuI	RGATCY	2 cut(s)	187, 427
PvuII	CAGCTG	1 cut(s)	269
RruI	TCGCGA	1 cut(s)	567
RsaI	GTAC	4 cut(s)	207, 312, 470, 618
RsaNI	GTAC	4 cut(s)	206, 311, 469, 617
SacI	GAGCTC	1 cut(s)	588
SaqAI	TTAA	5 cut(s)	14, 141, 411, 741, 745
SatI	GCNGC	2 cut(s)	44, 344
Sau3AI	GATC	8 cut(s)	94, 187, 271, 357, 427, 493, 540, 562
SduI	GDGCHC	1 cut(s)	588
SetI	ASST	8 cut(s)	45, 76, 216, 271, 348, 470, 588, 608
SfaNI	GCATC	2 cut(s)	519, 544
SfoI	GGCGCC	1 cut(s)	116
SphI	GCATGC	1 cut(s)	261
Sse9I	AATT	6 cut(s)	24, 405, 507, 645, 738, 742
SspDI	GGCGCC	1 cut(s)	114
SspMI	CTAG	1 cut(s)	672
SstI	GAGCTC	1 cut(s)	588
StyI	CCWWGG	1 cut(s)	333
TaiI	ACGT	1 cut(s)	76
TasI	AATT	6 cut(s)	24, 405, 507, 645, 738, 742
TatI	WGTACW	2 cut(s)	205, 616
TfiI	GAWTC	3 cut(s)	158, 166, 401
Tru1I	TTAA	5 cut(s)	14, 141, 411, 741, 745
Tru9I	TTAA	5 cut(s)	14, 141, 411, 741, 745
TscAI	CASTG	2 cut(s)	88, 422
TseI	GCWGC	2 cut(s)	43, 343
TspDTI	ATGAA	4 cut(s)	53, 78, 84, 516
TspRI	CASTG	2 cut(s)	88, 422
VspI	ATTAAT	1 cut(s)	741
XapI	RAATTY	1 cut(s)	507
XceI	RCATGY	1 cut(s)	261
XcmI	CCANNNNNNNNNTGG	1 cut(s)	377
XspI	CTAG	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.