Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001531

Physical Location & Seq

Genomic Coordinates Forward (+)

24157889 .. 24159144

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGCAAAACTTGCGTTACCGGATGGAACATGGAAGCAAGAGTTTGGTTACAGAAAAGAGGCTTCTGAAGGAGATAAAAGGGATTCAGAAGCAGAAGGAGAAGGATAGTTTGGCTTTACTTTGTACTCAATGTCGTCAATGTGAAGCAGATATTGCATATGCTACTGAACATTTGAGAAGGACTGGGAACTATACAAGGCACCGTATGTATCACAATTGGTGGTGGCATATTGCTCGTTATCAAAAGTTTGAGTGGGTGCAAGGTACATTTACGATCAGCAGGGGAGGTACGAAAGACCGCGGAGGCGAAATCAGAGATCTTGAATGCAGTATAGAAAAATGTGGAGTTGTACTGCTAGAAAAAGCAGATAAAACACCAACTGCTAATGATAAGACTGGAAATGCTAGTCCCACTCTTGTAATGGGAAAGACTTGGACTTCTTTGGTTTCAAAGAACGCCTTAGAGGAACAAATTAAGCTTGCTGGTGAGGAAATAGAGGAATCAAGGAAGACCCTATTGGCTCTCGGCCATGGGCCAAAAAGTGGTGAGGCTCAGAGAAACTTGGTGGGTGTGGAAAAGGAGCTCAGTGATCCCTTGATGAAATTGCCGGGACTGCGTCGGAAGAGAATTGGATTACACCAATGCATTCTGGACCTTATCACAAAACAACAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

25.71

Weight (kDa)

9.42

Isoelectric Point (pI)

40.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11970
fragaria_vesca	FvH4_2g31530 FvH4_2g31540 FvH4_2g31541 FvH4_2g31550 FvH4_2g31590 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591
malus_domestica	MD08G1065000.v1.1 MD08G1065100.v1.1 MD08G1065200.v1.1 MD15G1056600.v1.1
prunus_persica	Prupe.1G409100_v2.0.a1 Prupe.1G409200_v2.0.a1
pyrus_communis	pycom08g05380 pycom08g05390 pycom15g05300
rosa_chinensis	RchiOBHm_Chr6g0311231
rosa_laevigata	RLG00000010424 RLG00000010425
rosa_multiflora	Rmu_sc0012046.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157850 Rroxscaffold_7G00157860 Rroxscaffold_7G00157870 Rroxscaffold_7G00157880
rosa_rugosa	Rorug06G0386700.1 Rorug06G0386800 Rorug06G0386800
rosa_samantha	Rh6AG500900 Rh6AG501000 Rh6AG501100 Rh6AG501200 Rh6BG511400 Rh6BG511500 Rh6BG511600 Rh6BG511700 Rh6BG511800 Rh6CG517200 Rh6CG517300 Rh6CG517400 Rh6CG517500 Rh6CG517700 Rh6DG503700 Rh6DG503800
rosa_wichuraiana	Rw6G043610 Rw6G043640 Rw6G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	198
AccB7I	CCANNNNNTGG	1 cut(s)	542
AccII	CGCG	1 cut(s)	300
AciI	CCGC	2 cut(s)	298, 300
AclWI	GGATC	1 cut(s)	584
AcoI	YGGCCR	1 cut(s)	526
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	4 cut(s)	124, 265, 289, 351
AfiI	CCNNNNNNNGG	1 cut(s)	542
AgsI	TTSAA	2 cut(s)	323, 450
AjuI	GAANNNNNNNTTGG	4 cut(s)	92, 124, 500, 532
AluBI	AGCT	2 cut(s)	478, 583
AluI	AGCT	2 cut(s)	478, 583
Alw21I	GWGCWC	1 cut(s)	585
AlwI	GGATC	1 cut(s)	584
AoxI	GGCC	2 cut(s)	526, 533
AspS9I	GGNCC	2 cut(s)	533, 652
AsuC2I	CCSGG	1 cut(s)	609
AsuHPI	GGTGA	2 cut(s)	497, 557
AvaII	GGWCC	1 cut(s)	652
BanI	GGYRCC	1 cut(s)	198
BanII	GRGCYC	1 cut(s)	585
BbsI	GAAGAC	1 cut(s)	515
Bbv12I	GWGCWC	1 cut(s)	585
BccI	CCATC	1 cut(s)	16
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BcnI	CCSGG	1 cut(s)	609
BfaI	CTAG	2 cut(s)	356, 405
BglII	AGATCT	1 cut(s)	316
Bme1390I	CCNGG	1 cut(s)	609
Bme18I	GGWCC	1 cut(s)	652
BmgT120I	GGNCC	2 cut(s)	533, 652
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	609
BmrI	ACTGGG	1 cut(s)	192
BmuI	ACTGGG	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	515
BpuMI	CCSGG	1 cut(s)	609
BsaJI	CCNNGG	2 cut(s)	298, 529
BsaWI	WCCGGW	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	1 cut(s)	542
Bse1I	ACTGG	2 cut(s)	187, 400
BseDI	CCNNGG	2 cut(s)	298, 529
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	1 cut(s)	542
BseMII	CTCAG	2 cut(s)	566, 598
BseNI	ACTGG	2 cut(s)	187, 400
Bsh1236I	CGCG	1 cut(s)	300
BshFI	GGCC	2 cut(s)	528, 535
BshNI	GGYRCC	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	585
BsiSI	CCGG	2 cut(s)	19, 608
BslFI	GGGAC	2 cut(s)	393, 624
BslI	CCNNNNNNNGG	1 cut(s)	542
BsmFI	GGGAC	2 cut(s)	393, 624
BsmI	GAATGC	2 cut(s)	329, 645
BsnI	GGCC	2 cut(s)	528, 535
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp143I	GATC	3 cut(s)	273, 316, 589
Bsp19I	CCATGG	1 cut(s)	529
BspACI	CCGC	2 cut(s)	298, 300
BspANI	GGCC	2 cut(s)	528, 535
BspCNI	CTCAG	2 cut(s)	565, 597
BspFNI	CGCG	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	200
BspPI	GGATC	1 cut(s)	584
BspT107I	GGYRCC	1 cut(s)	198
BsrI	ACTGG	2 cut(s)	187, 400
BssECI	CCNNGG	2 cut(s)	298, 529
BssMI	GATC	3 cut(s)	273, 316, 589
BssT1I	CCWWGG	1 cut(s)	529
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	617
BstAPI	GCANNNNNTGC	2 cut(s)	10, 152
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	3 cut(s)	460, 552, 584
BstDSI	CCRYGG	2 cut(s)	298, 529
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	300
BstKTI	GATC	3 cut(s)	276, 319, 592
BstMBI	GATC	3 cut(s)	273, 316, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 152, 613
BstSCI	CCNGG	1 cut(s)	607
BstUI	CGCG	1 cut(s)	300
BstV2I	GAAGAC	1 cut(s)	515
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BsuRI	GGCC	2 cut(s)	528, 535
BtgI	CCRYGG	2 cut(s)	298, 529
BtsCI	GGATG	1 cut(s)	27
BtsIMutI	CAGTG	1 cut(s)	592
Cac8I	GCNNGC	1 cut(s)	480
Cfr13I	GGNCC	2 cut(s)	533, 652
Cfr42I	CCGCGG	1 cut(s)	301
CseI	GACGC	1 cut(s)	605
Csp6I	GTAC	4 cut(s)	123, 264, 288, 350
CviAII	CATG	3 cut(s)	29, 530, 675
CviJI	RGCY	8 cut(s)	61, 113, 478, 521, 528, 535, 551, 583
CviKI_1	RGCY	8 cut(s)	61, 113, 478, 521, 528, 535, 551, 583
CviQI	GTAC	4 cut(s)	123, 264, 288, 350
DdeI	CTNAG	3 cut(s)	460, 552, 584
DpnI	GATC	3 cut(s)	275, 318, 591
DpnII	GATC	3 cut(s)	273, 316, 589
EaeI	YGGCCR	1 cut(s)	526
Eam1104I	CTCTTC	1 cut(s)	617
EarI	CTCTTC	1 cut(s)	617
Ecl136II	GAGCTC	1 cut(s)	583
Eco130I	CCWWGG	1 cut(s)	529
Eco24I	GRGCYC	1 cut(s)	585
Eco47I	GGWCC	1 cut(s)	652
Eco53kI	GAGCTC	1 cut(s)	583
Eco57I	CTGAAG	1 cut(s)	86
EcoICRI	GAGCTC	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	529
EcoT22I	ATGCAT	1 cut(s)	647
EcoT38I	GRGCYC	1 cut(s)	585
ErhI	CCWWGG	1 cut(s)	529
FaeI	CATG	3 cut(s)	32, 533, 678
FaiI	YATR	9 cut(s)	30, 157, 159, 192, 206, 228, 332, 531, 676
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FaqI	GGGAC	2 cut(s)	393, 624
FatI	CATG	3 cut(s)	28, 529, 674
FauNDI	CATATG	1 cut(s)	157
FokI	GGATG	1 cut(s)	34
FriOI	GRGCYC	1 cut(s)	585
FspBI	CTAG	2 cut(s)	356, 405
HaeIII	GGCC	2 cut(s)	528, 535
HapII	CCGG	2 cut(s)	19, 608
HgaI	GACGC	1 cut(s)	605
Hin1II	CATG	3 cut(s)	32, 533, 678
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	2 cut(s)	82, 500
HpaII	CCGG	2 cut(s)	19, 608
HphI	GGTGA	2 cut(s)	497, 557
Hpy188I	TCNGA	5 cut(s)	66, 87, 314, 555, 621
Hpy188III	TCNNGA	2 cut(s)	320, 650
Hpy99I	CGWCG	1 cut(s)	621
HpyAV	CCTTC	4 cut(s)	61, 88, 94, 171
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	5 cut(s)	4, 155, 259, 327, 645
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 152, 613
HpyF3I	CTNAG	3 cut(s)	460, 552, 584
Hsp92II	CATG	3 cut(s)	32, 533, 678
KspI	CCGCGG	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	273, 316, 589
LmnI	GCTCC	1 cut(s)	580
LpnPI	CCDG	7 cut(s)	32, 168, 265, 381, 468, 621, 635
MaeI	CTAG	2 cut(s)	356, 405
MaeIII	GTNAC	2 cut(s)	14, 46
MalI	GATC	3 cut(s)	275, 318, 591
MboI	GATC	3 cut(s)	273, 316, 589
MboII	GAAGA	2 cut(s)	520, 634
MfeI	CAATTG	1 cut(s)	214
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	585
MluCI	AATT	4 cut(s)	214, 471, 602, 627
MmeI	TCCRAC	1 cut(s)	599
MnlI	CCTC	7 cut(s)	51, 278, 296, 457, 481, 490, 541
Mph1103I	ATGCAT	1 cut(s)	647
MseI	TTAA	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	300
MspI	CCGG	2 cut(s)	19, 608
MspR9I	CCNGG	1 cut(s)	609
MunI	CAATTG	1 cut(s)	214
Mva1269I	GAATGC	2 cut(s)	329, 645
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	3 cut(s)	10, 152, 613
NciI	CCSGG	1 cut(s)	609
NcoI	CCATGG	1 cut(s)	529
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	3 cut(s)	273, 316, 589
NlaIII	CATG	3 cut(s)	32, 533, 678
NlaIV	GGNNCC	1 cut(s)	200
NmeAIII	GCCGAG	1 cut(s)	504
NsiI	ATGCAT	1 cut(s)	647
PctI	GAATGC	2 cut(s)	329, 645
PfeI	GAWTC	2 cut(s)	82, 500
PflFI	GACNNNGTC	1 cut(s)	615
PflMI	CCANNNNNTGG	1 cut(s)	542
Psp124BI	GAGCTC	1 cut(s)	585
PspN4I	GGNNCC	1 cut(s)	200
PspPI	GGNCC	2 cut(s)	533, 652
PsuI	RGATCY	1 cut(s)	316
PsyI	GACNNNGTC	1 cut(s)	615
RsaI	GTAC	4 cut(s)	124, 265, 289, 351
RsaNI	GTAC	4 cut(s)	123, 264, 288, 350
SacI	GAGCTC	1 cut(s)	585
SacII	CCGCGG	1 cut(s)	301
SaqAI	TTAA	1 cut(s)	474
Sau3AI	GATC	3 cut(s)	273, 316, 589
Sau96I	GGNCC	2 cut(s)	533, 652
ScrFI	CCNGG	1 cut(s)	609
SduI	GDGCHC	1 cut(s)	585
SetI	ASST	5 cut(s)	265, 289, 480, 585, 657
Sfr303I	CCGCGG	1 cut(s)	301
SgrBI	CCGCGG	1 cut(s)	301
SinI	GGWCC	1 cut(s)	652
Sse9I	AATT	4 cut(s)	214, 471, 602, 627
SsiI	CCGC	2 cut(s)	298, 300
SspMI	CTAG	2 cut(s)	356, 405
SstI	GAGCTC	1 cut(s)	585
StyD4I	CCNGG	1 cut(s)	607
StyI	CCWWGG	1 cut(s)	529
TaaI	ACNGT	1 cut(s)	203
TasI	AATT	4 cut(s)	214, 471, 602, 627
TatI	WGTACW	2 cut(s)	122, 349
TfiI	GAWTC	2 cut(s)	82, 500
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	1 cut(s)	592
TspDTI	ATGAA	1 cut(s)	614
TspRI	CASTG	1 cut(s)	592
Tth111I	GACNNNGTC	1 cut(s)	615
Van91I	CCANNNNNTGG	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	652
XcmI	CCANNNNNNNNNTGG	1 cut(s)	418
XspI	CTAG	2 cut(s)	356, 405
Zsp2I	ATGCAT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.