Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001531

Physical Location & Seq

Genomic Coordinates Reverse (-)

70714733 .. 70715723

Gene Structure 991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG511400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAAGCTGCTTACTGCAAAAAAGGGTAAAGATGAACGTTGGTTCACTGCTTCATTAGATCAAAAGATGTTATGTAGGCGCCATTTGCTATCTGTTATTGGGCTTAAAGAGGAACTCGTAGATTCTCTGATTCTTGAAAGGAAGAAAATGGATCTACTGCAACTACTTGTACATAAGCTTCGTTTCGCAGACAATGCTTACCAAAAGAAACCAATCAAGGCATGCTTGTCAGCTGATCAAGAGATGAGGAAACATAACTTGCATTTCCGGATGGTACATGGAAGCAAGAGTTTGGCCAAGGAAAAGCAGCTTCTGAAAGAGATCAATGGGAGCCAGAAGCAAGATGGGGAAGAGGATAGTTTTGATTCATTTTTTAATCAGTGGGAAGAAGATCTTGCATTTGTTTGTGATAATACTGGGAACTATATAAGGTACCATAAGTGGTGGTGGCATATTGATCGGCATGAACAAATTTGGTGGTTGCAACACCAGATGCCATTTGTGATCAGTAAGGGAGATGCAAAAGATCGCGAAGGAGAAATCAGAGAGCTCCTATGCAGAATAGAAAGCTGTGGAGTTGTACTGCTAAAGAAAGCAAATAAAACACCAATTGCTAATAATATAACTGGAAATGCTAGTCCTACTCTTGTGAAGGGAAAGACTTGGACTTCTTTGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

226

Amino Acids

26.43

Weight (kDa)

9.2

Isoelectric Point (pI)

50.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11970
fragaria_vesca	FvH4_2g31530 FvH4_2g31540 FvH4_2g31541 FvH4_2g31550 FvH4_2g31590 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591
malus_domestica	MD08G1065000.v1.1 MD08G1065100.v1.1 MD08G1065200.v1.1 MD15G1056600.v1.1
prunus_persica	Prupe.1G409100_v2.0.a1 Prupe.1G409200_v2.0.a1
pyrus_communis	pycom08g05380 pycom08g05390 pycom15g05300
rosa_chinensis	RchiOBHm_Chr6g0311231
rosa_laevigata	RLG00000010424 RLG00000010425
rosa_multiflora	Rmu_sc0012046.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157850 Rroxscaffold_7G00157860 Rroxscaffold_7G00157870 Rroxscaffold_7G00157880
rosa_rugosa	Rorug06G0386700.1 Rorug06G0386800 Rorug06G0386800
rosa_samantha	Rh6AG500900 Rh6AG501000 Rh6AG501100 Rh6AG501200 Rh6BG511400 Rh6BG511500 Rh6BG511600 Rh6BG511700 Rh6BG511800 Rh6CG517200 Rh6CG517300 Rh6CG517400 Rh6CG517500 Rh6CG517700 Rh6DG503700 Rh6DG503800
rosa_wichuraiana	Rw6G043610 Rw6G043640 Rw6G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	432
AccB1I	GGYRCC	2 cut(s)	78, 432
AccII	CGCG	1 cut(s)	531
AccIII	TCCGGA	1 cut(s)	267
AclI	AACGTT	1 cut(s)	37
AclWI	GGATC	1 cut(s)	159
AcoI	YGGCCR	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	471
AcyI	GRCGYC	1 cut(s)	79
AfaI	GTAC	4 cut(s)	171, 276, 434, 582
AgsI	TTSAA	1 cut(s)	137
AluBI	AGCT	6 cut(s)	7, 178, 233, 310, 550, 570
AluI	AGCT	6 cut(s)	7, 178, 233, 310, 550, 570
Alw21I	GWGCWC	1 cut(s)	552
AlwI	GGATC	1 cut(s)	159
AlwNI	CAGNNNCTG	1 cut(s)	313
Aor13HI	TCCGGA	1 cut(s)	267
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	2 cut(s)	7, 307
ApoI	RAATTY	1 cut(s)	471
Asp718I	GGTACC	1 cut(s)	432
AspLEI	GCGC	1 cut(s)	81
BalI	TGGCCA	1 cut(s)	296
BanI	GGYRCC	2 cut(s)	78, 432
BanII	GRGCYC	1 cut(s)	552
BarI	GAAGNNNNNNTAC	2 cut(s)	162, 194
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	2 cut(s)	265, 338
BcgI	CGANNNNNNTGC	2 cut(s)	440, 474
BclI	TGATCA	2 cut(s)	235, 504
BfaI	CTAG	1 cut(s)	636
BfoI	RGCGCY	1 cut(s)	82
BglII	AGATCT	1 cut(s)	391
BisI	GCNGC	2 cut(s)	8, 308
BlsI	GCNGC	2 cut(s)	9, 309
BmiI	GGNNCC	3 cut(s)	80, 332, 434
BmrI	ACTGGG	1 cut(s)	426
BmsI	GCATC	2 cut(s)	483, 508
BmuI	ACTGGG	1 cut(s)	426
BsaHI	GRCGYC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	297
BsaWI	WCCGGW	1 cut(s)	267
Bse1I	ACTGG	2 cut(s)	421, 631
BseAI	TCCGGA	1 cut(s)	267
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	276
BseNI	ACTGG	2 cut(s)	421, 631
BseXI	GCAGC	1 cut(s)	319
Bsh1236I	CGCG	1 cut(s)	531
BshFI	GGCC	1 cut(s)	296
BshNI	GGYRCC	2 cut(s)	78, 432
BsiHKAI	GWGCWC	1 cut(s)	552
BsiSI	CCGG	1 cut(s)	268
BsnI	GGCC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	552
Bsp13I	TCCGGA	1 cut(s)	267
Bsp1407I	TGTACA	1 cut(s)	169
Bsp143I	GATC	8 cut(s)	58, 151, 235, 321, 391, 457, 504, 526
Bsp68I	TCGCGA	1 cut(s)	531
BspANI	GGCC	1 cut(s)	296
BspEI	TCCGGA	1 cut(s)	267
BspFNI	CGCG	1 cut(s)	531
BspLI	GGNNCC	3 cut(s)	80, 332, 434
BspPI	GGATC	1 cut(s)	159
BspT107I	GGYRCC	2 cut(s)	78, 432
BsrGI	TGTACA	1 cut(s)	169
BsrI	ACTGG	2 cut(s)	421, 631
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	8 cut(s)	58, 151, 235, 321, 391, 457, 504, 526
BssNI	GRCGYC	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	297
Bst6I	CTCTTC	1 cut(s)	345
BstACI	GRCGYC	1 cut(s)	79
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstAUI	TGTACA	1 cut(s)	169
BstC8I	GCNNGC	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	276
BstFNI	CGCG	1 cut(s)	531
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	8 cut(s)	61, 154, 238, 324, 394, 460, 507, 529
BstMBI	GATC	8 cut(s)	58, 151, 235, 321, 391, 457, 504, 526
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 194
BstNSI	RCATGY	1 cut(s)	225
BstUI	CGCG	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	2 cut(s)	151, 391
BstYI	RGATCY	2 cut(s)	151, 391
BsuRI	GGCC	1 cut(s)	296
BtsCI	GGATG	1 cut(s)	276
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	2 cut(s)	45, 386
BtuMI	TCGCGA	1 cut(s)	531
Cac8I	GCNNGC	1 cut(s)	223
CaiI	CAGNNNCTG	1 cut(s)	313
CfoI	GCGC	1 cut(s)	81
Csp6I	GTAC	4 cut(s)	170, 275, 433, 581
CspCI	CAANNNNNGTGG	2 cut(s)	458, 493
CviAII	CATG	3 cut(s)	222, 278, 464
CviJI	RGCY	9 cut(s)	7, 103, 178, 233, 296, 310, 333, 550, 570
CviKI_1	RGCY	9 cut(s)	7, 103, 178, 233, 296, 310, 333, 550, 570
CviQI	GTAC	4 cut(s)	170, 275, 433, 581
DinI	GGCGCC	1 cut(s)	80
DpnI	GATC	8 cut(s)	60, 153, 237, 323, 393, 459, 506, 528
DpnII	GATC	8 cut(s)	58, 151, 235, 321, 391, 457, 504, 526
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Ecl136II	GAGCTC	1 cut(s)	550
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	552
Eco53kI	GAGCTC	1 cut(s)	550
EcoICRI	GAGCTC	1 cut(s)	550
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	552
EgeI	GGCGCC	1 cut(s)	80
EheI	GGCGCC	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	3 cut(s)	225, 281, 467
FalI	AAGNNNNNCTT	4 cut(s)	209, 241, 378, 410
FatI	CATG	3 cut(s)	221, 277, 463
FbaI	TGATCA	2 cut(s)	235, 504
Fnu4HI	GCNGC	2 cut(s)	8, 308
FokI	GGATG	1 cut(s)	283
FriOI	GRGCYC	1 cut(s)	552
Fsp4HI	GCNGC	2 cut(s)	8, 308
FspBI	CTAG	1 cut(s)	636
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	2 cut(s)	8, 308
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	1 cut(s)	268
HhaI	GCGC	1 cut(s)	81
Hin1I	GRCGYC	1 cut(s)	79
Hin1II	CATG	3 cut(s)	225, 281, 467
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	3 cut(s)	122, 130, 365
HpaII	CCGG	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	3 cut(s)	129, 315, 545
Hpy188III	TCNNGA	4 cut(s)	134, 239, 268, 530
Hpy8I	GTNNAC	1 cut(s)	45
HpyAV	CCTTC	2 cut(s)	527, 646
HpyCH4IV	ACGT	1 cut(s)	37
HpyCH4V	TGCA	7 cut(s)	17, 160, 262, 398, 484, 521, 558
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 194
HpySE526I	ACGT	1 cut(s)	37
Hsp92I	GRCGYC	1 cut(s)	79
Hsp92II	CATG	3 cut(s)	225, 281, 467
HspAI	GCGC	1 cut(s)	79
KasI	GGCGCC	1 cut(s)	78
Kpn2I	TCCGGA	1 cut(s)	267
KpnI	GGTACC	1 cut(s)	436
Ksp22I	TGATCA	2 cut(s)	235, 504
Kzo9I	GATC	8 cut(s)	58, 151, 235, 321, 391, 457, 504, 526
LmnI	GCTCC	2 cut(s)	330, 555
LpnPI	CCDG	5 cut(s)	281, 347, 402, 503, 612
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	2 cut(s)	483, 508
MaeI	CTAG	1 cut(s)	636
MaeII	ACGT	1 cut(s)	37
MalI	GATC	8 cut(s)	60, 153, 237, 323, 393, 459, 506, 528
MboI	GATC	8 cut(s)	58, 151, 235, 321, 391, 457, 504, 526
MboII	GAAGA	4 cut(s)	154, 362, 398, 401
MfeI	CAATTG	1 cut(s)	609
MflI	RGATCY	2 cut(s)	151, 391
MhlI	GDGCHC	1 cut(s)	552
MlsI	TGGCCA	1 cut(s)	296
MluCI	AATT	2 cut(s)	471, 609
MluNI	TGGCCA	1 cut(s)	296
Mly113I	GGCGCC	1 cut(s)	79
MnlI	CCTC	3 cut(s)	103, 240, 346
Mox20I	TGGCCA	1 cut(s)	296
MroI	TCCGGA	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	3 cut(s)	105, 375, 679
Msp20I	TGGCCA	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	1 cut(s)	268
MunI	CAATTG	1 cut(s)	609
MvnI	CGCG	1 cut(s)	531
MwoI	GCNNNNNNNGC	2 cut(s)	85, 194
NarI	GGCGCC	1 cut(s)	79
NdeII	GATC	8 cut(s)	58, 151, 235, 321, 391, 457, 504, 526
NlaIII	CATG	3 cut(s)	225, 281, 467
NlaIV	GGNNCC	3 cut(s)	80, 332, 434
NruI	TCGCGA	1 cut(s)	531
NspI	RCATGY	1 cut(s)	225
PaeI	GCATGC	1 cut(s)	225
PfeI	GAWTC	3 cut(s)	122, 130, 365
PkrI	GCNGC	2 cut(s)	9, 309
PluTI	GGCGCC	1 cut(s)	82
Psp124BI	GAGCTC	1 cut(s)	552
Psp1406I	AACGTT	1 cut(s)	37
PspN4I	GGNNCC	3 cut(s)	80, 332, 434
PstNI	CAGNNNCTG	1 cut(s)	313
PsuI	RGATCY	2 cut(s)	151, 391
PvuII	CAGCTG	1 cut(s)	233
RruI	TCGCGA	1 cut(s)	531
RsaI	GTAC	4 cut(s)	171, 276, 434, 582
RsaNI	GTAC	4 cut(s)	170, 275, 433, 581
SacI	GAGCTC	1 cut(s)	552
SaqAI	TTAA	3 cut(s)	105, 375, 679
SatI	GCNGC	2 cut(s)	8, 308
Sau3AI	GATC	8 cut(s)	58, 151, 235, 321, 391, 457, 504, 526
SduI	GDGCHC	1 cut(s)	552
SetI	ASST	8 cut(s)	9, 40, 180, 235, 312, 434, 552, 572
SfaNI	GCATC	2 cut(s)	483, 508
SfoI	GGCGCC	1 cut(s)	80
SphI	GCATGC	1 cut(s)	225
Sse9I	AATT	2 cut(s)	471, 609
SspDI	GGCGCC	1 cut(s)	78
SspMI	CTAG	1 cut(s)	636
SstI	GAGCTC	1 cut(s)	552
StyI	CCWWGG	1 cut(s)	297
TaiI	ACGT	1 cut(s)	40
TasI	AATT	2 cut(s)	471, 609
TatI	WGTACW	2 cut(s)	169, 580
TfiI	GAWTC	3 cut(s)	122, 130, 365
Tru1I	TTAA	3 cut(s)	105, 375, 679
Tru9I	TTAA	3 cut(s)	105, 375, 679
TscAI	CASTG	2 cut(s)	52, 386
TseI	GCWGC	2 cut(s)	7, 307
TspDTI	ATGAA	5 cut(s)	17, 42, 48, 357, 480
TspRI	CASTG	2 cut(s)	52, 386
XapI	RAATTY	1 cut(s)	471
XceI	RCATGY	1 cut(s)	225
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XspI	CTAG	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.