Rh6BG511800

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001531
Physical Location & Seq
Reverse (-)
70731619 .. 70732530
912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG511800.1

Sequence Viewer

Length: 522 bp
ATGGCTGACTATAACAGATCAAAGTCCTATGGTGGCAGTGGGACTATGCAGATGGAAAACTACTATGGACCCCCAAGAGCACCACCCAGTTCTTATGAGATCAGGAGTTACAATGTTTCCTATGCACAGGCCCAGATGGGGAATTATAATTACAACAACAGGGATTTGAAGAAGGGGAAGACTCATTCTAGGTCAAAGTCTTCTTCTTGGGCTCTGGCTGATCCTGAGTTGCAGAGGAAGAAGAGGGTTGCTAGCTACAAGATGTATTCTGTTGAAGGAAAGGTGAAGGGCTCCTTCAGAAACAGCTTCAGATGGCTTAAGGGTGGGAGCCCTAACTATGGCAAGGTTGCAGAGAGAAAACTAAGAGAATTGAAAAGAGGAAGAAGAAAATATCTTGATATATTGATTGATTTCCACCGCTTACAGAAACGAGGGATATATACCCAAACTGCTCACACAGATAAGGACACGTGTTGTGCATGTAAGGGAAGACTGCTTAACACCCTACTGACAGTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

173

Amino Acids

19.96

Weight (kDa)

10.11

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 73 - 107 4.3e-21 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 147
AciI CCGC 1 cut(s) 418
AclWI GGATC 1 cut(s) 215
AcuI CTGAAG 2 cut(s) 280, 292
AcvI CACGTG 1 cut(s) 471
AfiI CCNNNNNNNGG 2 cut(s) 138, 338
AflII CTTAAG 1 cut(s) 317
AflIII ACRYGT 2 cut(s) 468, 470
AgsI TTSAA 3 cut(s) 169, 275, 373
AluBI AGCT 2 cut(s) 255, 306
AluI AGCT 2 cut(s) 255, 306
Alw21I GWGCWC 1 cut(s) 82
AlwI GGATC 1 cut(s) 215
AoxI GGCC 1 cut(s) 129
AspS9I GGNCC 2 cut(s) 68, 130
AsuHPI GGTGA 1 cut(s) 295
AsuNHI GCTAGC 1 cut(s) 251
AvaII GGWCC 1 cut(s) 68
BanII GRGCYC 3 cut(s) 214, 293, 332
BbrPI CACGTG 1 cut(s) 471
BbsI GAAGAC 3 cut(s) 185, 192, 496
Bbv12I GWGCWC 1 cut(s) 82
BccI CCATC 3 cut(s) 46, 130, 306
BfaI CTAG 2 cut(s) 189, 252
BfrI CTTAAG 1 cut(s) 317
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 2 cut(s) 68, 130
BmiI GGNNCC 3 cut(s) 70, 292, 329
BmrI ACTGGG 1 cut(s) 81
BmtI GCTAGC 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 81
BpiI GAAGAC 3 cut(s) 185, 192, 496
BsaAI YACGTR 1 cut(s) 471
Bsc4I CCNNNNNNNGG 2 cut(s) 138, 338
Bse1I ACTGG 1 cut(s) 87
BseLI CCNNNNNNNGG 2 cut(s) 138, 338
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 87
BshFI GGCC 1 cut(s) 131
BsiHKAI GWGCWC 1 cut(s) 82
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 2 cut(s) 138, 338
BsmFI GGGAC 1 cut(s) 55
BsnI GGCC 1 cut(s) 131
Bsp1286I GDGCHC 4 cut(s) 82, 214, 293, 332
Bsp143I GATC 3 cut(s) 17, 99, 220
BspACI CCGC 1 cut(s) 418
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 1 cut(s) 217
BspLI GGNNCC 3 cut(s) 70, 292, 329
BspOI GCTAGC 1 cut(s) 255
BspPI GGATC 1 cut(s) 215
BspTI CTTAAG 1 cut(s) 317
BsrI ACTGG 1 cut(s) 87
BssMI GATC 3 cut(s) 17, 99, 220
Bst4CI ACNGT 1 cut(s) 514
Bst6I CTCTTC 1 cut(s) 236
BstAFI CTTAAG 1 cut(s) 317
BstBAI YACGTR 1 cut(s) 471
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 2 cut(s) 225, 362
BstKTI GATC 3 cut(s) 20, 102, 223
BstMBI GATC 3 cut(s) 17, 99, 220
BstNSI RCATGY 1 cut(s) 483
BstV2I GAAGAC 3 cut(s) 185, 192, 496
BsuRI GGCC 1 cut(s) 131
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 253
Cfr13I GGNCC 2 cut(s) 68, 130
CviAII CATG 1 cut(s) 480
CviJI RGCY 9 cut(s) 5, 131, 212, 218, 255, 291, 306, 316, 330
CviKI_1 RGCY 9 cut(s) 5, 131, 212, 218, 255, 291, 306, 316, 330
DdeI CTNAG 2 cut(s) 225, 362
DpnI GATC 3 cut(s) 19, 101, 222
DpnII GATC 3 cut(s) 17, 99, 220
Eam1104I CTCTTC 1 cut(s) 236
EarI CTCTTC 1 cut(s) 236
Eco24I GRGCYC 3 cut(s) 214, 293, 332
Eco47I GGWCC 1 cut(s) 68
Eco57I CTGAAG 2 cut(s) 280, 292
Eco72I CACGTG 1 cut(s) 471
EcoT38I GRGCYC 3 cut(s) 214, 293, 332
FaeI CATG 1 cut(s) 483
FalI AAGNNNNNCTT 2 cut(s) 278, 310
FaqI GGGAC 1 cut(s) 55
FatI CATG 1 cut(s) 479
FriOI GRGCYC 3 cut(s) 214, 293, 332
FspBI CTAG 2 cut(s) 189, 252
HaeIII GGCC 1 cut(s) 131
Hin1II CATG 1 cut(s) 483
HinfI GANTC 1 cut(s) 181
HphI GGTGA 1 cut(s) 295
Hpy188I TCNGA 2 cut(s) 299, 311
Hpy188III TCNNGA 3 cut(s) 103, 224, 395
HpyAV CCTTC 4 cut(s) 166, 269, 280, 304
HpyCH4III ACNGT 1 cut(s) 514
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 5 cut(s) 49, 125, 232, 350, 479
HpyF3I CTNAG 2 cut(s) 225, 362
HpySE526I ACGT 1 cut(s) 470
Hsp92II CATG 1 cut(s) 483
Kzo9I GATC 3 cut(s) 17, 99, 220
LmnI GCTCC 2 cut(s) 296, 327
LpnPI CCDG 7 cut(s) 88, 100, 113, 145, 146, 200, 237
MaeI CTAG 2 cut(s) 189, 252
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 1 cut(s) 107
MalI GATC 3 cut(s) 19, 101, 222
MboI GATC 3 cut(s) 17, 99, 220
MboII GAAGA 9 cut(s) 181, 190, 192, 195, 250, 253, 393, 396, 501
MhlI GDGCHC 4 cut(s) 82, 214, 293, 332
MluCI AATT 4 cut(s) 142, 148, 368, 517
MlyI GAGTC 1 cut(s) 175
MnlI CCTC 4 cut(s) 228, 237, 371, 425
MseI TTAA 4 cut(s) 318, 498, 516, 520
MspCI CTTAAG 1 cut(s) 317
NdeII GATC 3 cut(s) 17, 99, 220
NheI GCTAGC 1 cut(s) 251
NlaIII CATG 1 cut(s) 483
NlaIV GGNNCC 3 cut(s) 70, 292, 329
NspI RCATGY 1 cut(s) 483
PacI TTAATTAA 1 cut(s) 520
PleI GAGTC 1 cut(s) 175
PmaCI CACGTG 1 cut(s) 471
PmlI CACGTG 1 cut(s) 471
PpsI GAGTC 1 cut(s) 175
Ppu21I YACGTR 1 cut(s) 471
PsiI TTATAA 1 cut(s) 147
PspCI CACGTG 1 cut(s) 471
PspN4I GGNNCC 3 cut(s) 70, 292, 329
PspPI GGNCC 2 cut(s) 68, 130
SaqAI TTAA 4 cut(s) 318, 498, 516, 520
Sau3AI GATC 3 cut(s) 17, 99, 220
Sau96I GGNCC 2 cut(s) 68, 130
SchI GAGTC 1 cut(s) 175
SduI GDGCHC 4 cut(s) 82, 214, 293, 332
SetI ASST 6 cut(s) 194, 257, 285, 308, 348, 473
SinI GGWCC 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 4 cut(s) 142, 148, 368, 517
SsiI CCGC 1 cut(s) 418
SspMI CTAG 2 cut(s) 189, 252
TaaI ACNGT 1 cut(s) 514
TaiI ACGT 1 cut(s) 473
TasI AATT 4 cut(s) 142, 148, 368, 517
Tru1I TTAA 4 cut(s) 318, 498, 516, 520
Tru9I TTAA 4 cut(s) 318, 498, 516, 520
TscAI CASTG 1 cut(s) 43
TspRI CASTG 1 cut(s) 43
Vha464I CTTAAG 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 68
XceI RCATGY 1 cut(s) 483
XspI CTAG 2 cut(s) 189, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.