Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001531

Physical Location & Seq

Genomic Coordinates Forward (+)

1558429 .. 1560487

Gene Structure 2059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00157870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAGAAACTGGAAGCTAATATGGAAACCAGAATTAAACAGGTTCAGAAGCTGAGTGCAAAGTTAGATAGAGAGAGACTCCAACTCACTGAAGCAATAGACCTAAAGATGTTTGAGCAGTGGTGTATTGAAAGACGGTTGAGATATCTCAAAAGCCAGAAAGAGGAGCTCGAATCCTGTCTAAAATACAAGAGAAACAAAATGGATCTGGTGCAGCAATTTCTGGAGAAGCTTCGTTTTTCAGACAATGCTTACCGAAAGAAACCAATTAAGTCATGCTTGTCAGAACAAGAGATGAATAAACATAAATTGCATTTCCGGATGGTACATGGAAGCAGGAGTTTCACCAAGAAAAAGCAGCTTTTAAAAGAGATCAAAGTGAGTCAGCAGGAGGATAGTTTTGGTTCATTTTGGACTCAATTGGAAGAACGTTTTCGTGATTCTGAAAATGCAAGATTTATACAGTACCAAATTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

19.46

Weight (kDa)

9.63

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11970
fragaria_vesca	FvH4_2g31530 FvH4_2g31540 FvH4_2g31541 FvH4_2g31550 FvH4_2g31590 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591
malus_domestica	MD08G1065000.v1.1 MD08G1065100.v1.1 MD08G1065200.v1.1 MD15G1056600.v1.1
prunus_persica	Prupe.1G409100_v2.0.a1 Prupe.1G409200_v2.0.a1
pyrus_communis	pycom08g05380 pycom08g05390 pycom15g05300
rosa_chinensis	RchiOBHm_Chr6g0311231
rosa_laevigata	RLG00000010424 RLG00000010425
rosa_multiflora	Rmu_sc0012046.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157850 Rroxscaffold_7G00157860 Rroxscaffold_7G00157870 Rroxscaffold_7G00157880
rosa_rugosa	Rorug06G0386700.1 Rorug06G0386800 Rorug06G0386800
rosa_samantha	Rh6AG500900 Rh6AG501000 Rh6AG501100 Rh6AG501200 Rh6BG511400 Rh6BG511500 Rh6BG511600 Rh6BG511700 Rh6BG511800 Rh6CG517200 Rh6CG517300 Rh6CG517400 Rh6CG517500 Rh6CG517700 Rh6DG503700 Rh6DG503800
rosa_wichuraiana	Rw6G043610 Rw6G043640 Rw6G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	318
AclI	AACGTT	1 cut(s)	430
AclWI	GGATC	1 cut(s)	213
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	2 cut(s)	327, 467
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	131
AluBI	AGCT	5 cut(s)	17, 52, 169, 232, 361
AluI	AGCT	5 cut(s)	17, 52, 169, 232, 361
Alw21I	GWGCWC	1 cut(s)	171
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	213
AlwNI	CAGNNNCTG	1 cut(s)	52
Aor13HI	TCCGGA	1 cut(s)	318
ApeKI	GCWGC	2 cut(s)	214, 358
Asp700I	GAANNNNTTC	1 cut(s)	432
AsuHPI	GGTGA	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	226, 370
BccI	CCATC	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	70
BisI	GCNGC	2 cut(s)	215, 359
BlsI	GCNGC	2 cut(s)	216, 360
BplI	GAGNNNNNCTC	2 cut(s)	63, 95
BpmI	CTGGAG	1 cut(s)	245
BsaWI	WCCGGW	1 cut(s)	318
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	15
BseAI	TCCGGA	1 cut(s)	318
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	1 cut(s)	15
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	226, 370
BsgI	GTGCAG	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	319
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp13I	TCCGGA	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	205, 372
BspCNI	CTCAG	1 cut(s)	45
BspEI	TCCGGA	1 cut(s)	318
BspPI	GGATC	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	15
BssMI	GATC	2 cut(s)	205, 372
Bst4CI	ACNGT	2 cut(s)	138, 465
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	1 cut(s)	327
BstKTI	GATC	2 cut(s)	208, 375
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	2 cut(s)	205, 372
BstV1I	GCAGC	2 cut(s)	226, 370
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	125
BtsIMutI	CAGTG	2 cut(s)	87, 125
CaiI	CAGNNNCTG	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	326, 466
CviAII	CATG	2 cut(s)	276, 329
CviJI	RGCY	6 cut(s)	17, 52, 156, 169, 232, 361
CviKI_1	RGCY	6 cut(s)	17, 52, 156, 169, 232, 361
CviQI	GTAC	2 cut(s)	326, 466
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	2 cut(s)	207, 374
DpnII	GATC	2 cut(s)	205, 372
DraI	TTTAAA	1 cut(s)	366
Ecl136II	GAGCTC	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	171
Eco32I	GATATC	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	111
EcoICRI	GAGCTC	1 cut(s)	169
EcoRV	GATATC	1 cut(s)	146
EcoT38I	GRGCYC	1 cut(s)	171
FaeI	CATG	2 cut(s)	279, 332
FaiI	YATR	5 cut(s)	23, 277, 306, 330, 461
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FatI	CATG	2 cut(s)	275, 328
Fnu4HI	GCNGC	2 cut(s)	215, 359
FokI	GGATG	1 cut(s)	334
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	2 cut(s)	215, 359
GluI	GCNGC	2 cut(s)	215, 359
GsuI	CTGGAG	1 cut(s)	245
HapII	CCGG	1 cut(s)	319
Hin1II	CATG	2 cut(s)	279, 332
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	5 cut(s)	78, 173, 382, 415, 440
HpaII	CCGG	1 cut(s)	319
HphI	GGTGA	1 cut(s)	337
Hpy188I	TCNGA	4 cut(s)	48, 244, 286, 445
Hpy188III	TCNNGA	3 cut(s)	224, 319, 437
HpyCH4III	ACNGT	2 cut(s)	138, 465
HpyCH4IV	ACGT	1 cut(s)	430
HpyCH4V	TGCA	4 cut(s)	59, 214, 313, 452
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	1 cut(s)	430
Hsp92II	CATG	2 cut(s)	279, 332
Kpn2I	TCCGGA	1 cut(s)	318
Kzo9I	GATC	2 cut(s)	205, 372
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	9 cut(s)	26, 43, 170, 190, 194, 209, 322, 332, 374
Lsp1109I	GCAGC	2 cut(s)	226, 370
MaeII	ACGT	1 cut(s)	430
MalI	GATC	2 cut(s)	207, 374
MboI	GATC	2 cut(s)	205, 372
MboII	GAAGA	1 cut(s)	437
MfeI	CAATTG	1 cut(s)	419
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	6 cut(s)	33, 218, 267, 308, 419, 471
MlyI	GAGTC	3 cut(s)	72, 391, 409
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	2 cut(s)	157, 385
MroI	TCCGGA	1 cut(s)	318
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	3 cut(s)	36, 270, 365
MspI	CCGG	1 cut(s)	319
MunI	CAATTG	1 cut(s)	419
NdeII	GATC	2 cut(s)	205, 372
NlaIII	CATG	2 cut(s)	279, 332
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	2 cut(s)	173, 440
PkrI	GCNGC	2 cut(s)	216, 360
PleI	GAGTC	3 cut(s)	72, 390, 409
PpsI	GAGTC	3 cut(s)	72, 390, 409
Psp124BI	GAGCTC	1 cut(s)	171
Psp1406I	AACGTT	1 cut(s)	430
PstNI	CAGNNNCTG	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	2 cut(s)	327, 467
RsaNI	GTAC	2 cut(s)	326, 466
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	3 cut(s)	36, 270, 365
SatI	GCNGC	2 cut(s)	215, 359
Sau3AI	GATC	2 cut(s)	205, 372
SchI	GAGTC	3 cut(s)	72, 391, 409
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	8 cut(s)	19, 45, 54, 105, 171, 234, 363, 433
Sse9I	AATT	6 cut(s)	33, 218, 267, 308, 419, 471
SstI	GAGCTC	1 cut(s)	171
TaaI	ACNGT	2 cut(s)	138, 465
TaiI	ACGT	1 cut(s)	433
TaqI	TCGA	1 cut(s)	171
TasI	AATT	6 cut(s)	33, 218, 267, 308, 419, 471
TfiI	GAWTC	2 cut(s)	173, 440
Tru1I	TTAA	3 cut(s)	36, 270, 365
Tru9I	TTAA	3 cut(s)	36, 270, 365
TscAI	CASTG	2 cut(s)	94, 125
TseI	GCWGC	2 cut(s)	214, 358
TspDTI	ATGAA	2 cut(s)	311, 396
TspRI	CASTG	2 cut(s)	94, 125
XmnI	GAANNNNTTC	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.