Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001531

Physical Location & Seq

Genomic Coordinates Reverse (-)

65874855 .. 65886585

Gene Structure 11731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG503700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGATCTGCTGCAGCAATTTCTGGAGAAGCTTCGTTTTTCGGACAATGCTTACCAAAAGAAACCAATCAAGTCATGCTTGTCAGAACAAGAGATGAATAAACATAACTTGCATTTCCGGATGGTACATGGAAGCAAGAGTTTGGCCAAGGAAAAGCAGCTTCTGAAAGAGATCAATGGGAGCCAGAAGCAAGATGGGGAAGAGGATAGTTTTGATTCATTTTTTAATCAGTGGGAAGAAGATCTTGCATTTGTTTGTGATAATACTGGGAATTATATAAGGTACCATAAGTGGTGGTGGCATATTGATCGGCATGAACAAATTTGGTGGTTGCAACACCAGATGCCATTTGTGATCAGTAAGGGAGATGCAAAAGATCGCGAAGGAGAAATCAGAGAGCTCCTATATATGCAGAATAGAAAGCTGTGGAGTTGTACTGCTAAAGAAAGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

18.36

Weight (kDa)

6.65

Isoelectric Point (pI)

60.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11970
fragaria_vesca	FvH4_2g31530 FvH4_2g31540 FvH4_2g31541 FvH4_2g31550 FvH4_2g31590 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591
malus_domestica	MD08G1065000.v1.1 MD08G1065100.v1.1 MD08G1065200.v1.1 MD15G1056600.v1.1
prunus_persica	Prupe.1G409100_v2.0.a1 Prupe.1G409200_v2.0.a1
pyrus_communis	pycom08g05380 pycom08g05390 pycom15g05300
rosa_chinensis	RchiOBHm_Chr6g0311231
rosa_laevigata	RLG00000010424 RLG00000010425
rosa_multiflora	Rmu_sc0012046.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157850 Rroxscaffold_7G00157860 Rroxscaffold_7G00157870 Rroxscaffold_7G00157880
rosa_rugosa	Rorug06G0386700.1 Rorug06G0386800 Rorug06G0386800
rosa_samantha	Rh6AG500900 Rh6AG501000 Rh6AG501100 Rh6AG501200 Rh6BG511400 Rh6BG511500 Rh6BG511600 Rh6BG511700 Rh6BG511800 Rh6CG517200 Rh6CG517300 Rh6CG517400 Rh6CG517500 Rh6CG517700 Rh6DG503700 Rh6DG503800
rosa_wichuraiana	Rw6G043610 Rw6G043640 Rw6G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	282
AccB1I	GGYRCC	1 cut(s)	282
AccII	CGCG	1 cut(s)	381
AccIII	TCCGGA	1 cut(s)	117
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	321
AfaI	GTAC	3 cut(s)	126, 284, 436
AluBI	AGCT	4 cut(s)	31, 160, 400, 424
AluI	AGCT	4 cut(s)	31, 160, 400, 424
Alw21I	GWGCWC	1 cut(s)	402
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	163
Aor13HI	TCCGGA	1 cut(s)	117
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	3 cut(s)	10, 13, 157
ApoI	RAATTY	1 cut(s)	321
Asp718I	GGTACC	1 cut(s)	282
BalI	TGGCCA	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	282
BanII	GRGCYC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	402
BbvI	GCAGC	2 cut(s)	25, 169
BccI	CCATC	2 cut(s)	115, 188
BcgI	CGANNNNNNTGC	2 cut(s)	290, 324
BclI	TGATCA	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	11
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	3 cut(s)	11, 14, 158
BlsI	GCNGC	3 cut(s)	12, 15, 159
BmiI	GGNNCC	2 cut(s)	182, 284
BmrI	ACTGGG	1 cut(s)	276
BmsI	GCATC	2 cut(s)	333, 358
BmuI	ACTGGG	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	271
BseAI	TCCGGA	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	25, 169
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	146
BshNI	GGYRCC	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	118
BsnI	GGCC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp13I	TCCGGA	1 cut(s)	117
Bsp143I	GATC	6 cut(s)	4, 171, 241, 307, 354, 376
Bsp68I	TCGCGA	1 cut(s)	381
BspANI	GGCC	1 cut(s)	146
BspEI	TCCGGA	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	2 cut(s)	182, 284
BspMAI	CTGCAG	1 cut(s)	15
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	282
BsrI	ACTGG	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	6 cut(s)	4, 171, 241, 307, 354, 376
BssT1I	CCWWGG	1 cut(s)	147
Bst6I	CTCTTC	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	381
BstKTI	GATC	6 cut(s)	7, 174, 244, 310, 357, 379
BstMBI	GATC	6 cut(s)	4, 171, 241, 307, 354, 376
BstSFI	CTRYAG	1 cut(s)	11
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	2 cut(s)	25, 169
BstX2I	RGATCY	2 cut(s)	4, 241
BstYI	RGATCY	2 cut(s)	4, 241
BsuRI	GGCC	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	236
BtuMI	TCGCGA	1 cut(s)	381
CaiI	CAGNNNCTG	1 cut(s)	163
Csp6I	GTAC	3 cut(s)	125, 283, 435
CspCI	CAANNNNNGTGG	2 cut(s)	308, 343
CviAII	CATG	3 cut(s)	75, 128, 314
CviJI	RGCY	6 cut(s)	31, 146, 160, 183, 400, 424
CviKI_1	RGCY	6 cut(s)	31, 146, 160, 183, 400, 424
CviQI	GTAC	3 cut(s)	125, 283, 435
DpnI	GATC	6 cut(s)	6, 173, 243, 309, 356, 378
DpnII	GATC	6 cut(s)	4, 171, 241, 307, 354, 376
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	400
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	402
Eco53kI	GAGCTC	1 cut(s)	400
EcoICRI	GAGCTC	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	3 cut(s)	78, 131, 317
FalI	AAGNNNNNCTT	4 cut(s)	62, 94, 228, 260
FatI	CATG	3 cut(s)	74, 127, 313
FbaI	TGATCA	1 cut(s)	354
Fnu4HI	GCNGC	3 cut(s)	11, 14, 158
FokI	GGATG	1 cut(s)	133
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	3 cut(s)	11, 14, 158
GluI	GCNGC	3 cut(s)	11, 14, 158
GsuI	CTGGAG	1 cut(s)	44
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	1 cut(s)	118
Hin1II	CATG	3 cut(s)	78, 131, 317
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	1 cut(s)	118
Hpy188I	TCNGA	4 cut(s)	43, 85, 165, 395
Hpy188III	TCNNGA	3 cut(s)	23, 118, 380
HpyAV	CCTTC	1 cut(s)	377
HpyCH4V	TGCA	6 cut(s)	13, 112, 248, 334, 371, 412
Hsp92II	CATG	3 cut(s)	78, 131, 317
Kpn2I	TCCGGA	1 cut(s)	117
KpnI	GGTACC	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	6 cut(s)	4, 171, 241, 307, 354, 376
LmnI	GCTCC	2 cut(s)	180, 405
LpnPI	CCDG	5 cut(s)	8, 131, 197, 252, 353
Lsp1109I	GCAGC	2 cut(s)	25, 169
LweI	GCATC	2 cut(s)	333, 358
MalI	GATC	6 cut(s)	6, 173, 243, 309, 356, 378
MboI	GATC	6 cut(s)	4, 171, 241, 307, 354, 376
MboII	GAAGA	3 cut(s)	212, 248, 251
MflI	RGATCY	2 cut(s)	4, 241
MhlI	GDGCHC	1 cut(s)	402
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	3 cut(s)	17, 271, 321
MluNI	TGGCCA	1 cut(s)	146
MnlI	CCTC	1 cut(s)	196
Mox20I	TGGCCA	1 cut(s)	146
MroI	TCCGGA	1 cut(s)	117
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	1 cut(s)	225
Msp20I	TGGCCA	1 cut(s)	146
MspI	CCGG	1 cut(s)	118
MvnI	CGCG	1 cut(s)	381
NdeII	GATC	6 cut(s)	4, 171, 241, 307, 354, 376
NlaIII	CATG	3 cut(s)	78, 131, 317
NlaIV	GGNNCC	2 cut(s)	182, 284
NruI	TCGCGA	1 cut(s)	381
PfeI	GAWTC	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	12, 15, 159
Psp124BI	GAGCTC	1 cut(s)	402
PspN4I	GGNNCC	2 cut(s)	182, 284
PstI	CTGCAG	1 cut(s)	15
PstNI	CAGNNNCTG	1 cut(s)	163
PsuI	RGATCY	2 cut(s)	4, 241
RruI	TCGCGA	1 cut(s)	381
RsaI	GTAC	3 cut(s)	126, 284, 436
RsaNI	GTAC	3 cut(s)	125, 283, 435
SacI	GAGCTC	1 cut(s)	402
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	3 cut(s)	11, 14, 158
Sau3AI	GATC	6 cut(s)	4, 171, 241, 307, 354, 376
SduI	GDGCHC	1 cut(s)	402
SetI	ASST	5 cut(s)	33, 162, 284, 402, 426
SfaNI	GCATC	2 cut(s)	333, 358
SfcI	CTRYAG	1 cut(s)	11
Sse9I	AATT	3 cut(s)	17, 271, 321
SstI	GAGCTC	1 cut(s)	402
StyI	CCWWGG	1 cut(s)	147
TasI	AATT	3 cut(s)	17, 271, 321
TatI	WGTACW	1 cut(s)	434
TfiI	GAWTC	1 cut(s)	215
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	236
TseI	GCWGC	3 cut(s)	10, 13, 157
TspDTI	ATGAA	3 cut(s)	110, 207, 330
TspRI	CASTG	1 cut(s)	236
XapI	RAATTY	1 cut(s)	321
XcmI	CCANNNNNNNNNTGG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.