Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001531

Physical Location & Seq

Genomic Coordinates Reverse (-)

4127307 .. 4128051

Gene Structure 745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g05380.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCTTTTGAAAGAGATCAATGCGAGGCAGAAGGAGGTGGTTGATTCAGTTTCACCATTGGGAAAACATCGTTATTTTCCGCCTTACATAGATACTTGGCACTTGCACCTCGACGAGTATTTTATGGTGATAAACCTGAGGAATGTAGTTGAAGGCCTCCTAAGACAAATCCAAGAACTCAAATGGCGAAGCGCAAGACCGGGAATTATATTTCAAAGGCAATGGGATGGTGAAGCCATTGCTGATCATGCAAGTTATGATGATAATGCTGCTGCCTATTCTATTGCCAATGCCAAGGGAAAGATTTGGGATGCGTTGAGTTCAAAAAAAGCGTTACAAGAACAAATCAGAGTAACTGGCAAGGAGATGGATGAATTAACGAAATCACTGGTGGCCCTGCGGCGCAGGCAGAATATAAAGAGAGCTGGGAGAAAATTGAAGGTCATTGAAAGAGATATAGAATGCTTGAAGAAGAAACTGACATTGATGGATCAGAAGAAAGATGAAGCATACGAGTGCGTTTTTAAATTGAGAAAACAAGAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

21.33

Weight (kDa)

9.52

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11970
fragaria_vesca	FvH4_2g31530 FvH4_2g31540 FvH4_2g31541 FvH4_2g31550 FvH4_2g31590 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591
malus_domestica	MD08G1065000.v1.1 MD08G1065100.v1.1 MD08G1065200.v1.1 MD15G1056600.v1.1
prunus_persica	Prupe.1G409100_v2.0.a1 Prupe.1G409200_v2.0.a1
pyrus_communis	pycom08g05380 pycom08g05390 pycom15g05300
rosa_chinensis	RchiOBHm_Chr6g0311231
rosa_laevigata	RLG00000010424 RLG00000010425
rosa_multiflora	Rmu_sc0012046.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157850 Rroxscaffold_7G00157860 Rroxscaffold_7G00157870 Rroxscaffold_7G00157880
rosa_rugosa	Rorug06G0386700.1 Rorug06G0386800 Rorug06G0386800
rosa_samantha	Rh6AG500900 Rh6AG501000 Rh6AG501100 Rh6AG501200 Rh6BG511400 Rh6BG511500 Rh6BG511600 Rh6BG511700 Rh6BG511800 Rh6CG517200 Rh6CG517300 Rh6CG517400 Rh6CG517500 Rh6CG517700 Rh6DG503700 Rh6DG503800
rosa_wichuraiana	Rw6G043610 Rw6G043640 Rw6G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	80, 400
AclWI	GGATC	1 cut(s)	498
AgsI	TTSAA	7 cut(s)	10, 152, 215, 324, 439, 449, 469
AluBI	AGCT	1 cut(s)	425
AluI	AGCT	1 cut(s)	425
AlwI	GGATC	1 cut(s)	498
AoxI	GGCC	2 cut(s)	154, 393
ApeKI	GCWGC	2 cut(s)	269, 272
AspLEI	GCGC	2 cut(s)	194, 405
AspS9I	GGNCC	1 cut(s)	394
AsuC2I	CCSGG	1 cut(s)	201
AsuHPI	GGTGA	3 cut(s)	45, 139, 242
AxyI	CCTNAGG	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	256, 259
BccI	CCATC	3 cut(s)	221, 361, 481
BclI	TGATCA	1 cut(s)	244
BcnI	CCSGG	1 cut(s)	201
BisI	GCNGC	3 cut(s)	270, 273, 401
BlsI	GCNGC	3 cut(s)	271, 274, 402
Bme1390I	CCNGG	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	394
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	301
BpuMI	CCSGG	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	294
Bse1I	ACTGG	2 cut(s)	361, 393
Bse21I	CCTNAGG	1 cut(s)	137
Bse3DI	GCAATG	2 cut(s)	227, 237
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	3 cut(s)	232, 316, 376
BseMI	GCAATG	2 cut(s)	227, 237
BseMII	CTCAG	1 cut(s)	128
BseNI	ACTGG	2 cut(s)	361, 393
BseXI	GCAGC	2 cut(s)	256, 259
BseYI	CCCAGC	1 cut(s)	425
BshFI	GGCC	2 cut(s)	156, 395
BsiSI	CCGG	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	467
BsnI	GGCC	2 cut(s)	156, 395
Bsp143I	GATC	3 cut(s)	15, 244, 490
BspACI	CCGC	2 cut(s)	80, 400
BspANI	GGCC	2 cut(s)	156, 395
BspCNI	CTCAG	1 cut(s)	129
BspPI	GGATC	1 cut(s)	498
BsrDI	GCAATG	2 cut(s)	227, 237
BsrI	ACTGG	2 cut(s)	361, 393
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	3 cut(s)	15, 244, 490
BssT1I	CCWWGG	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	407
BstDEI	CTNAG	2 cut(s)	137, 161
BstF5I	GGATG	3 cut(s)	232, 316, 376
BstHHI	GCGC	2 cut(s)	194, 405
BstKTI	GATC	3 cut(s)	18, 247, 493
BstMBI	GATC	3 cut(s)	15, 244, 490
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 406
BstSCI	CCNGG	1 cut(s)	199
BstV1I	GCAGC	2 cut(s)	256, 259
Bsu36I	CCTNAGG	1 cut(s)	137
BsuRI	GGCC	2 cut(s)	156, 395
BtsCI	GGATG	3 cut(s)	232, 316, 376
BtsIMutI	CAGTG	1 cut(s)	386
Cac8I	GCNNGC	1 cut(s)	407
CfoI	GCGC	2 cut(s)	194, 405
Cfr13I	GGNCC	1 cut(s)	394
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	4 cut(s)	156, 236, 395, 425
CviKI_1	RGCY	4 cut(s)	156, 236, 395, 425
DdeI	CTNAG	2 cut(s)	137, 161
DpnI	GATC	3 cut(s)	17, 246, 492
DpnII	GATC	3 cut(s)	15, 244, 490
DraI	TTTAAA	1 cut(s)	526
EciI	GGCGGA	1 cut(s)	69
Eco130I	CCWWGG	1 cut(s)	294
Eco147I	AGGCCT	1 cut(s)	156
Eco81I	CCTNAGG	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	1 cut(s)	251
FaiI	YATR	8 cut(s)	89, 125, 209, 249, 258, 416, 458, 511
FatI	CATG	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	244
Fnu4HI	GCNGC	3 cut(s)	270, 273, 401
FokI	GGATG	3 cut(s)	239, 323, 383
Fsp4HI	GCNGC	3 cut(s)	270, 273, 401
GlaI	GCGC	2 cut(s)	193, 404
GluI	GCNGC	3 cut(s)	270, 273, 401
GsaI	CCCAGC	1 cut(s)	429
HaeIII	GGCC	2 cut(s)	156, 395
HapII	CCGG	1 cut(s)	200
HhaI	GCGC	2 cut(s)	194, 405
Hin1II	CATG	1 cut(s)	251
Hin6I	GCGC	2 cut(s)	192, 403
HinP1I	GCGC	2 cut(s)	192, 403
HinfI	GANTC	1 cut(s)	44
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	3 cut(s)	45, 139, 242
Hpy188I	TCNGA	2 cut(s)	350, 495
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	3 cut(s)	25, 146, 433
HpyCH4V	TGCA	2 cut(s)	106, 251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 406
HpyF3I	CTNAG	2 cut(s)	137, 161
Hsp92II	CATG	1 cut(s)	251
HspAI	GCGC	2 cut(s)	192, 403
Ksp22I	TGATCA	1 cut(s)	244
Kzo9I	GATC	3 cut(s)	15, 244, 490
LpnPI	CCDG	7 cut(s)	149, 213, 342, 374, 391, 410, 411
Lsp1109I	GCAGC	2 cut(s)	256, 259
LweI	GCATC	1 cut(s)	301
MaeIII	GTNAC	2 cut(s)	333, 352
MalI	GATC	3 cut(s)	17, 246, 492
MboI	GATC	3 cut(s)	15, 244, 490
MboII	GAAGA	3 cut(s)	481, 484, 508
MluCI	AATT	4 cut(s)	204, 374, 434, 527
MnlI	CCTC	5 cut(s)	18, 28, 119, 132, 167
MseI	TTAA	3 cut(s)	377, 525, 547
MslI	CAYNNNNRTG	1 cut(s)	514
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	467
MwoI	GCNNNNNNNGC	2 cut(s)	248, 406
NciI	CCSGG	1 cut(s)	201
NdeII	GATC	3 cut(s)	15, 244, 490
NlaIII	CATG	1 cut(s)	251
PceI	AGGCCT	1 cut(s)	156
PctI	GAATGC	1 cut(s)	467
PfeI	GAWTC	1 cut(s)	44
PkrI	GCNGC	3 cut(s)	271, 274, 402
PspFI	CCCAGC	1 cut(s)	425
PspPI	GGNCC	1 cut(s)	394
RseI	CAYNNNNRTG	1 cut(s)	514
SaqAI	TTAA	3 cut(s)	377, 525, 547
SatI	GCNGC	3 cut(s)	270, 273, 401
Sau3AI	GATC	3 cut(s)	15, 244, 490
Sau96I	GGNCC	1 cut(s)	394
ScrFI	CCNGG	1 cut(s)	201
SetI	ASST	5 cut(s)	39, 111, 138, 427, 444
SfaNI	GCATC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	514
Sse9I	AATT	4 cut(s)	204, 374, 434, 527
SseBI	AGGCCT	1 cut(s)	156
SsiI	CCGC	2 cut(s)	80, 400
StuI	AGGCCT	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	199
StyI	CCWWGG	1 cut(s)	294
TaqI	TCGA	1 cut(s)	111
TasI	AATT	4 cut(s)	204, 374, 434, 527
TauI	GCSGC	1 cut(s)	403
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	3 cut(s)	377, 525, 547
Tru9I	TTAA	3 cut(s)	377, 525, 547
TscAI	CASTG	1 cut(s)	393
TseI	GCWGC	2 cut(s)	269, 272
TspDTI	ATGAA	2 cut(s)	387, 519
TspRI	CASTG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.