MD08G1065200.v1.1

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0001531
Physical Location & Seq
Reverse (-)
5198428 .. 5198814
387 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1065200.v1.1.491

Sequence Viewer

Length: 387 bp
ATGGAAGAAGACTACAGCAGATCAAGGTCGTCGTACGGCGGCGGCGGGAATAATATGCAGGTGGGAAGCTACTATGGACACCCAACGAGGCCGCCACCCCCCACTTCCTCCTATGAGCTGAGGAGCTACAGTGTTTCATATGCACAAACCCAGAAGGCTAATCAGAATTATAACTATAATAACAGGGAGATTAAGCTGAAAAAAGGGAAAAGCATTTCTGGGTCGTCTTCGAATTGGGGGGTCCTGGCTGATCCGGAGTTGCAGAGGAAGAAGAGGGTTGCGAGCTACAAGATGTACTCTGTGGAGGGGAAGATGAAGGGCTCGTTCAGGAAAAGCTGCAGGTGGCTTAAAGATAAGTACACCCAAGTGCTTTATGGCTGGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

129

Amino Acids

14.68

Weight (kDa)

9.87

Isoelectric Point (pI)

53.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 83 - 126 1.7e-24 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 171
AarI CACCTGC 2 cut(s) 49, 330
Acc36I ACCTGC 2 cut(s) 49, 330
AccIII TCCGGA 1 cut(s) 253
AciI CCGC 4 cut(s) 39, 42, 45, 92
AclWI GGATC 1 cut(s) 245
AfaI GTAC 3 cut(s) 35, 296, 359
AjnI CCWGG 1 cut(s) 243
AleI CACNNNNGTG 1 cut(s) 365
AluBI AGCT 6 cut(s) 69, 118, 126, 196, 285, 336
AluI AGCT 6 cut(s) 69, 118, 126, 196, 285, 336
AlwI GGATC 1 cut(s) 245
Aor13HI TCCGGA 1 cut(s) 253
AoxI GGCC 1 cut(s) 89
ApeKI GCWGC 1 cut(s) 336
AspS9I GGNCC 1 cut(s) 241
AsuII TTCGAA 1 cut(s) 230
AvaII GGWCC 1 cut(s) 241
BanII GRGCYC 1 cut(s) 323
BbsI GAAGAC 2 cut(s) 15, 219
BbvCI CCTCAGC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 323
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 245
BfmI CTRYAG 3 cut(s) 13, 127, 337
BfuAI ACCTGC 2 cut(s) 49, 330
BisI GCNGC 4 cut(s) 40, 43, 92, 337
BlsI GCNGC 4 cut(s) 41, 44, 93, 338
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 242
BmrFI CCNGG 1 cut(s) 245
BpiI GAAGAC 2 cut(s) 15, 219
Bpu10I CCTNAGC 1 cut(s) 119
Bpu14I TTCGAA 1 cut(s) 230
BsaWI WCCGGW 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
BseAI TCCGGA 1 cut(s) 253
BseBI CCWGG 1 cut(s) 245
BseMII CTCAG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 323
BshFI GGCC 1 cut(s) 91
BsiSI CCGG 1 cut(s) 254
BsiWI CGTACG 1 cut(s) 33
BsnI GGCC 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 323
Bsp13I TCCGGA 1 cut(s) 253
Bsp143I GATC 2 cut(s) 20, 250
BspACI CCGC 4 cut(s) 39, 42, 45, 92
BspANI GGCC 1 cut(s) 91
BspCNI CTCAG 1 cut(s) 111
BspEI TCCGGA 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 242
BspMAI CTGCAG 1 cut(s) 341
BspMI ACCTGC 2 cut(s) 49, 330
BspPI GGATC 1 cut(s) 245
BspT104I TTCGAA 1 cut(s) 230
BssMI GATC 2 cut(s) 20, 250
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 266
BstBI TTCGAA 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 119
BstKTI GATC 2 cut(s) 23, 253
BstMBI GATC 2 cut(s) 20, 250
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 3 cut(s) 13, 127, 337
BstV1I GCAGC 1 cut(s) 323
BstV2I GAAGAC 2 cut(s) 15, 219
BsuRI GGCC 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 136
BveI ACCTGC 2 cut(s) 49, 330
Cac8I GCNNGC 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 241
Csp6I GTAC 3 cut(s) 34, 295, 358
CviQI GTAC 3 cut(s) 34, 295, 358
DdeI CTNAG 1 cut(s) 119
DpnI GATC 2 cut(s) 22, 252
DpnII GATC 2 cut(s) 20, 250
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 243
EcoT38I GRGCYC 1 cut(s) 323
FaiI YATR 8 cut(s) 56, 75, 114, 139, 141, 171, 177, 375
FauI CCCGC 1 cut(s) 38
FauNDI CATATG 1 cut(s) 139
Fnu4HI GCNGC 4 cut(s) 40, 43, 92, 337
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 4 cut(s) 40, 43, 92, 337
GluI GCNGC 4 cut(s) 40, 43, 92, 337
HaeIII GGCC 1 cut(s) 91
HapII CCGG 1 cut(s) 254
HpaII CCGG 1 cut(s) 254
Hpy166II GTNNAC 1 cut(s) 360
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 3 cut(s) 254, 328, 384
Hpy8I GTNNAC 1 cut(s) 360
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 148, 310
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 4 cut(s) 58, 143, 262, 339
HpyF3I CTNAG 1 cut(s) 119
Kpn2I TCCGGA 1 cut(s) 253
Kzo9I GATC 2 cut(s) 20, 250
LmnI GCTCC 1 cut(s) 123
Lsp1109I GCAGC 1 cut(s) 323
MalI GATC 2 cut(s) 22, 252
MboI GATC 2 cut(s) 20, 250
MboII GAAGA 6 cut(s) 17, 20, 219, 280, 283, 322
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 2 cut(s) 166, 232
MnlI CCTC 6 cut(s) 81, 114, 118, 258, 267, 298
MroI TCCGGA 1 cut(s) 253
MseI TTAA 2 cut(s) 192, 348
MslI CAYNNNNRTG 1 cut(s) 365
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 245
MvaI CCWGG 1 cut(s) 245
NdeI CATATG 1 cut(s) 139
NdeII GATC 2 cut(s) 20, 250
NlaIV GGNNCC 1 cut(s) 242
NspV TTCGAA 1 cut(s) 230
OliI CACNNNNGTG 1 cut(s) 365
PaqCI CACCTGC 2 cut(s) 49, 330
Pfl23II CGTACG 1 cut(s) 33
PkrI GCNGC 4 cut(s) 41, 44, 93, 338
PpuMI RGGWCCY 1 cut(s) 241
PsiI TTATAA 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspLI CGTACG 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 242
PspPI GGNCC 1 cut(s) 241
PspPPI RGGWCCY 1 cut(s) 241
PstI CTGCAG 1 cut(s) 341
RsaI GTAC 3 cut(s) 35, 296, 359
RsaNI GTAC 3 cut(s) 34, 295, 358
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 2 cut(s) 192, 348
SatI GCNGC 4 cut(s) 40, 43, 92, 337
Sau3AI GATC 2 cut(s) 20, 250
Sau96I GGNCC 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 1 cut(s) 323
SetI ASST 9 cut(s) 29, 63, 71, 120, 128, 198, 287, 338, 344
SfcI CTRYAG 3 cut(s) 13, 127, 337
SfuI TTCGAA 1 cut(s) 230
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 365
Sse9I AATT 2 cut(s) 166, 232
SsiI CCGC 4 cut(s) 39, 42, 45, 92
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 131
TaqI TCGA 1 cut(s) 230
TasI AATT 2 cut(s) 166, 232
TatI WGTACW 2 cut(s) 294, 357
TauI GCSGC 3 cut(s) 42, 45, 94
Tru1I TTAA 2 cut(s) 192, 348
Tru9I TTAA 2 cut(s) 192, 348
TscAI CASTG 1 cut(s) 136
TseI GCWGC 1 cut(s) 336
TspDTI ATGAA 2 cut(s) 126, 329
TspRI CASTG 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 241
XcmI CCANNNNNNNNNTGG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.