Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001531

Physical Location & Seq

Genomic Coordinates Reverse (-)

67525658 .. 67525876

Gene Structure 219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG500900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGATCAAGTTATACCGGTACCCCATTATAATTCATCGGCCTCAAATCATGCACATCAGACAAATCGTGCTCGGCTTTGAATTAATCAATAGGCATCAACTGGTGGCTATGGAAAAGGATATAGAAGCACTGATGAAGAAATTGCCATTGATAGATCAGAAGAAAGATGAAGCACACCAATGCCTTCTCAAACTCAGAAAACAGCAGGCATTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

72

Amino Acids

8.7

Weight (kDa)

9.84

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11970
fragaria_vesca	FvH4_2g31530 FvH4_2g31540 FvH4_2g31541 FvH4_2g31550 FvH4_2g31590 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591
malus_domestica	MD08G1065000.v1.1 MD08G1065100.v1.1 MD08G1065200.v1.1 MD15G1056600.v1.1
prunus_persica	Prupe.1G409100_v2.0.a1 Prupe.1G409200_v2.0.a1
pyrus_communis	pycom08g05380 pycom08g05390 pycom15g05300
rosa_chinensis	RchiOBHm_Chr6g0311231
rosa_laevigata	RLG00000010424 RLG00000010425
rosa_multiflora	Rmu_sc0012046.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157850 Rroxscaffold_7G00157860 Rroxscaffold_7G00157870 Rroxscaffold_7G00157880
rosa_rugosa	Rorug06G0386700.1 Rorug06G0386800 Rorug06G0386800
rosa_samantha	Rh6AG500900 Rh6AG501000 Rh6AG501100 Rh6AG501200 Rh6BG511400 Rh6BG511500 Rh6BG511600 Rh6BG511700 Rh6BG511800 Rh6CG517200 Rh6CG517300 Rh6CG517400 Rh6CG517500 Rh6CG517700 Rh6DG503700 Rh6DG503800
rosa_wichuraiana	Rw6G043610 Rw6G043640 Rw6G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	29
Acc65I	GGTACC	1 cut(s)	18
AccB1I	GGYRCC	1 cut(s)	18
AfaI	GTAC	1 cut(s)	20
AgeI	ACCGGT	1 cut(s)	15
AgsI	TTSAA	1 cut(s)	80
Alw21I	GWGCWC	1 cut(s)	72
AoxI	GGCC	1 cut(s)	38
AseI	ATTAAT	1 cut(s)	83
AsiGI	ACCGGT	1 cut(s)	15
Asp718I	GGTACC	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	72
BclI	TGATCA	1 cut(s)	3
BmiI	GGNNCC	1 cut(s)	20
BmsI	GCATC	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	15
Bse118I	RCCGGY	1 cut(s)	15
Bse1I	ACTGG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	208
BseNI	ACTGG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	40
BshNI	GGYRCC	1 cut(s)	18
BshTI	ACCGGT	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	16
BsnI	GGCC	1 cut(s)	40
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp143I	GATC	2 cut(s)	3, 154
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	20
BspT107I	GGYRCC	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	105
BssAI	RCCGGY	1 cut(s)	15
BssMI	GATC	2 cut(s)	3, 154
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	194
BstKTI	GATC	2 cut(s)	6, 157
BstMBI	GATC	2 cut(s)	3, 154
BsuRI	GGCC	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	207
Cfr10I	RCCGGY	1 cut(s)	15
Csp6I	GTAC	1 cut(s)	19
CspAI	ACCGGT	1 cut(s)	15
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	3 cut(s)	40, 75, 107
CviKI_1	RGCY	3 cut(s)	40, 75, 107
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	2 cut(s)	5, 156
DpnII	GATC	2 cut(s)	3, 154
FaeI	CATG	1 cut(s)	52
FaiI	YATR	5 cut(s)	13, 29, 50, 110, 122
FatI	CATG	1 cut(s)	48
FbaI	TGATCA	1 cut(s)	3
HaeIII	GGCC	1 cut(s)	40
HapII	CCGG	1 cut(s)	16
Hin1II	CATG	1 cut(s)	52
HpaII	CCGG	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	59, 159, 197
HpyAV	CCTTC	1 cut(s)	194
HpyCH4V	TGCA	1 cut(s)	52
HpyF3I	CTNAG	1 cut(s)	194
Hsp92II	CATG	1 cut(s)	52
KpnI	GGTACC	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 154
LpnPI	CCDG	3 cut(s)	29, 86, 191
LweI	GCATC	1 cut(s)	103
MalI	GATC	2 cut(s)	5, 156
MboI	GATC	2 cut(s)	3, 154
MboII	GAAGA	2 cut(s)	148, 172
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	3 cut(s)	30, 80, 140
MnlI	CCTC	1 cut(s)	51
MseI	TTAA	2 cut(s)	83, 213
MslI	CAYNNNNRTG	1 cut(s)	178
MspI	CCGG	1 cut(s)	16
NdeII	GATC	2 cut(s)	3, 154
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	20
NmeAIII	GCCGAG	1 cut(s)	51
PinAI	ACCGGT	1 cut(s)	15
PshBI	ATTAAT	1 cut(s)	83
PsiI	TTATAA	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	20
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	83, 213
Sau3AI	GATC	2 cut(s)	3, 154
SduI	GDGCHC	1 cut(s)	72
SfaNI	GCATC	1 cut(s)	103
SgeI	CNNG	6 cut(s)	19, 28, 61, 79, 83, 113
SmiMI	CAYNNNNRTG	1 cut(s)	178
Sse9I	AATT	3 cut(s)	30, 80, 140
TasI	AATT	3 cut(s)	30, 80, 140
Tru1I	TTAA	2 cut(s)	83, 213
Tru9I	TTAA	2 cut(s)	83, 213
TscAI	CASTG	1 cut(s)	135
TspDTI	ATGAA	3 cut(s)	23, 149, 183
TspRI	CASTG	1 cut(s)	135
VspI	ATTAAT	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.