Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001531

Physical Location & Seq

Genomic Coordinates Reverse (-)

70720878 .. 70722236

Gene Structure 1359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG511600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGATCTATTGCAAATGCTGGTAGACAAGATTCATTGCACTGACAACACCTACCATAAAAATTCAATTAAGGAATGCTTGTCAGCACAAGAAATGAATAATCATAAATTGCATTGCCAGATGGTACATGGAAGCAAGAGTTTGAGAAAGGAAAAGCAGCTTTTGGAAGATATGAAACTGAGCCAGCAGGAGGATAAGTTTGTTTCATTTTGGACTCAATTGGAAGAACAACTTGGAGTTTATCATGCTGATTGGCGCTTTGATCCAATGAAACAGATTTTGTTGTTGCATCACCAGATGCCAGTTTTGATCATTACAGGAGATGCAGTTAAAGACCGCATACTAGAATTCAGAGATCTTGAATGGAGAATACAAAGTTGTGGAGTTGTACTGCGAAATGAATATGAAGCCATTGCTATTAATAATGTGAATGGTAACTCTGCTGTGAAGGGAAAAACTTGGAGTCCTTTGGGTTCAAAAAAAGCCTTACAGGAGCAAGTTAAGGTTGCTGGTAAGAAAATAGATGAATTGAGAAAAACCCAATTGGCTTTTGGTCTTGGGAAAATAATTAGTCAAGTTGAGGGAGAATCAGAAGCCATGAAAAGGGGTATAGATTCATGGAGGAAGAAATTTCCAGAGTTAAATCAGAGGAAAGATAAATTATATTTGCACTTTTTGAAACCCATAGATGAACAGCCATGTTCCATGAGGTTGGAAACTTTATCTATTACTACTGACTCAGTAGTTTATCTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

252

Amino Acids

29.25

Weight (kDa)

8.48

Isoelectric Point (pI)

33.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11970
fragaria_vesca	FvH4_2g31530 FvH4_2g31540 FvH4_2g31541 FvH4_2g31550 FvH4_2g31590 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591
malus_domestica	MD08G1065000.v1.1 MD08G1065100.v1.1 MD08G1065200.v1.1 MD15G1056600.v1.1
prunus_persica	Prupe.1G409100_v2.0.a1 Prupe.1G409200_v2.0.a1
pyrus_communis	pycom08g05380 pycom08g05390 pycom15g05300
rosa_chinensis	RchiOBHm_Chr6g0311231
rosa_laevigata	RLG00000010424 RLG00000010425
rosa_multiflora	Rmu_sc0012046.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157850 Rroxscaffold_7G00157860 Rroxscaffold_7G00157870 Rroxscaffold_7G00157880
rosa_rugosa	Rorug06G0386700.1 Rorug06G0386800 Rorug06G0386800
rosa_samantha	Rh6AG500900 Rh6AG501000 Rh6AG501100 Rh6AG501200 Rh6BG511400 Rh6BG511500 Rh6BG511600 Rh6BG511700 Rh6BG511800 Rh6CG517200 Rh6CG517300 Rh6CG517400 Rh6CG517500 Rh6CG517700 Rh6DG503700 Rh6DG503800
rosa_wichuraiana	Rw6G043610 Rw6G043640 Rw6G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	24
AciI	CCGC	1 cut(s)	337
AclWI	GGATC	2 cut(s)	12, 257
AcsI	RAATTY	3 cut(s)	61, 347, 629
AfaI	GTAC	2 cut(s)	126, 390
AfiI	CCNNNNNNNGG	2 cut(s)	190, 603
AgsI	TTSAA	4 cut(s)	66, 362, 477, 679
AjuI	GAANNNNNNNTTGG	2 cut(s)	216, 248
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
AlwI	GGATC	2 cut(s)	12, 257
ApeKI	GCWGC	1 cut(s)	157
ApoI	RAATTY	3 cut(s)	61, 347, 629
AseI	ATTAAT	1 cut(s)	420
AspLEI	GCGC	1 cut(s)	258
AsuHPI	GGTGA	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	1 cut(s)	115
BclI	TGATCA	1 cut(s)	309
BfaI	CTAG	1 cut(s)	344
BfoI	RGCGCY	1 cut(s)	259
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	1 cut(s)	158
BlsI	GCNGC	1 cut(s)	159
BmsI	GCATC	3 cut(s)	288, 298, 313
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 312, 342
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 603
Bse1I	ACTGG	1 cut(s)	302
Bse3DI	GCAATG	3 cut(s)	34, 112, 411
BseLI	CCNNNNNNNGG	2 cut(s)	190, 603
BseMI	GCAATG	3 cut(s)	34, 112, 411
BseMII	CTCAG	2 cut(s)	170, 753
BseNI	ACTGG	1 cut(s)	302
BseXI	GCAGC	1 cut(s)	169
BslI	CCNNNNNNNGG	2 cut(s)	190, 603
BsmI	GAATGC	1 cut(s)	80
Bsp143I	GATC	4 cut(s)	4, 262, 309, 355
BspACI	CCGC	1 cut(s)	337
BspCNI	CTCAG	2 cut(s)	171, 752
BspPI	GGATC	2 cut(s)	12, 257
BsrDI	GCAATG	3 cut(s)	34, 112, 411
BsrI	ACTGG	1 cut(s)	302
BssMI	GATC	4 cut(s)	4, 262, 309, 355
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	2 cut(s)	179, 739
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	4 cut(s)	7, 265, 312, 358
BstMBI	GATC	4 cut(s)	4, 262, 309, 355
BstV1I	GCAGC	1 cut(s)	169
BstX2I	RGATCY	2 cut(s)	4, 355
BstXI	CCANNNNNNTGG	1 cut(s)	712
BstYI	RGATCY	2 cut(s)	4, 355
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	185
CfoI	GCGC	1 cut(s)	258
Csp6I	GTAC	2 cut(s)	125, 389
CviAII	CATG	6 cut(s)	128, 245, 598, 618, 699, 706
CviJI	RGCY	7 cut(s)	160, 183, 410, 485, 548, 596, 697
CviKI_1	RGCY	7 cut(s)	160, 183, 410, 485, 548, 596, 697
CviQI	GTAC	2 cut(s)	125, 389
DdeI	CTNAG	2 cut(s)	179, 739
DpnI	GATC	4 cut(s)	6, 264, 311, 357
DpnII	GATC	4 cut(s)	4, 262, 309, 355
EcoRI	GAATTC	1 cut(s)	347
FaeI	CATG	6 cut(s)	131, 248, 601, 621, 702, 709
FalI	AAGNNNNNCTT	4 cut(s)	62, 94, 216, 248
FatI	CATG	6 cut(s)	127, 244, 597, 617, 698, 705
FbaI	TGATCA	1 cut(s)	309
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	158
FspBI	CTAG	1 cut(s)	344
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	1 cut(s)	158
HaeII	RGCGCY	1 cut(s)	259
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	6 cut(s)	131, 248, 601, 621, 702, 709
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HinfI	GANTC	6 cut(s)	31, 214, 463, 587, 614, 737
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	4 cut(s)	353, 592, 648, 758
Hpy188III	TCNNGA	2 cut(s)	359, 635
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	442
HpyCH4V	TGCA	6 cut(s)	13, 39, 112, 289, 326, 670
HpyF3I	CTNAG	2 cut(s)	179, 739
Hsp92II	CATG	6 cut(s)	131, 248, 601, 621, 702, 709
HspAI	GCGC	1 cut(s)	256
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	4 cut(s)	4, 262, 309, 355
LmnI	GCTCC	1 cut(s)	493
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	3 cut(s)	288, 298, 313
MaeI	CTAG	1 cut(s)	344
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	4 cut(s)	6, 264, 311, 357
MboI	GATC	4 cut(s)	4, 262, 309, 355
MboII	GAAGA	3 cut(s)	179, 236, 637
MfeI	CAATTG	2 cut(s)	218, 542
MflI	RGATCY	2 cut(s)	4, 355
MlyI	GAGTC	3 cut(s)	208, 472, 731
MmeI	TCCRAC	1 cut(s)	693
MnlI	CCTC	5 cut(s)	184, 574, 615, 642, 702
MseI	TTAA	5 cut(s)	69, 330, 420, 501, 641
MunI	CAATTG	2 cut(s)	218, 542
Mva1269I	GAATGC	1 cut(s)	80
NdeII	GATC	4 cut(s)	4, 262, 309, 355
NlaIII	CATG	6 cut(s)	131, 248, 601, 621, 702, 709
PctI	GAATGC	1 cut(s)	80
PfeI	GAWTC	3 cut(s)	31, 587, 614
PkrI	GCNGC	1 cut(s)	159
PleI	GAGTC	3 cut(s)	208, 471, 731
PpsI	GAGTC	3 cut(s)	208, 471, 731
PshBI	ATTAAT	1 cut(s)	420
PsuI	RGATCY	2 cut(s)	4, 355
RsaI	GTAC	2 cut(s)	126, 390
RsaNI	GTAC	2 cut(s)	125, 389
SaqAI	TTAA	5 cut(s)	69, 330, 420, 501, 641
SatI	GCNGC	1 cut(s)	158
Sau3AI	GATC	4 cut(s)	4, 262, 309, 355
SchI	GAGTC	3 cut(s)	208, 472, 731
SetI	ASST	4 cut(s)	53, 162, 507, 713
SfaNI	GCATC	3 cut(s)	288, 298, 313
SsiI	CCGC	1 cut(s)	337
SspMI	CTAG	1 cut(s)	344
TatI	WGTACW	1 cut(s)	388
TfiI	GAWTC	3 cut(s)	31, 587, 614
Tru1I	TTAA	5 cut(s)	69, 330, 420, 501, 641
Tru9I	TTAA	5 cut(s)	69, 330, 420, 501, 641
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	1 cut(s)	157
TspRI	CASTG	1 cut(s)	46
VspI	ATTAAT	1 cut(s)	420
XapI	RAATTY	3 cut(s)	61, 347, 629
XcmI	CCANNNNNNNNNTGG	2 cut(s)	125, 548
XmiI	GTMKAC	1 cut(s)	24
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.