Rh6CG517400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001531
Physical Location & Seq
Reverse (-)
67451016 .. 67452383
1368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG517400.1

Sequence Viewer

Length: 603 bp
ATGAAGAAAATGGATCTATTGCAAATACTGGTAGACAAGATTCGTTGCACTGACAACACCTACCAAAAAAATTCAATTAAGGAATGCTTGTCAGCACAAGAAATGAATAATCATAAATTGCATTGCCAGATGGTACATGGAAGCAAGAGTTTGAGAAAGGAAAAGCAGCTTTTGGAAGATATGAAACTGAGCCAGCAGGAGGATAAGTTTGTTTCATTTTGGACTCAATTGGAAGAAGAACTTGGTGTTTATCATGCTGATTGGCGCTTCGATCCAATGAAACAGATTTTGTTGGAGAAACTCGGAGTCCTTTGGGTTAAAAAAAAAGCCTTACAGGAGCAAGTTAAGGTTGCTGGTAAGAAAATAGATGAATTGAGAAAAACCCAATTGGCTCTTGGTCTTGGGAAAATAATTAGTCAAGTTGAGAGAGAATCAGAAGCCATGAAAAGGGGTATAGATTCATGGAGGAAGAAATTTCCAGAGTTAAATCAGAGGAAAGATAAATTATATTTGCACTTTTTGATACCTATAGATGAACAGCCATGTTCCATGAGGTTGGAAACTTTATCTATTACTACTGACTCAGTAGTTTATCTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

200

Amino Acids

23.58

Weight (kDa)

9.03

Isoelectric Point (pI)

35.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 33
AclWI GGATC 2 cut(s) 21, 266
AcsI RAATTY 2 cut(s) 70, 473
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 2 cut(s) 199, 447
AgsI TTSAA 1 cut(s) 75
AjuI GAANNNNNNNTTGG 2 cut(s) 225, 257
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AlwI GGATC 2 cut(s) 21, 266
ApeKI GCWGC 1 cut(s) 166
ApoI RAATTY 2 cut(s) 70, 473
AspLEI GCGC 1 cut(s) 267
BbvI GCAGC 1 cut(s) 178
BccI CCATC 1 cut(s) 124
BfmI CTRYAG 1 cut(s) 528
BfoI RGCGCY 1 cut(s) 268
BisI GCNGC 1 cut(s) 167
BlsI GCNGC 1 cut(s) 168
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 447
Bse1I ACTGG 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 121
BseLI CCNNNNNNNGG 2 cut(s) 199, 447
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 2 cut(s) 179, 597
BseNI ACTGG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 178
BslI CCNNNNNNNGG 2 cut(s) 199, 447
BsmI GAATGC 1 cut(s) 89
Bsp143I GATC 2 cut(s) 13, 271
BspCNI CTCAG 2 cut(s) 180, 596
BspPI GGATC 2 cut(s) 21, 266
BsrDI GCAATG 1 cut(s) 121
BsrI ACTGG 1 cut(s) 33
BssMI GATC 2 cut(s) 13, 271
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 188, 583
BstH2I RGCGCY 1 cut(s) 268
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 2 cut(s) 16, 274
BstMBI GATC 2 cut(s) 13, 271
BstSFI CTRYAG 1 cut(s) 528
BstV1I GCAGC 1 cut(s) 178
BstX2I RGATCY 1 cut(s) 13
BstXI CCANNNNNNTGG 1 cut(s) 556
BstYI RGATCY 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 48
Cac8I GCNNGC 1 cut(s) 194
CfoI GCGC 1 cut(s) 267
Csp6I GTAC 1 cut(s) 134
CviAII CATG 6 cut(s) 137, 254, 442, 462, 543, 550
CviJI RGCY 6 cut(s) 169, 192, 329, 392, 440, 541
CviKI_1 RGCY 6 cut(s) 169, 192, 329, 392, 440, 541
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 2 cut(s) 188, 583
DpnI GATC 2 cut(s) 15, 273
DpnII GATC 2 cut(s) 13, 271
FaeI CATG 6 cut(s) 140, 257, 445, 465, 546, 553
FalI AAGNNNNNCTT 4 cut(s) 71, 103, 225, 257
FatI CATG 6 cut(s) 136, 253, 441, 461, 542, 549
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 167
GlaI GCGC 1 cut(s) 266
GluI GCNGC 1 cut(s) 167
HaeII RGCGCY 1 cut(s) 268
HhaI GCGC 1 cut(s) 267
Hin1II CATG 6 cut(s) 140, 257, 445, 465, 546, 553
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HinfI GANTC 6 cut(s) 40, 223, 306, 431, 458, 581
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 4 cut(s) 305, 436, 492, 602
Hpy188III TCNNGA 1 cut(s) 479
Hpy8I GTNNAC 1 cut(s) 34
HpyCH4V TGCA 4 cut(s) 22, 48, 121, 514
HpyF3I CTNAG 2 cut(s) 188, 583
Hsp92II CATG 6 cut(s) 140, 257, 445, 465, 546, 553
HspAI GCGC 1 cut(s) 265
Kzo9I GATC 2 cut(s) 13, 271
LmnI GCTCC 1 cut(s) 337
LpnPI CCDG 7 cut(s) 14, 140, 182, 206, 320, 339, 492
Lsp1109I GCAGC 1 cut(s) 178
MalI GATC 2 cut(s) 15, 273
MboI GATC 2 cut(s) 13, 271
MboII GAAGA 5 cut(s) 16, 188, 245, 248, 481
MfeI CAATTG 2 cut(s) 227, 386
MflI RGATCY 1 cut(s) 13
MluCI AATT 9 cut(s) 70, 75, 116, 227, 371, 386, 411, 473, 503
MlyI GAGTC 3 cut(s) 217, 315, 575
MmeI TCCRAC 2 cut(s) 273, 537
MnlI CCTC 4 cut(s) 193, 459, 486, 546
MseI TTAA 4 cut(s) 78, 318, 345, 485
MunI CAATTG 2 cut(s) 227, 386
Mva1269I GAATGC 1 cut(s) 89
NdeII GATC 2 cut(s) 13, 271
NlaIII CATG 6 cut(s) 140, 257, 445, 465, 546, 553
PctI GAATGC 1 cut(s) 89
PfeI GAWTC 3 cut(s) 40, 431, 458
PkrI GCNGC 1 cut(s) 168
PleI GAGTC 3 cut(s) 217, 314, 575
PpsI GAGTC 3 cut(s) 217, 314, 575
PsuI RGATCY 1 cut(s) 13
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
SaqAI TTAA 4 cut(s) 78, 318, 345, 485
SatI GCNGC 1 cut(s) 167
Sau3AI GATC 2 cut(s) 13, 271
SchI GAGTC 3 cut(s) 217, 315, 575
SetI ASST 5 cut(s) 62, 171, 351, 529, 557
SfcI CTRYAG 1 cut(s) 528
Sse9I AATT 9 cut(s) 70, 75, 116, 227, 371, 386, 411, 473, 503
TaqI TCGA 1 cut(s) 270
TasI AATT 9 cut(s) 70, 75, 116, 227, 371, 386, 411, 473, 503
TfiI GAWTC 3 cut(s) 40, 431, 458
Tru1I TTAA 4 cut(s) 78, 318, 345, 485
Tru9I TTAA 4 cut(s) 78, 318, 345, 485
TscAI CASTG 1 cut(s) 55
TseI GCWGC 1 cut(s) 166
TspDTI ATGAA 9 cut(s) 17, 119, 197, 204, 293, 384, 450, 458, 549
TspRI CASTG 1 cut(s) 55
XapI RAATTY 2 cut(s) 70, 473
XcmI CCANNNNNNNNNTGG 2 cut(s) 134, 392
XmiI GTMKAC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.