Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001531

Physical Location & Seq

Genomic Coordinates Reverse (-)

65888301 .. 65889695

Gene Structure 1395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG503800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGAGAAAGTGGATCCTAAATTAGAAGTCAAAATCAAAGAGGCTAAGAAGCTGATTGCAAAGATGGCTCAAGATAATCTTCAGTTCACTTATACATTAGAAGAAAAGATATTTGATGAGTTCTCTTTGGAGTCGTGGTTGCGATACCTGAATGCCCAGAAAGACCGTCTCAAATATTTATTGATCAAGGAGATGAAGAAAATGGATCTATTGCAAATACTGGTAGACAAGATTCGTTGCACTGACAACACCTACCAAAAAAATTCAATTAAGGAATGCTTGTCAGCACAAGAAATGAATAATCATAAATTGCATTGCCAGATGGTACATGGAAGCAAGAGTTTGAGAAAGGAAAAGCAGCTTTTGGAAGATATGAAACTGAGCCAGCAGGAGGATAAGTTTGTTTCATTTTGGACTCAATTGGAAGAACAACTTGGTGTTTATCATGCTGATTGGCGCTTCGATCCAATGAAACAGATTTTGTTGTTGCATCACCAGATGCCAGTTTTGATCATTACAGGAGATGCAGTTAAAGAACGCATACTAGAATTCAGAGATCTTGAATGGAGAATACAAACCTTACAGGAGCAAGTTAAGGTTGCTGGTAAGAAAATAGATGAATTGAGAAAAACCCAATTGGCTCTTGGTCTTGAGAAAATAATTAGTCAAGTTGACAGAGAATCGGAAGCCATGAAAAGGGCTATAGATTCATGGAGGAAGAAATTTCCAGAGTTAAATCAGAGGAAAGATAAATTATATTTGCACTTTTTGAAACCCATAGATGAACAGCCATGTTCCATGAGGTACAAGTCACAACATTACATTAGAACACAACTCATCACAGAACAATTTCATTACAATAATCCAACTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

35.0

Weight (kDa)

8.99

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11970
fragaria_vesca	FvH4_2g31530 FvH4_2g31540 FvH4_2g31541 FvH4_2g31550 FvH4_2g31590 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591
malus_domestica	MD08G1065000.v1.1 MD08G1065100.v1.1 MD08G1065200.v1.1 MD15G1056600.v1.1
prunus_persica	Prupe.1G409100_v2.0.a1 Prupe.1G409200_v2.0.a1
pyrus_communis	pycom08g05380 pycom08g05390 pycom15g05300
rosa_chinensis	RchiOBHm_Chr6g0311231
rosa_laevigata	RLG00000010424 RLG00000010425
rosa_multiflora	Rmu_sc0012046.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157850 Rroxscaffold_7G00157860 Rroxscaffold_7G00157870 Rroxscaffold_7G00157880
rosa_rugosa	Rorug06G0386700.1 Rorug06G0386800 Rorug06G0386800
rosa_samantha	Rh6AG500900 Rh6AG501000 Rh6AG501100 Rh6AG501200 Rh6BG511400 Rh6BG511500 Rh6BG511600 Rh6BG511700 Rh6BG511800 Rh6CG517200 Rh6CG517300 Rh6CG517400 Rh6CG517500 Rh6CG517700 Rh6DG503700 Rh6DG503800
rosa_wichuraiana	Rw6G043610 Rw6G043640 Rw6G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	225
AclWI	GGATC	4 cut(s)	8, 21, 213, 458
AcsI	RAATTY	3 cut(s)	262, 548, 722
AcuI	CTGAAG	1 cut(s)	65
AfaI	GTAC	2 cut(s)	327, 806
AfiI	CCNNNNNNNGG	2 cut(s)	391, 696
AgsI	TTSAA	3 cut(s)	267, 563, 772
AjuI	GAANNNNNNNTTGG	2 cut(s)	417, 449
AluBI	AGCT	2 cut(s)	52, 361
AluI	AGCT	2 cut(s)	52, 361
Alw26I	GTCTC	1 cut(s)	173
AlwI	GGATC	4 cut(s)	8, 21, 213, 458
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	3 cut(s)	262, 548, 722
Asp700I	GAANNNNTTC	1 cut(s)	849
AspLEI	GCGC	1 cut(s)	459
AsuHPI	GGTGA	1 cut(s)	485
BamHI	GGATCC	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	370
BccI	CCATC	2 cut(s)	58, 316
BclI	TGATCA	2 cut(s)	183, 510
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	1 cut(s)	702
BfoI	RGCGCY	1 cut(s)	460
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	360
BmiI	GGNNCC	1 cut(s)	15
BmsI	GCATC	3 cut(s)	489, 499, 514
BpuEI	CTTGAG	2 cut(s)	54, 671
BsaXI	ACNNNNNCTCC	6 cut(s)	122, 152, 383, 413, 513, 543
Bsc4I	CCNNNNNNNGG	2 cut(s)	391, 696
Bse1I	ACTGG	2 cut(s)	225, 503
Bse3DI	GCAATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	2 cut(s)	391, 696
BseMI	GCAATG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	2 cut(s)	225, 503
BseXI	GCAGC	1 cut(s)	370
BslI	CCNNNNNNNGG	2 cut(s)	391, 696
BsmAI	GTCTC	1 cut(s)	173
BsmBI	CGTCTC	1 cut(s)	173
BsmI	GAATGC	2 cut(s)	157, 281
Bsp143I	GATC	6 cut(s)	13, 183, 205, 463, 510, 556
BspCNI	CTCAG	1 cut(s)	372
BspLI	GGNNCC	1 cut(s)	15
BspPI	GGATC	4 cut(s)	8, 21, 213, 458
BsrDI	GCAATG	1 cut(s)	313
BsrI	ACTGG	2 cut(s)	225, 503
BssMI	GATC	6 cut(s)	13, 183, 205, 463, 510, 556
Bst4CI	ACNGT	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	386
BstDEI	CTNAG	2 cut(s)	45, 380
BstH2I	RGCGCY	1 cut(s)	460
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	6 cut(s)	16, 186, 208, 466, 513, 559
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	6 cut(s)	13, 183, 205, 463, 510, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	702
BstV1I	GCAGC	1 cut(s)	370
BstX2I	RGATCY	3 cut(s)	13, 205, 556
BstYI	RGATCY	3 cut(s)	13, 205, 556
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	386
CfoI	GCGC	1 cut(s)	459
Csp6I	GTAC	2 cut(s)	326, 805
CviAII	CATG	6 cut(s)	329, 446, 691, 711, 792, 799
CviJI	RGCY	9 cut(s)	44, 52, 68, 361, 384, 641, 689, 701, 790
CviKI_1	RGCY	9 cut(s)	44, 52, 68, 361, 384, 641, 689, 701, 790
CviQI	GTAC	2 cut(s)	326, 805
DdeI	CTNAG	2 cut(s)	45, 380
DpnI	GATC	6 cut(s)	15, 185, 207, 465, 512, 558
DpnII	GATC	6 cut(s)	13, 183, 205, 463, 510, 556
Eco57I	CTGAAG	1 cut(s)	65
EcoRI	GAATTC	1 cut(s)	548
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	6 cut(s)	332, 449, 694, 714, 795, 802
FalI	AAGNNNNNCTT	6 cut(s)	63, 95, 263, 295, 417, 449
FatI	CATG	6 cut(s)	328, 445, 690, 710, 791, 798
FbaI	TGATCA	2 cut(s)	183, 510
FblI	GTMKAC	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	359
Fsp4HI	GCNGC	1 cut(s)	359
FspBI	CTAG	1 cut(s)	545
GlaI	GCGC	1 cut(s)	458
GluI	GCNGC	1 cut(s)	359
HaeII	RGCGCY	1 cut(s)	460
HhaI	GCGC	1 cut(s)	459
Hin1II	CATG	6 cut(s)	332, 449, 694, 714, 795, 802
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HinfI	GANTC	5 cut(s)	131, 232, 415, 680, 707
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	3 cut(s)	87, 226, 673
Hpy188I	TCNGA	3 cut(s)	554, 685, 741
Hpy188III	TCNNGA	4 cut(s)	71, 560, 650, 728
Hpy8I	GTNNAC	3 cut(s)	87, 226, 673
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	7 cut(s)	59, 214, 240, 313, 490, 527, 763
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	2 cut(s)	45, 380
Hsp92II	CATG	6 cut(s)	332, 449, 694, 714, 795, 802
HspAI	GCGC	1 cut(s)	457
Ksp22I	TGATCA	2 cut(s)	183, 510
Kzo9I	GATC	6 cut(s)	13, 183, 205, 463, 510, 556
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	3 cut(s)	489, 499, 514
MaeI	CTAG	1 cut(s)	545
MaeIII	GTNAC	1 cut(s)	810
MalI	GATC	6 cut(s)	15, 185, 207, 465, 512, 558
MboI	GATC	6 cut(s)	13, 183, 205, 463, 510, 556
MboII	GAAGA	6 cut(s)	71, 113, 208, 380, 437, 730
MfeI	CAATTG	2 cut(s)	419, 635
MflI	RGATCY	3 cut(s)	13, 205, 556
MlyI	GAGTC	2 cut(s)	140, 409
MnlI	CCTC	5 cut(s)	34, 385, 708, 735, 795
MroXI	GAANNNNTTC	1 cut(s)	849
MseI	TTAA	5 cut(s)	270, 531, 594, 734, 874
MunI	CAATTG	2 cut(s)	419, 635
Mva1269I	GAATGC	2 cut(s)	157, 281
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	6 cut(s)	13, 183, 205, 463, 510, 556
NlaIII	CATG	6 cut(s)	332, 449, 694, 714, 795, 802
NlaIV	GGNNCC	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	810
PctI	GAATGC	2 cut(s)	157, 281
PdmI	GAANNNNTTC	1 cut(s)	849
PfeI	GAWTC	3 cut(s)	232, 680, 707
PkrI	GCNGC	1 cut(s)	360
PleI	GAGTC	2 cut(s)	139, 409
PpsI	GAGTC	2 cut(s)	139, 409
PspN4I	GGNNCC	1 cut(s)	15
PsuI	RGATCY	3 cut(s)	13, 205, 556
RsaI	GTAC	2 cut(s)	327, 806
RsaNI	GTAC	2 cut(s)	326, 805
SaqAI	TTAA	5 cut(s)	270, 531, 594, 734, 874
SatI	GCNGC	1 cut(s)	359
Sau3AI	GATC	6 cut(s)	13, 183, 205, 463, 510, 556
SchI	GAGTC	2 cut(s)	140, 409
SetI	ASST	7 cut(s)	54, 150, 254, 363, 581, 600, 806
SfaNI	GCATC	3 cut(s)	489, 499, 514
SfcI	CTRYAG	1 cut(s)	702
SmlI	CTYRAG	2 cut(s)	69, 650
SmoI	CTYRAG	2 cut(s)	69, 650
SspI	AATATT	1 cut(s)	176
SspMI	CTAG	1 cut(s)	545
TaaI	ACNGT	1 cut(s)	167
TaqI	TCGA	1 cut(s)	462
TfiI	GAWTC	3 cut(s)	232, 680, 707
Tru1I	TTAA	5 cut(s)	270, 531, 594, 734, 874
Tru9I	TTAA	5 cut(s)	270, 531, 594, 734, 874
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	810
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	810
TspRI	CASTG	1 cut(s)	247
XapI	RAATTY	3 cut(s)	262, 548, 722
XcmI	CCANNNNNNNNNTGG	2 cut(s)	326, 641
XmiI	GTMKAC	1 cut(s)	225
XmnI	GAANNNNTTC	1 cut(s)	849
XspI	CTAG	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.