RLG00000010425

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0001531
Physical Location & Seq
Forward (+)
1565270 .. 1566602
1333 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010425

Sequence Viewer

Length: 918 bp
ATGGAAGCCTTATTAAAACCCAGAATTGAAGAGGCCATGAAGCTGCTTACTGCAAAAAAGGGTAAAGATGAACGTTGGTTCACTGCTTCATTAGATCAAAAGATGTTATGTAAGCGCCATTTGCTATCTGTTATTGGGCGTAAAGAGGAACTCGTAGATTCTCTGATTCTTGAAAGGAAGAAAATGGATCCACTGCAACTACTTGTACAAAAGCTTCGTTTCGCAGACAATGCTTACCAAAAGAAACCAATCAAGGCATGCTTGTCAGCCCAAGAGATGAGGAAACATAACTTGCATTTCCGGATGGTATATGGAAGCAAGAGTTTGGCCAAGGAAAAACAGCTTCTGAAAGAGATCAATGGGAGCAAGAAGCAAGATGGGGAAGAGGATAGTTTTGATTCATTTTGGAATCAGTGGGAAGAAGATCTTGCATTTGTTTGTGATAATACTGGGAACTATATAAGGTACCATAAGTGGTGGTGGCATATTGATCGGCATGAACAAATTTGGTGGTTGCAACACCAGATGCCATTTGTGATCAGTAAGGGAGATACAAAAGATCGCGAAGGAGAAATCAGAGAGCTCCTATGCAGAATAGAAAGCTGTGGAGTTGTATTGCTAAAGAAAGCAGATAAAACACCAATTGCTAATAACATAACTGGAAATGCTAGTCCTACTCTTGTGAAGGGAAAGACTAGGACTTCTTTGGGTTCAAAAAAAGCCTTACAGGAGCAAATTAAGCTCGCTGGTAAGAAAATAGAGGAATCAAGGAAAACCCTATTGGCTCTTGGGCCAAAACGTGGTCAAGCTCAGAGATACCTGGTGGGTATGGAAAAAGATATAGAATTACTGAGGAAGAAATTGCCAGGACCGTTAGAAAAAGTAAAATGGACAAATCATCAGTTACCTAAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

35.52

Weight (kDa)

9.66

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 465
AccB1I GGYRCC 1 cut(s) 465
AccB7I CCANNNNNTGG 1 cut(s) 800
AccII CGCG 1 cut(s) 564
AccIII TCCGGA 1 cut(s) 300
AclI AACGTT 1 cut(s) 73
AclWI GGATC 2 cut(s) 182, 195
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 1 cut(s) 504
AfaI GTAC 2 cut(s) 207, 467
AfiI CCNNNNNNNGG 1 cut(s) 800
AgsI TTSAA 3 cut(s) 29, 173, 714
AjnI CCWGG 2 cut(s) 819, 865
AjuI GAANNNNNNNTTGG 2 cut(s) 764, 796
AluBI AGCT 7 cut(s) 43, 214, 343, 583, 603, 742, 809
AluI AGCT 7 cut(s) 43, 214, 343, 583, 603, 742, 809
Alw21I GWGCWC 1 cut(s) 585
AlwI GGATC 2 cut(s) 182, 195
AlwNI CAGNNNCTG 1 cut(s) 346
Aor13HI TCCGGA 1 cut(s) 300
AoxI GGCC 3 cut(s) 33, 327, 791
ApeKI GCWGC 1 cut(s) 43
ApoI RAATTY 1 cut(s) 504
Asp718I GGTACC 1 cut(s) 465
AspLEI GCGC 1 cut(s) 117
AspS9I GGNCC 2 cut(s) 791, 869
AvaII GGWCC 1 cut(s) 869
BalI TGGCCA 1 cut(s) 329
BamHI GGATCC 1 cut(s) 187
BanI GGYRCC 1 cut(s) 465
BanII GRGCYC 1 cut(s) 585
BarI GAAGNNNNNNTAC 2 cut(s) 198, 230
Bbv12I GWGCWC 1 cut(s) 585
BbvI GCAGC 1 cut(s) 30
BccI CCATC 2 cut(s) 298, 371
BcgI CGANNNNNNTGC 2 cut(s) 473, 507
BciT130I CCWGG 2 cut(s) 821, 867
BclI TGATCA 1 cut(s) 537
BfaI CTAG 2 cut(s) 669, 696
BfoI RGCGCY 1 cut(s) 118
BglII AGATCT 1 cut(s) 424
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
Bme1390I CCNGG 2 cut(s) 821, 867
Bme18I GGWCC 1 cut(s) 869
BmgT120I GGNCC 2 cut(s) 791, 869
BmiI GGNNCC 2 cut(s) 189, 467
BmrFI CCNGG 2 cut(s) 821, 867
BmrI ACTGGG 1 cut(s) 459
BmsI GCATC 1 cut(s) 516
BmuI ACTGGG 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 330
BsaWI WCCGGW 1 cut(s) 300
Bsc4I CCNNNNNNNGG 1 cut(s) 800
Bse1I ACTGG 2 cut(s) 454, 664
BseAI TCCGGA 1 cut(s) 300
BseBI CCWGG 2 cut(s) 821, 867
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 800
BseMII CTCAG 2 cut(s) 824, 842
BseNI ACTGG 2 cut(s) 454, 664
BseXI GCAGC 1 cut(s) 30
Bsh1236I CGCG 1 cut(s) 564
BshFI GGCC 3 cut(s) 35, 329, 793
BshNI GGYRCC 1 cut(s) 465
BsiHKAI GWGCWC 1 cut(s) 585
BsiSI CCGG 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 800
BsnI GGCC 3 cut(s) 35, 329, 793
Bsp1286I GDGCHC 1 cut(s) 585
Bsp13I TCCGGA 1 cut(s) 300
Bsp1407I TGTACA 1 cut(s) 205
Bsp143I GATC 7 cut(s) 94, 187, 354, 424, 490, 537, 559
Bsp68I TCGCGA 1 cut(s) 564
BspANI GGCC 3 cut(s) 35, 329, 793
BspCNI CTCAG 2 cut(s) 823, 843
BspEI TCCGGA 1 cut(s) 300
BspFNI CGCG 1 cut(s) 564
BspLI GGNNCC 2 cut(s) 189, 467
BspPI GGATC 2 cut(s) 182, 195
BspT107I GGYRCC 1 cut(s) 465
BsrGI TGTACA 1 cut(s) 205
BsrI ACTGG 2 cut(s) 454, 664
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 7 cut(s) 94, 187, 354, 424, 490, 537, 559
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 2 cut(s) 821, 867
Bst4CI ACNGT 1 cut(s) 873
Bst6I CTCTTC 2 cut(s) 24, 378
BstAPI GCANNNNNTGC 1 cut(s) 230
BstAUI TGTACA 1 cut(s) 205
BstC8I GCNNGC 2 cut(s) 259, 744
BstDEI CTNAG 2 cut(s) 810, 851
BstF5I GGATG 1 cut(s) 309
BstFNI CGCG 1 cut(s) 564
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 7 cut(s) 97, 190, 357, 427, 493, 540, 562
BstMBI GATC 7 cut(s) 94, 187, 354, 424, 490, 537, 559
BstMWI GCNNNNNNNGC 3 cut(s) 121, 230, 739
BstNI CCWGG 2 cut(s) 821, 867
BstNSI RCATGY 1 cut(s) 261
BstSCI CCNGG 2 cut(s) 819, 865
BstUI CGCG 1 cut(s) 564
BstV1I GCAGC 1 cut(s) 30
BstX2I RGATCY 2 cut(s) 187, 424
BstYI RGATCY 2 cut(s) 187, 424
BsuRI GGCC 3 cut(s) 35, 329, 793
BtsCI GGATG 1 cut(s) 309
BtsI GCAGTG 2 cut(s) 81, 191
BtsIMutI CAGTG 3 cut(s) 81, 191, 419
BtuMI TCGCGA 1 cut(s) 564
Cac8I GCNNGC 2 cut(s) 259, 744
CaiI CAGNNNCTG 1 cut(s) 346
CfoI GCGC 1 cut(s) 117
Cfr13I GGNCC 2 cut(s) 791, 869
CsiI ACCWGGT 1 cut(s) 819
Csp6I GTAC 2 cut(s) 206, 466
CspCI CAANNNNNGTGG 2 cut(s) 491, 526
CviAII CATG 3 cut(s) 37, 258, 497
CviQI GTAC 2 cut(s) 206, 466
DdeI CTNAG 2 cut(s) 810, 851
DpnI GATC 7 cut(s) 96, 189, 356, 426, 492, 539, 561
DpnII GATC 7 cut(s) 94, 187, 354, 424, 490, 537, 559
EaeI YGGCCR 1 cut(s) 327
Eam1104I CTCTTC 2 cut(s) 24, 378
EarI CTCTTC 2 cut(s) 24, 378
Ecl136II GAGCTC 1 cut(s) 583
Eco130I CCWWGG 1 cut(s) 330
Eco24I GRGCYC 1 cut(s) 585
Eco47I GGWCC 1 cut(s) 869
Eco53kI GAGCTC 1 cut(s) 583
EcoICRI GAGCTC 1 cut(s) 583
EcoRII CCWGG 2 cut(s) 819, 865
EcoT14I CCWWGG 1 cut(s) 330
EcoT38I GRGCYC 1 cut(s) 585
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 3 cut(s) 40, 261, 500
FalI AAGNNNNNCTT 4 cut(s) 245, 277, 411, 443
FatI CATG 3 cut(s) 36, 257, 496
FbaI TGATCA 1 cut(s) 537
Fnu4HI GCNGC 1 cut(s) 44
FokI GGATG 1 cut(s) 316
FriOI GRGCYC 1 cut(s) 585
Fsp4HI GCNGC 1 cut(s) 44
FspBI CTAG 2 cut(s) 669, 696
GlaI GCGC 1 cut(s) 116
GluI GCNGC 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 118
HaeIII GGCC 3 cut(s) 35, 329, 793
HapII CCGG 1 cut(s) 301
HhaI GCGC 1 cut(s) 117
Hin1II CATG 3 cut(s) 40, 261, 500
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 5 cut(s) 158, 166, 398, 409, 764
HpaII CCGG 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 4 cut(s) 165, 348, 578, 813
Hpy188III TCNNGA 3 cut(s) 170, 301, 563
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 2 cut(s) 560, 679
HpyCH4III ACNGT 1 cut(s) 873
HpyCH4IV ACGT 2 cut(s) 73, 799
HpyCH4V TGCA 6 cut(s) 53, 196, 295, 431, 517, 591
HpyF10VI GCNNNNNNNGC 3 cut(s) 121, 230, 739
HpyF3I CTNAG 2 cut(s) 810, 851
HpySE526I ACGT 2 cut(s) 73, 799
Hsp92II CATG 3 cut(s) 40, 261, 500
HspAI GCGC 1 cut(s) 115
Kpn2I TCCGGA 1 cut(s) 300
KpnI GGTACC 1 cut(s) 469
Ksp22I TGATCA 1 cut(s) 537
Kzo9I GATC 7 cut(s) 94, 187, 354, 424, 490, 537, 559
LmnI GCTCC 3 cut(s) 363, 588, 730
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 1 cut(s) 516
MabI ACCWGGT 1 cut(s) 819
MaeI CTAG 2 cut(s) 669, 696
MaeII ACGT 2 cut(s) 73, 799
MaeIII GTNAC 1 cut(s) 903
MalI GATC 7 cut(s) 96, 189, 356, 426, 492, 539, 561
MboI GATC 7 cut(s) 94, 187, 354, 424, 490, 537, 559
MboII GAAGA 6 cut(s) 41, 190, 395, 431, 434, 868
MfeI CAATTG 1 cut(s) 642
MflI RGATCY 2 cut(s) 187, 424
MhlI GDGCHC 1 cut(s) 585
MlsI TGGCCA 1 cut(s) 329
MluCI AATT 6 cut(s) 24, 504, 642, 735, 845, 860
MluNI TGGCCA 1 cut(s) 329
MnlI CCTC 6 cut(s) 25, 139, 273, 379, 754, 846
Mox20I TGGCCA 1 cut(s) 329
MroI TCCGGA 1 cut(s) 300
MscI TGGCCA 1 cut(s) 329
MseI TTAA 3 cut(s) 14, 738, 916
Msp20I TGGCCA 1 cut(s) 329
MspI CCGG 1 cut(s) 301
MspR9I CCNGG 2 cut(s) 821, 867
MunI CAATTG 1 cut(s) 642
MvaI CCWGG 2 cut(s) 821, 867
MvnI CGCG 1 cut(s) 564
MwoI GCNNNNNNNGC 3 cut(s) 121, 230, 739
NdeII GATC 7 cut(s) 94, 187, 354, 424, 490, 537, 559
NlaIII CATG 3 cut(s) 40, 261, 500
NlaIV GGNNCC 2 cut(s) 189, 467
NruI TCGCGA 1 cut(s) 564
NspI RCATGY 1 cut(s) 261
PaeI GCATGC 1 cut(s) 261
PfeI GAWTC 5 cut(s) 158, 166, 398, 409, 764
PflMI CCANNNNNTGG 1 cut(s) 800
PkrI GCNGC 1 cut(s) 45
Psp124BI GAGCTC 1 cut(s) 585
Psp1406I AACGTT 1 cut(s) 73
Psp6I CCWGG 2 cut(s) 819, 865
PspGI CCWGG 2 cut(s) 819, 865
PspN4I GGNNCC 2 cut(s) 189, 467
PspPI GGNCC 2 cut(s) 791, 869
PstNI CAGNNNCTG 1 cut(s) 346
PsuI RGATCY 2 cut(s) 187, 424
RruI TCGCGA 1 cut(s) 564
RsaI GTAC 2 cut(s) 207, 467
RsaNI GTAC 2 cut(s) 206, 466
SacI GAGCTC 1 cut(s) 585
SaqAI TTAA 3 cut(s) 14, 738, 916
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 7 cut(s) 94, 187, 354, 424, 490, 537, 559
Sau96I GGNCC 2 cut(s) 791, 869
ScrFI CCNGG 2 cut(s) 821, 867
SduI GDGCHC 1 cut(s) 585
SexAI ACCWGGT 1 cut(s) 819
SfaNI GCATC 1 cut(s) 516
SinI GGWCC 1 cut(s) 869
SphI GCATGC 1 cut(s) 261
Sse9I AATT 6 cut(s) 24, 504, 642, 735, 845, 860
SspMI CTAG 2 cut(s) 669, 696
SstI GAGCTC 1 cut(s) 585
StyD4I CCNGG 2 cut(s) 819, 865
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 873
TaiI ACGT 2 cut(s) 76, 802
TasI AATT 6 cut(s) 24, 504, 642, 735, 845, 860
TatI WGTACW 1 cut(s) 205
TfiI GAWTC 5 cut(s) 158, 166, 398, 409, 764
Tru1I TTAA 3 cut(s) 14, 738, 916
Tru9I TTAA 3 cut(s) 14, 738, 916
TscAI CASTG 3 cut(s) 88, 198, 419
TseI GCWGC 1 cut(s) 43
TspDTI ATGAA 5 cut(s) 53, 78, 84, 390, 513
TspRI CASTG 3 cut(s) 88, 198, 419
Van91I CCANNNNNTGG 1 cut(s) 800
VpaK11BI GGWCC 1 cut(s) 869
XapI RAATTY 1 cut(s) 504
XceI RCATGY 1 cut(s) 261
XspI CTAG 2 cut(s) 669, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.