Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001531

Physical Location & Seq

Genomic Coordinates Reverse (-)

5175215 .. 5176891

Gene Structure 1677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1065100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTTAATTTGTGACGCTGATCCATTCGGGTGCAAGTCGAACTTAAAGACCTGTGTTTCATCTTGTGATTTGCTTATTCCTTTGTTTCACATCAGGCAACGCATAATGGAGGAATTGGAAGCTAAACGAGACAACAATAGCTTGCAAGAGGACTTACACGATAACTGGAATTGGGGTTCGGAAGTTGATGCTGCTGCTGATGAAAAGACAGATTTAAAAGGCAGAATTCACGAGGTTGAGAAGCTGGCTGAAAAGATCAGTCAAGACAGACTTGAGCTGAATGAAGATATAGTGAAAAGGACGTGTGATAGGGCATGCACCCTTTCTCGGTTGGAATCCCTGAAAGATAGTGAAATGGAACTCGGATCCCTTTTGTCCGCGGTGAGGGAGAAAATGAATATACTGCAACTATTTCTGCTCCATTTTGCAGAAAAAGCTTACCAAGGAAAGCCTATGAAGCCCTTCTTACCAGCAGAAGAGATAGCTAAACATGTAACGGCTACATGTTTTAAAATGAATTTCCGGATGGGACATGGAACAAACAGTTTGGTGGAGGAAAAACAGCTTTTGAAACAGATGAATGTGAGACCGAAAGAGGGTGTTGATTCATTTTCATCATTGGAAGGGCATTGTTATACTCCGCCTTATGTAGATGTAAGTGGTCAGAAGGTTGATGAAGTAACGAAATCACTATTGGCTGTGCGGGCAAAAATTAAGAAAGTTGAGAGAGAATTGAAGGCCATTGAAAGAGATACAGAATGCTTGAAGAAAAAATTGACGCTGATAAATCATAGGAAAGATGAGGCGTTGCCTGCCTTCGGCAACCAAGAAATTAACAGAGATATCGGCTTAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

286

Amino Acids

32.45

Weight (kDa)

6.12

Isoelectric Point (pI)

38.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11970
fragaria_vesca	FvH4_2g31530 FvH4_2g31540 FvH4_2g31541 FvH4_2g31550 FvH4_2g31590 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591
malus_domestica	MD08G1065000.v1.1 MD08G1065100.v1.1 MD08G1065200.v1.1 MD15G1056600.v1.1
prunus_persica	Prupe.1G409100_v2.0.a1 Prupe.1G409200_v2.0.a1
pyrus_communis	pycom08g05380 pycom08g05390 pycom15g05300
rosa_chinensis	RchiOBHm_Chr6g0311231
rosa_laevigata	RLG00000010424 RLG00000010425
rosa_multiflora	Rmu_sc0012046.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157850 Rroxscaffold_7G00157860 Rroxscaffold_7G00157870 Rroxscaffold_7G00157880
rosa_rugosa	Rorug06G0386700.1 Rorug06G0386800 Rorug06G0386800
rosa_samantha	Rh6AG500900 Rh6AG501000 Rh6AG501100 Rh6AG501200 Rh6BG511400 Rh6BG511500 Rh6BG511600 Rh6BG511700 Rh6BG511800 Rh6CG517200 Rh6CG517300 Rh6CG517400 Rh6CG517500 Rh6CG517700 Rh6DG503700 Rh6DG503800
rosa_wichuraiana	Rw6G043610 Rw6G043640 Rw6G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	380
AccIII	TCCGGA	1 cut(s)	522
AciI	CCGC	4 cut(s)	378, 380, 641, 703
AclWI	GGATC	3 cut(s)	14, 360, 373
AcsI	RAATTY	2 cut(s)	225, 517
AfiI	CCNNNNNNNGG	4 cut(s)	327, 384, 596, 818
AflIII	ACRYGT	3 cut(s)	302, 490, 503
AgsI	TTSAA	4 cut(s)	571, 736, 746, 766
AjiI	CACGTC	1 cut(s)	303
AjuI	GAANNNNNNNTTGG	2 cut(s)	677, 709
AloI	GAACNNNNNNTCC	2 cut(s)	160, 192
AluBI	AGCT	7 cut(s)	122, 141, 244, 277, 437, 485, 565
AluI	AGCT	7 cut(s)	122, 141, 244, 277, 437, 485, 565
Alw26I	GTCTC	2 cut(s)	123, 580
AlwI	GGATC	3 cut(s)	14, 360, 373
Aor13HI	TCCGGA	1 cut(s)	522
AoxI	GGCC	1 cut(s)	738
ApeKI	GCWGC	2 cut(s)	191, 194
ApoI	RAATTY	2 cut(s)	225, 517
Asp700I	GAANNNNTTC	1 cut(s)	461
AsuHPI	GGTGA	1 cut(s)	394
BamHI	GGATCC	1 cut(s)	365
BauI	CACGAG	1 cut(s)	230
BbvI	GCAGC	2 cut(s)	178, 181
BccI	CCATC	1 cut(s)	520
BceAI	ACGGC	1 cut(s)	513
BcoDI	GTCTC	2 cut(s)	123, 580
BisI	GCNGC	2 cut(s)	192, 195
BlsI	GCNGC	2 cut(s)	193, 196
BmgBI	CACGTC	1 cut(s)	303
BmiI	GGNNCC	1 cut(s)	367
BmsI	GCATC	1 cut(s)	178
Bpu10I	CCTNAGC	1 cut(s)	850
BpuEI	CTTGAG	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	580
BsaJI	CCNNGG	2 cut(s)	378, 442
BsaWI	WCCGGW	1 cut(s)	522
Bsc4I	CCNNNNNNNGG	4 cut(s)	327, 384, 596, 818
Bse1I	ACTGG	1 cut(s)	170
BseAI	TCCGGA	1 cut(s)	522
BseDI	CCNNGG	2 cut(s)	378, 442
BseGI	GGATG	1 cut(s)	531
BseLI	CCNNNNNNNGG	4 cut(s)	327, 384, 596, 818
BseNI	ACTGG	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	178, 181
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	1 cut(s)	740
BsiSI	CCGG	1 cut(s)	523
BslFI	GGGAC	1 cut(s)	543
BslI	CCNNNNNNNGG	4 cut(s)	327, 384, 596, 818
BsmAI	GTCTC	2 cut(s)	123, 580
BsmFI	GGGAC	1 cut(s)	543
BsmI	GAATGC	1 cut(s)	764
BsnI	GGCC	1 cut(s)	740
Bso31I	GGTCTC	1 cut(s)	580
Bsp13I	TCCGGA	1 cut(s)	522
Bsp143I	GATC	3 cut(s)	19, 255, 365
BspACI	CCGC	4 cut(s)	378, 380, 641, 703
BspANI	GGCC	1 cut(s)	740
BspEI	TCCGGA	1 cut(s)	522
BspFNI	CGCG	1 cut(s)	380
BspLI	GGNNCC	1 cut(s)	367
BspPI	GGATC	3 cut(s)	14, 360, 373
BspTNI	GGTCTC	1 cut(s)	580
BsrI	ACTGG	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	378, 442
BssMI	GATC	3 cut(s)	19, 255, 365
BssSI	CACGAG	1 cut(s)	230
BssT1I	CCWWGG	1 cut(s)	442
Bst2BI	CACGAG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	545
Bst6I	CTCTTC	1 cut(s)	471
BstC8I	GCNNGC	5 cut(s)	143, 246, 316, 705, 813
BstDEI	CTNAG	1 cut(s)	850
BstDSI	CCRYGG	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	531
BstFNI	CGCG	1 cut(s)	380
BstKTI	GATC	3 cut(s)	22, 258, 368
BstMAI	GTCTC	2 cut(s)	123, 580
BstMBI	GATC	3 cut(s)	19, 255, 365
BstMWI	GCNNNNNNNGC	4 cut(s)	434, 457, 704, 812
BstNSI	RCATGY	3 cut(s)	318, 494, 507
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	2 cut(s)	178, 181
BstX2I	RGATCY	1 cut(s)	365
BstYI	RGATCY	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	740
BtgI	CCRYGG	1 cut(s)	378
BtrI	CACGTC	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	531
Cac8I	GCNNGC	5 cut(s)	143, 246, 316, 705, 813
Cfr42I	CCGCGG	1 cut(s)	381
CseI	GACGC	2 cut(s)	23, 787
CviAII	CATG	4 cut(s)	315, 491, 504, 533
DdeI	CTNAG	1 cut(s)	850
DpnI	GATC	3 cut(s)	21, 257, 367
DpnII	GATC	3 cut(s)	19, 255, 365
DraI	TTTAAA	2 cut(s)	216, 511
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
EciI	GGCGGA	1 cut(s)	630
Eco130I	CCWWGG	1 cut(s)	442
Eco31I	GGTCTC	1 cut(s)	580
Eco32I	GATATC	1 cut(s)	844
EcoRI	GAATTC	1 cut(s)	225
EcoRV	GATATC	1 cut(s)	844
EcoT14I	CCWWGG	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	442
FaeI	CATG	4 cut(s)	318, 494, 507, 536
FalI	AAGNNNNNCTT	6 cut(s)	26, 58, 255, 287, 449, 481
FaqI	GGGAC	1 cut(s)	543
FatI	CATG	4 cut(s)	314, 490, 503, 532
FauI	CCCGC	1 cut(s)	696
Fnu4HI	GCNGC	2 cut(s)	192, 195
FokI	GGATG	1 cut(s)	538
Fsp4HI	GCNGC	2 cut(s)	192, 195
GluI	GCNGC	2 cut(s)	192, 195
HaeIII	GGCC	1 cut(s)	740
HapII	CCGG	1 cut(s)	523
HgaI	GACGC	2 cut(s)	23, 787
Hin1II	CATG	4 cut(s)	318, 494, 507, 536
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	2 cut(s)	335, 605
HpaII	CCGG	1 cut(s)	523
HphI	GGTGA	1 cut(s)	394
Hpy188I	TCNGA	3 cut(s)	181, 365, 666
Hpy188III	TCNNGA	3 cut(s)	230, 263, 523
HpyAV	CCTTC	5 cut(s)	472, 617, 661, 730, 826
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	5 cut(s)	33, 145, 318, 406, 428
HpyF10VI	GCNNNNNNNGC	4 cut(s)	434, 457, 704, 812
HpyF3I	CTNAG	1 cut(s)	850
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	4 cut(s)	318, 494, 507, 536
Kpn2I	TCCGGA	1 cut(s)	522
KspI	CCGCGG	1 cut(s)	381
Kzo9I	GATC	3 cut(s)	19, 255, 365
LmnI	GCTCC	1 cut(s)	423
LpnPI	CCDG	8 cut(s)	64, 79, 151, 230, 353, 483, 536, 825
Lsp1109I	GCAGC	2 cut(s)	178, 181
LweI	GCATC	1 cut(s)	178
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	3 cut(s)	11, 493, 679
MalI	GATC	3 cut(s)	21, 257, 367
MboI	GATC	3 cut(s)	19, 255, 365
MboII	GAAGA	3 cut(s)	296, 488, 778
MflI	RGATCY	1 cut(s)	365
MluCI	AATT	9 cut(s)	6, 113, 169, 225, 517, 711, 731, 773, 831
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	7 cut(s)	103, 142, 226, 378, 547, 589, 796
MroI	TCCGGA	1 cut(s)	522
MroXI	GAANNNNTTC	1 cut(s)	461
MseI	TTAA	7 cut(s)	5, 44, 215, 510, 714, 834, 856
MslI	CAYNNNNRTG	1 cut(s)	28
MspA1I	CMGCKG	1 cut(s)	380
MspI	CCGG	1 cut(s)	523
Mva1269I	GAATGC	1 cut(s)	764
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	4 cut(s)	434, 457, 704, 812
NdeII	GATC	3 cut(s)	19, 255, 365
NlaIII	CATG	4 cut(s)	318, 494, 507, 536
NlaIV	GGNNCC	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	11
NspI	RCATGY	3 cut(s)	318, 494, 507
PaeI	GCATGC	1 cut(s)	318
PciI	ACATGT	2 cut(s)	490, 503
PctI	GAATGC	1 cut(s)	764
PdmI	GAANNNNTTC	1 cut(s)	461
PfeI	GAWTC	2 cut(s)	335, 605
PkrI	GCNGC	2 cut(s)	193, 196
PscI	ACATGT	2 cut(s)	490, 503
PspN4I	GGNNCC	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	365
RseI	CAYNNNNRTG	1 cut(s)	28
SacII	CCGCGG	1 cut(s)	381
SaqAI	TTAA	7 cut(s)	5, 44, 215, 510, 714, 834, 856
SatI	GCNGC	2 cut(s)	192, 195
Sau3AI	GATC	3 cut(s)	19, 255, 365
SfaNI	GCATC	1 cut(s)	178
Sfr303I	CCGCGG	1 cut(s)	381
SgrBI	CCGCGG	1 cut(s)	381
SmiMI	CAYNNNNRTG	1 cut(s)	28
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SphI	GCATGC	1 cut(s)	318
Sse9I	AATT	9 cut(s)	6, 113, 169, 225, 517, 711, 731, 773, 831
SsiI	CCGC	4 cut(s)	378, 380, 641, 703
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	1 cut(s)	545
TaiI	ACGT	1 cut(s)	305
TaqI	TCGA	1 cut(s)	38
TaqII	GACCGA	1 cut(s)	604
TasI	AATT	9 cut(s)	6, 113, 169, 225, 517, 711, 731, 773, 831
TfiI	GAWTC	2 cut(s)	335, 605
Tru1I	TTAA	7 cut(s)	5, 44, 215, 510, 714, 834, 856
Tru9I	TTAA	7 cut(s)	5, 44, 215, 510, 714, 834, 856
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	2 cut(s)	191, 194
Tsp45I	GTSAC	1 cut(s)	11
XapI	RAATTY	2 cut(s)	225, 517
XceI	RCATGY	3 cut(s)	318, 494, 507
XmnI	GAANNNNTTC	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.