Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001531

Physical Location & Seq

Genomic Coordinates Forward (+)

24186647 .. 24188996

Gene Structure 2350 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31591.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGAGCTGGAATTGGAAACAAGTATAAAAGCCGAAATTGAAGAGGCTGAGAAATTGATTGCAATGATAGGTGGAGAAAAACTTCAGCTCACTGATTCACTAGGGCAGATGATGTTTGATCATCGATGTTTGCTGTCTCGGTTGGTAGACCTCAATTGTCGTAAAGAAGAACTCGTACATTCTGTGATTCATCAAAGGAGGAAGATGGATCTACTGCAACTACTTCCACATAAGCTTCGTTTCGCAGACAACACTTACCAAAAGAAACCGATCAAGTCATGCTTGTCTGCACAAGAGATGAGTAAACATAACTTGCATTTCCGGATGGAACATGGAAGCAAGAGTTTGGTTAAGGAAAAGAGGCTTCTGAAAGAGATGAAAGTGAGCCAGAATGAAGCGGAGGATGGTTTTGCTTCATTTTGGACTCAATGGGAAGACGATTTGACAAATGCGTCTGAAAATATTATCAGATACAGAAGGTATGGGAATGGGATAGTCCGCATTGATTTGCATTCTTTGAAACAGACTTGGTGGTTGCAACACCAGATGCCATTCCTAATCAGCAAAGGAGATATCAAAGACCGCGAAGGAGAAATCAGAGAACTCGAGTGGAGAATAGAAACATGTGGAGTAGGATTGCCACTATTGCAAAAGAAAGCAGATAAAACACTACTTGCTTTCAATAGAAGTGCAGATGCTAATCCTACTCCTGTGAAGGGAAAGACTTGGACTTGTTTGGTAACAAAAAATAAATTACAGGACCAAATAAAGCTTGCCAGTAAGAATATAGAGGAATCAAGGAAAACCCAGCTGGCTCTTGGTCTTGGGCTAAAACTCAGTGACGTTCAGAGAGAACTGGTGACTATTGAAAGGGATATGGAATCACTGAAGAAGAAAATGACATTGATAGATCAGAAGAAAGATGAAGCACACCAATACATTCTCAAACTCAGAAAACAACAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

323

Amino Acids

37.54

Weight (kDa)

9.16

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11970
fragaria_vesca	FvH4_2g31530 FvH4_2g31540 FvH4_2g31541 FvH4_2g31550 FvH4_2g31590 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591
malus_domestica	MD08G1065000.v1.1 MD08G1065100.v1.1 MD08G1065200.v1.1 MD15G1056600.v1.1
prunus_persica	Prupe.1G409100_v2.0.a1 Prupe.1G409200_v2.0.a1
pyrus_communis	pycom08g05380 pycom08g05390 pycom15g05300
rosa_chinensis	RchiOBHm_Chr6g0311231
rosa_laevigata	RLG00000010424 RLG00000010425
rosa_multiflora	Rmu_sc0012046.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157850 Rroxscaffold_7G00157860 Rroxscaffold_7G00157870 Rroxscaffold_7G00157880
rosa_rugosa	Rorug06G0386700.1 Rorug06G0386800 Rorug06G0386800
rosa_samantha	Rh6AG500900 Rh6AG501000 Rh6AG501100 Rh6AG501200 Rh6BG511400 Rh6BG511500 Rh6BG511600 Rh6BG511700 Rh6BG511800 Rh6CG517200 Rh6CG517300 Rh6CG517400 Rh6CG517500 Rh6CG517700 Rh6DG503700 Rh6DG503800
rosa_wichuraiana	Rw6G043610 Rw6G043640 Rw6G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	451
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	585
AccIII	TCCGGA	1 cut(s)	321
AciI	CCGC	3 cut(s)	398, 499, 583
AclWI	GGATC	1 cut(s)	216
AcuI	CTGAAG	2 cut(s)	68, 908
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	716
AflIII	ACRYGT	1 cut(s)	623
AgsI	TTSAA	4 cut(s)	41, 520, 682, 869
AluBI	AGCT	5 cut(s)	7, 88, 235, 772, 811
AluI	AGCT	5 cut(s)	7, 88, 235, 772, 811
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	605
Aor13HI	TCCGGA	1 cut(s)	321
Asp700I	GAANNNNTTC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	760
AsuHPI	GGTGA	1 cut(s)	871
AvaI	CYCGRG	1 cut(s)	605
AvaII	GGWCC	1 cut(s)	760
BarI	GAAGNNNNNNTAC	2 cut(s)	159, 191
BbsI	GAAGAC	1 cut(s)	441
BccI	CCATC	3 cut(s)	199, 319, 398
BclI	TGATCA	1 cut(s)	118
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	101
Bme18I	GGWCC	1 cut(s)	760
BmeT110I	CYCGRG	1 cut(s)	605
BmgT120I	GGNCC	1 cut(s)	760
BmsI	GCATC	2 cut(s)	537, 685
BpiI	GAAGAC	1 cut(s)	441
Bsa29I	ATCGAT	1 cut(s)	124
BsaBI	GATNNNNATC	1 cut(s)	699
BsaWI	WCCGGW	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	716
Bse1I	ACTGG	2 cut(s)	777, 861
Bse3DI	GCAATG	1 cut(s)	69
Bse8I	GATNNNNATC	1 cut(s)	699
BseAI	TCCGGA	1 cut(s)	321
BseCI	ATCGAT	1 cut(s)	124
BseGI	GGATG	2 cut(s)	330, 409
BseJI	GATNNNNATC	1 cut(s)	699
BseLI	CCNNNNNNNGG	1 cut(s)	716
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	3 cut(s)	39, 850, 964
BseNI	ACTGG	2 cut(s)	777, 861
BseYI	CCCAGC	1 cut(s)	807
BsgI	GTGCAG	2 cut(s)	273, 711
Bsh1236I	CGCG	1 cut(s)	585
BshVI	ATCGAT	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	605
BsiSI	CCGG	1 cut(s)	322
BslI	CCNNNNNNNGG	1 cut(s)	716
BsmAI	GTCTC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	511
BsoBI	CYCGRG	1 cut(s)	605
Bsp13I	TCCGGA	1 cut(s)	321
Bsp143I	GATC	4 cut(s)	118, 208, 270, 910
BspACI	CCGC	3 cut(s)	398, 499, 583
BspCNI	CTCAG	3 cut(s)	40, 849, 963
BspDI	ATCGAT	1 cut(s)	124
BspEI	TCCGGA	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	585
BspPI	GGATC	1 cut(s)	216
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	2 cut(s)	777, 861
BssMI	GATC	4 cut(s)	118, 208, 270, 910
Bst6I	CTCTTC	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	774, 813
BstDEI	CTNAG	3 cut(s)	48, 836, 950
BstF5I	GGATG	2 cut(s)	330, 409
BstFNI	CGCG	1 cut(s)	585
BstKTI	GATC	4 cut(s)	121, 211, 273, 913
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	4 cut(s)	118, 208, 270, 910
BstMWI	GCNNNNNNNGC	1 cut(s)	646
BstNSI	RCATGY	1 cut(s)	627
BstUI	CGCG	1 cut(s)	585
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	124
BsuTUI	ATCGAT	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	330, 409
BtsIMutI	CAGTG	3 cut(s)	90, 844, 884
Cac8I	GCNNGC	2 cut(s)	774, 813
Cfr13I	GGNCC	1 cut(s)	760
ClaI	ATCGAT	1 cut(s)	124
CseI	GACGC	1 cut(s)	441
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	4 cut(s)	279, 332, 624, 966
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	3 cut(s)	48, 836, 950
DpnI	GATC	4 cut(s)	120, 210, 272, 912
DpnII	GATC	4 cut(s)	118, 208, 270, 910
DrdI	GACNNNNNNGTC	1 cut(s)	451
DseDI	GACNNNNNNGTC	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco32I	GATATC	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	760
Eco57I	CTGAAG	2 cut(s)	68, 908
Eco88I	CYCGRG	1 cut(s)	605
EcoRV	GATATC	1 cut(s)	574
FaeI	CATG	4 cut(s)	282, 335, 627, 969
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	4 cut(s)	278, 331, 623, 965
FbaI	TGATCA	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	147
FokI	GGATG	2 cut(s)	337, 416
FspBI	CTAG	1 cut(s)	101
GsaI	CCCAGC	1 cut(s)	811
HapII	CCGG	1 cut(s)	322
HgaI	GACGC	1 cut(s)	441
Hin1II	CATG	4 cut(s)	282, 335, 627, 969
HindIII	AAGCTT	2 cut(s)	233, 770
HinfI	GANTC	5 cut(s)	95, 187, 424, 794, 881
HpaII	CCGG	1 cut(s)	322
HphI	GGTGA	1 cut(s)	871
Hpy166II	GTNNAC	2 cut(s)	148, 305
Hpy188I	TCNGA	7 cut(s)	369, 457, 470, 599, 849, 915, 953
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	2 cut(s)	148, 305
HpyAV	CCTTC	3 cut(s)	471, 581, 709
HpyCH4IV	ACGT	1 cut(s)	843
HpyCH4V	TGCA	8 cut(s)	62, 217, 290, 316, 511, 538, 649, 692
HpyF10VI	GCNNNNNNNGC	1 cut(s)	646
HpyF3I	CTNAG	3 cut(s)	48, 836, 950
HpySE526I	ACGT	1 cut(s)	843
Hsp92II	CATG	4 cut(s)	282, 335, 627, 969
Kpn2I	TCCGGA	1 cut(s)	321
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	118, 208, 270, 910
LmnI	GCTCC	1 cut(s)	4
LweI	GCATC	2 cut(s)	537, 685
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	1 cut(s)	843
MaeIII	GTNAC	3 cut(s)	739, 839, 859
MalI	GATC	4 cut(s)	120, 210, 272, 912
MboI	GATC	4 cut(s)	118, 208, 270, 910
MboII	GAAGA	7 cut(s)	53, 179, 214, 446, 901, 904, 928
MfeI	CAATTG	1 cut(s)	154
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	5 cut(s)	11, 36, 53, 154, 752
MlyI	GAGTC	1 cut(s)	418
MnlI	CCTC	6 cut(s)	37, 161, 192, 354, 394, 784
MroI	TCCGGA	1 cut(s)	321
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	1 cut(s)	351
MspA1I	CMGCKG	1 cut(s)	811
MspI	CCGG	1 cut(s)	322
MunI	CAATTG	1 cut(s)	154
Mva1269I	GAATGC	1 cut(s)	511
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	1 cut(s)	646
NdeII	GATC	4 cut(s)	118, 208, 270, 910
NlaIII	CATG	4 cut(s)	282, 335, 627, 969
NmuCI	GTSAC	2 cut(s)	839, 859
NspI	RCATGY	1 cut(s)	627
PaeR7I	CTCGAG	1 cut(s)	605
PciI	ACATGT	1 cut(s)	623
PctI	GAATGC	1 cut(s)	511
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	4 cut(s)	95, 187, 794, 881
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
PscI	ACATGT	1 cut(s)	623
PspFI	CCCAGC	1 cut(s)	807
PspPI	GGNCC	1 cut(s)	760
PspXI	VCTCGAGB	1 cut(s)	605
PsuI	RGATCY	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	811
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	351
Sau3AI	GATC	4 cut(s)	118, 208, 270, 910
Sau96I	GGNCC	1 cut(s)	760
SchI	GAGTC	1 cut(s)	418
SetI	ASST	9 cut(s)	9, 73, 90, 153, 237, 482, 774, 813, 846
SfaNI	GCATC	2 cut(s)	537, 685
Sfr274I	CTCGAG	1 cut(s)	605
SinI	GGWCC	1 cut(s)	760
SlaI	CTCGAG	1 cut(s)	605
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
Sse9I	AATT	5 cut(s)	11, 36, 53, 154, 752
SsiI	CCGC	3 cut(s)	398, 499, 583
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	1 cut(s)	101
TaiI	ACGT	1 cut(s)	846
TaqI	TCGA	2 cut(s)	124, 606
TasI	AATT	5 cut(s)	11, 36, 53, 154, 752
TfiI	GAWTC	4 cut(s)	95, 187, 794, 881
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	3 cut(s)	97, 844, 891
TseFI	GTSAC	2 cut(s)	839, 859
Tsp45I	GTSAC	2 cut(s)	839, 859
TspDTI	ATGAA	5 cut(s)	179, 392, 405, 408, 939
TspRI	CASTG	3 cut(s)	97, 844, 891
VpaK11BI	GGWCC	1 cut(s)	760
XceI	RCATGY	1 cut(s)	627
XcmI	CCANNNNNNNNNTGG	1 cut(s)	815
XhoI	CTCGAG	1 cut(s)	605
XmiI	GTMKAC	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.