Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001531

Physical Location & Seq

Genomic Coordinates Forward (+)

24150838 .. 24152287

Gene Structure 1450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCAACAATGGGTAAAAGATACACGTTGGTTCGCTCATTCAATGGATGAAAAGATGCTTGAAAGGCTCCGTTTGTTATCTCTAAATACATATAAAGAGAACCGCGTATATTCTGTGATCCTTGAAAGGAAGAAAATAGATCTACTGCAACTACTTCTACATAAGCTTCGTTTCGCAGATAATGCATACCAAAAGAAACCAATTGAGGCATGCTTGTCAGTTGAAGAGATGAGTAAACATAACTTGCATTTCCGGATGGTTCATGGAAGCAAGAATTTGGCCAAGGAAAAGCAGCTTCTGAAAGAGATCAAACGAAACCAGAGGCAGGATGAGAGGGAGGACAGTTTTGCTTTATTTTGGACTCAATTGGAAAAAGATCTTACATTTGTTCCTGAAAATACTGGGAACTATAGAAGGAACCAGAATTGGTGGTGGCAAATTGGTCGGCATGAACATATTTGGTGGTTGCAACACCAGATGCCATTCCTGATCAGCAAGGGAGATACCAAAGACCGTGAAGGAGAAATCAGAGAGCTCGAATGCAGAATCAAAAGCTGTGGAATTGTACTGGTAAGGAAAGCAGATAAACCACCAATTGCTAAGAATAATGCAAATGCTGGTCCAACTTTTGTGAAGGGAAAGACTTGGACTTCCTTGGATTCGAAAGAAGCCTTACGGGAGCAAATTAAGCTTGCTGGTAAGAAAATAGAGGAACTAAGGAAAACCCTGTTGGCTTTTGGTCCAACTCTTGGTCAAGCTAAGAGAAAGTTGGTGGATGTGGAAAAAGATATAGAATCACTGAGGAAGGAATTGCCAGTACTAGATCACAGGAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

33.19

Weight (kDa)

9.7

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11970
fragaria_vesca	FvH4_2g31530 FvH4_2g31540 FvH4_2g31541 FvH4_2g31550 FvH4_2g31590 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591
malus_domestica	MD08G1065000.v1.1 MD08G1065100.v1.1 MD08G1065200.v1.1 MD15G1056600.v1.1
prunus_persica	Prupe.1G409100_v2.0.a1 Prupe.1G409200_v2.0.a1
pyrus_communis	pycom08g05380 pycom08g05390 pycom15g05300
rosa_chinensis	RchiOBHm_Chr6g0311231
rosa_laevigata	RLG00000010424 RLG00000010425
rosa_multiflora	Rmu_sc0012046.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157850 Rroxscaffold_7G00157860 Rroxscaffold_7G00157870 Rroxscaffold_7G00157880
rosa_rugosa	Rorug06G0386700.1 Rorug06G0386800 Rorug06G0386800
rosa_samantha	Rh6AG500900 Rh6AG501000 Rh6AG501100 Rh6AG501200 Rh6BG511400 Rh6BG511500 Rh6BG511600 Rh6BG511700 Rh6BG511800 Rh6CG517200 Rh6CG517300 Rh6CG517400 Rh6CG517500 Rh6CG517700 Rh6DG503700 Rh6DG503800
rosa_wichuraiana	Rw6G043610 Rw6G043640 Rw6G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	749
AccII	CGCG	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	252
AciI	CCGC	1 cut(s)	103
AclWI	GGATC	1 cut(s)	112
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	274
AfaI	GTAC	2 cut(s)	567, 819
AfiI	CCNNNNNNNGG	2 cut(s)	325, 749
AflIII	ACRYGT	1 cut(s)	23
AgsI	TTSAA	4 cut(s)	42, 62, 125, 224
AjuI	GAANNNNNNNTTGG	2 cut(s)	713, 745
AluBI	AGCT	6 cut(s)	166, 295, 535, 555, 691, 758
AluI	AGCT	6 cut(s)	166, 295, 535, 555, 691, 758
Alw21I	GWGCWC	1 cut(s)	537
AlwI	GGATC	1 cut(s)	112
AlwNI	CAGNNNCTG	1 cut(s)	298
Aor13HI	TCCGGA	1 cut(s)	252
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	1 cut(s)	274
AspS9I	GGNCC	2 cut(s)	620, 740
AsuII	TTCGAA	1 cut(s)	662
AvaII	GGWCC	2 cut(s)	620, 740
BalI	TGGCCA	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	537
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	1 cut(s)	250
BcgI	CGANNNNNNTGC	2 cut(s)	425, 459
BclI	TGATCA	1 cut(s)	489
BfaI	CTAG	1 cut(s)	821
BfmI	CTRYAG	1 cut(s)	409
BglII	AGATCT	2 cut(s)	139, 376
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
BmcAI	AGTACT	1 cut(s)	819
Bme18I	GGWCC	2 cut(s)	620, 740
BmgT120I	GGNCC	2 cut(s)	620, 740
BmiI	GGNNCC	2 cut(s)	68, 419
BmrI	ACTGGG	1 cut(s)	411
BmsI	GCATC	2 cut(s)	45, 468
BmuI	ACTGGG	1 cut(s)	411
Bpu14I	TTCGAA	1 cut(s)	662
BsaJI	CCNNGG	2 cut(s)	282, 654
BsaWI	WCCGGW	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 749
Bse1I	ACTGG	3 cut(s)	406, 573, 815
BseAI	TCCGGA	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	282, 654
BseGI	GGATG	4 cut(s)	52, 261, 334, 781
BseLI	CCNNNNNNNGG	2 cut(s)	325, 749
BseMII	CTCAG	1 cut(s)	791
BseNI	ACTGG	3 cut(s)	406, 573, 815
BseXI	GCAGC	1 cut(s)	304
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	537
BsiSI	CCGG	1 cut(s)	253
BslI	CCNNNNNNNGG	2 cut(s)	325, 749
BsmI	GAATGC	1 cut(s)	545
BsnI	GGCC	1 cut(s)	281
Bsp119I	TTCGAA	1 cut(s)	662
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp13I	TCCGGA	1 cut(s)	252
Bsp143I	GATC	6 cut(s)	117, 139, 306, 376, 489, 823
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	1 cut(s)	792
BspEI	TCCGGA	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	2 cut(s)	68, 419
BspPI	GGATC	1 cut(s)	112
BspT104I	TTCGAA	1 cut(s)	662
BsrI	ACTGG	3 cut(s)	406, 573, 815
BssECI	CCNNGG	2 cut(s)	282, 654
BssMI	GATC	6 cut(s)	117, 139, 306, 376, 489, 823
BssT1I	CCWWGG	2 cut(s)	282, 654
Bst4CI	ACNGT	2 cut(s)	344, 515
Bst6I	CTCTTC	1 cut(s)	219
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstBI	TTCGAA	1 cut(s)	662
BstC8I	GCNNGC	2 cut(s)	211, 693
BstDEI	CTNAG	4 cut(s)	600, 716, 759, 800
BstF5I	GGATG	4 cut(s)	52, 261, 334, 781
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	6 cut(s)	120, 142, 309, 379, 492, 826
BstMBI	GATC	6 cut(s)	117, 139, 306, 376, 489, 823
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 182, 688
BstNSI	RCATGY	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	409
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	304
BstX2I	RGATCY	2 cut(s)	139, 376
BstYI	RGATCY	2 cut(s)	139, 376
BsuRI	GGCC	1 cut(s)	281
BtsCI	GGATG	4 cut(s)	52, 261, 334, 781
BtsIMutI	CAGTG	1 cut(s)	797
Cac8I	GCNNGC	2 cut(s)	211, 693
CaiI	CAGNNNCTG	1 cut(s)	298
Cfr13I	GGNCC	2 cut(s)	620, 740
Csp6I	GTAC	2 cut(s)	566, 818
CspCI	CAANNNNNGTGG	2 cut(s)	538, 573
CviAII	CATG	3 cut(s)	210, 263, 449
CviQI	GTAC	2 cut(s)	566, 818
DdeI	CTNAG	4 cut(s)	600, 716, 759, 800
DpnI	GATC	6 cut(s)	119, 141, 308, 378, 491, 825
DpnII	GATC	6 cut(s)	117, 139, 306, 376, 489, 823
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Ecl136II	GAGCTC	1 cut(s)	535
Eco130I	CCWWGG	2 cut(s)	282, 654
Eco24I	GRGCYC	1 cut(s)	537
Eco47I	GGWCC	2 cut(s)	620, 740
Eco53kI	GAGCTC	1 cut(s)	535
EcoICRI	GAGCTC	1 cut(s)	535
EcoT14I	CCWWGG	2 cut(s)	282, 654
EcoT22I	ATGCAT	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	537
ErhI	CCWWGG	2 cut(s)	282, 654
FaeI	CATG	3 cut(s)	213, 266, 452
FatI	CATG	3 cut(s)	209, 262, 448
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	1 cut(s)	293
FokI	GGATG	4 cut(s)	59, 268, 341, 788
FriOI	GRGCYC	1 cut(s)	537
Fsp4HI	GCNGC	1 cut(s)	293
FspBI	CTAG	1 cut(s)	821
GluI	GCNGC	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	1 cut(s)	253
Hin1II	CATG	3 cut(s)	213, 266, 452
HindIII	AAGCTT	2 cut(s)	164, 689
HinfI	GANTC	4 cut(s)	361, 546, 659, 794
HpaII	CCGG	1 cut(s)	253
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	2 cut(s)	300, 530
Hpy188III	TCNNGA	3 cut(s)	253, 392, 487
Hpy8I	GTNNAC	1 cut(s)	236
HpyAV	CCTTC	4 cut(s)	408, 512, 628, 799
HpyCH4III	ACNGT	2 cut(s)	344, 515
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	7 cut(s)	4, 148, 185, 247, 469, 543, 611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 182, 688
HpyF3I	CTNAG	4 cut(s)	600, 716, 759, 800
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	3 cut(s)	213, 266, 452
Kpn2I	TCCGGA	1 cut(s)	252
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	6 cut(s)	117, 139, 306, 376, 489, 823
LmnI	GCTCC	2 cut(s)	72, 679
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	2 cut(s)	45, 468
MaeI	CTAG	1 cut(s)	821
MaeII	ACGT	1 cut(s)	25
MalI	GATC	6 cut(s)	119, 141, 308, 378, 491, 825
MboI	GATC	6 cut(s)	117, 139, 306, 376, 489, 823
MboII	GAAGA	2 cut(s)	142, 236
MfeI	CAATTG	3 cut(s)	201, 365, 594
MflI	RGATCY	2 cut(s)	139, 376
MhlI	GDGCHC	1 cut(s)	537
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	9 cut(s)	201, 274, 365, 424, 438, 561, 594, 684, 809
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	355
MmeI	TCCRAC	2 cut(s)	647, 767
MnlI	CCTC	6 cut(s)	199, 315, 327, 331, 703, 795
Mox20I	TGGCCA	1 cut(s)	281
Mph1103I	ATGCAT	1 cut(s)	187
MroI	TCCGGA	1 cut(s)	252
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	1 cut(s)	687
Msp20I	TGGCCA	1 cut(s)	281
MspI	CCGG	1 cut(s)	253
MunI	CAATTG	3 cut(s)	201, 365, 594
Mva1269I	GAATGC	1 cut(s)	545
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	3 cut(s)	64, 182, 688
NdeII	GATC	6 cut(s)	117, 139, 306, 376, 489, 823
NlaIII	CATG	3 cut(s)	213, 266, 452
NlaIV	GGNNCC	2 cut(s)	68, 419
NsiI	ATGCAT	1 cut(s)	187
NspI	RCATGY	1 cut(s)	213
NspV	TTCGAA	1 cut(s)	662
PaeI	GCATGC	1 cut(s)	213
PctI	GAATGC	1 cut(s)	545
PfeI	GAWTC	3 cut(s)	546, 659, 794
PflMI	CCANNNNNTGG	1 cut(s)	749
PkrI	GCNGC	1 cut(s)	294
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
Psp124BI	GAGCTC	1 cut(s)	537
PspN4I	GGNNCC	2 cut(s)	68, 419
PspPI	GGNCC	2 cut(s)	620, 740
PstNI	CAGNNNCTG	1 cut(s)	298
PsuI	RGATCY	2 cut(s)	139, 376
RsaI	GTAC	2 cut(s)	567, 819
RsaNI	GTAC	2 cut(s)	566, 818
SacI	GAGCTC	1 cut(s)	537
SaqAI	TTAA	1 cut(s)	687
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	6 cut(s)	117, 139, 306, 376, 489, 823
Sau96I	GGNCC	2 cut(s)	620, 740
ScaI	AGTACT	1 cut(s)	819
SchI	GAGTC	1 cut(s)	355
SduI	GDGCHC	1 cut(s)	537
SetI	ASST	7 cut(s)	28, 168, 297, 537, 557, 693, 760
SfaNI	GCATC	2 cut(s)	45, 468
SfcI	CTRYAG	1 cut(s)	409
SfuI	TTCGAA	1 cut(s)	662
SinI	GGWCC	2 cut(s)	620, 740
SphI	GCATGC	1 cut(s)	213
Sse9I	AATT	9 cut(s)	201, 274, 365, 424, 438, 561, 594, 684, 809
SsiI	CCGC	1 cut(s)	103
SspMI	CTAG	1 cut(s)	821
SstI	GAGCTC	1 cut(s)	537
StyI	CCWWGG	2 cut(s)	282, 654
TaaI	ACNGT	2 cut(s)	344, 515
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	2 cut(s)	537, 662
TasI	AATT	9 cut(s)	201, 274, 365, 424, 438, 561, 594, 684, 809
TatI	WGTACW	2 cut(s)	565, 817
TfiI	GAWTC	3 cut(s)	546, 659, 794
Tru1I	TTAA	1 cut(s)	687
Tru9I	TTAA	1 cut(s)	687
TscAI	CASTG	1 cut(s)	804
TseI	GCWGC	1 cut(s)	292
TspDTI	ATGAA	3 cut(s)	63, 251, 465
TspGWI	ACGGA	1 cut(s)	59
TspRI	CASTG	1 cut(s)	804
Van91I	CCANNNNNTGG	1 cut(s)	749
VpaK11BI	GGWCC	2 cut(s)	620, 740
XapI	RAATTY	1 cut(s)	274
XceI	RCATGY	1 cut(s)	213
XspI	CTAG	1 cut(s)	821
ZrmI	AGTACT	1 cut(s)	819
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.