Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001531

Physical Location & Seq

Genomic Coordinates Reverse (-)

70722254 .. 70722972

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG511700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGTATCATGGAATCCCCATCCAATTTAAAGCAATTCAAAACATTATGGAGAAAGTGGATCCTAAATTAGAAGTCAAAATCAAAGAGGCTAAGAAGCTGATTGCAAAGATGGCTCAAGATAAACTTCAGTTCACTTATACATTAGAAGAAAAGATATTTGATGAGTTCTCTTTGGAGTCGTGGTTGCGATACCTGAATGCCCATGCCAGAAAGACCGTCTCAAATATTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

77

Amino Acids

9.18

Weight (kDa)

9.19

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11970
fragaria_vesca	FvH4_2g31530 FvH4_2g31540 FvH4_2g31541 FvH4_2g31550 FvH4_2g31590 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591
malus_domestica	MD08G1065000.v1.1 MD08G1065100.v1.1 MD08G1065200.v1.1 MD15G1056600.v1.1
prunus_persica	Prupe.1G409100_v2.0.a1 Prupe.1G409200_v2.0.a1
pyrus_communis	pycom08g05380 pycom08g05390 pycom15g05300
rosa_chinensis	RchiOBHm_Chr6g0311231
rosa_laevigata	RLG00000010424 RLG00000010425
rosa_multiflora	Rmu_sc0012046.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157850 Rroxscaffold_7G00157860 Rroxscaffold_7G00157870 Rroxscaffold_7G00157880
rosa_rugosa	Rorug06G0386700.1 Rorug06G0386800 Rorug06G0386800
rosa_samantha	Rh6AG500900 Rh6AG501000 Rh6AG501100 Rh6AG501200 Rh6BG511400 Rh6BG511500 Rh6BG511600 Rh6BG511700 Rh6BG511800 Rh6CG517200 Rh6CG517300 Rh6CG517400 Rh6CG517500 Rh6CG517700 Rh6DG503700 Rh6DG503800
rosa_wichuraiana	Rw6G043610 Rw6G043640 Rw6G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	53, 66
AcuI	CTGAAG	1 cut(s)	110
AgsI	TTSAA	1 cut(s)	38
AluBI	AGCT	1 cut(s)	97
AluI	AGCT	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	2 cut(s)	53, 66
BamHI	GGATCC	1 cut(s)	58
BccI	CCATC	2 cut(s)	26, 103
BcoDI	GTCTC	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	99
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
BseGI	GGATG	1 cut(s)	18
BsmAI	GTCTC	1 cut(s)	223
BsmBI	CGTCTC	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	202
Bsp143I	GATC	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	60
BspPI	GGATC	2 cut(s)	53, 66
BssMI	GATC	1 cut(s)	58
Bst4CI	ACNGT	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	90
BstF5I	GGATG	1 cut(s)	18
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	18
CviAII	CATG	2 cut(s)	8, 203
CviJI	RGCY	3 cut(s)	89, 97, 113
CviKI_1	RGCY	3 cut(s)	89, 97, 113
DdeI	CTNAG	1 cut(s)	90
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
DraI	TTTAAA	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	110
Esp3I	CGTCTC	1 cut(s)	223
FaeI	CATG	2 cut(s)	11, 206
FaiI	YATR	4 cut(s)	9, 47, 138, 204
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FatI	CATG	2 cut(s)	7, 202
FokI	GGATG	1 cut(s)	5
Hin1II	CATG	2 cut(s)	11, 206
HinfI	GANTC	2 cut(s)	12, 176
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	132
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
HpyF3I	CTNAG	1 cut(s)	90
Hsp92II	CATG	2 cut(s)	11, 206
Kzo9I	GATC	1 cut(s)	58
LpnPI	CCDG	2 cut(s)	206, 220
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	1 cut(s)	158
MflI	RGATCY	1 cut(s)	58
MluCI	AATT	3 cut(s)	23, 33, 65
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	1 cut(s)	79
MseI	TTAA	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	202
MwoI	GCNNNNNNNGC	1 cut(s)	110
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	2 cut(s)	11, 206
NlaIV	GGNNCC	1 cut(s)	60
PctI	GAATGC	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	12
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	58
SaqAI	TTAA	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	58
SchI	GAGTC	1 cut(s)	185
SetI	ASST	2 cut(s)	99, 195
SgeI	CNNG	6 cut(s)	20, 128, 192, 205, 215, 219
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	3 cut(s)	23, 33, 65
SspI	AATATT	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	217
TasI	AATT	3 cut(s)	23, 33, 65
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.