FvH4_2g31530

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001531
Physical Location & Seq
Forward (+)
24146489 .. 24149617
3129 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g31530.t1

Sequence Viewer

Length: 981 bp
ATGGGAGACCATAACAGATCAAAGTCTTATGGTGGCAGCGGGACCATGCAGATGGACAACTACTATGGACCCCCAAGAGCACCACCACCACCCACTTCTTATGAGCTCACCAGTTACAGTGCCTCCTATGCTCAGGCTCAGATGGGGAATTATCCATATAACTACAACAACAGGGATTTGAAGAAGGGGAAGGCTGCTACAGTGTCTAGGTCAAAGTCTTCTTCTTGGGCTCTGAGTGATCCTGAGTTGCAGAGGAAGAAGAGGGTTGCTAGCTACAAGATGTATGCTGTTGAGGGAAAGATGAAGGGCTCCTTCAGGAAAAGCTTCAGGTGGCTTAAGGCAATGCGATACACTGTGAAGAAAATGGATCCTGAATTAGAAGTCAAAATCAAAGAGGCTACGAAGCTGATTGCAGAGATGTCTCAAGATAAACTTCGGTTCAAATATTCATTACAGATGGTGCATGGAAGCAAGAGTTTGACAAAGGAAAAGCAGCTTTTGAAAGATATGAAACTGAGCCAGCAGGATGATAAGTTTGTTACATTTTGGACTCAATTGGAACAAGAACTTGAGATGCAGTTAAGGAAAGTGATTCTGAAGCCATTGCTAATAACAATGGAGTCAACAGAGATGTGGAATTGTAAGGCAAGTGATTATGATGCCATGGTCAAGAATAATGTGAATGCTAACGCTGCTTGGAAGGGAATAATTTCGAGTTCTTCGGGTTTAAAAAAAGCCTTACAGGAGAAAGTTAAGGTTGCTTCTGAAAGAATAGAAGAATTAAGAAAAACCCTACTGGCTCTTGGTCTTGGGAAAATAATTAGTCAAGTTGAGAGAGAATCAGAAGCCATGAAAAGGGGTATAGATTCATGGAGAAAGAGATTTCCATATCAGATTGTATACGAGAACGTTTGGAGACACAGTGATGTGAATTCCATGAGGTTGGAATCTTTATCATACTGTTACTACTATTACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

327

Amino Acids

37.9

Weight (kDa)

9.67

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 79 - 114 1.4e-20 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 900
AciI CCGC 1 cut(s) 39
AclI AACGTT 1 cut(s) 909
AclWI GGATC 3 cut(s) 233, 362, 375
AcsI RAATTY 1 cut(s) 931
AcuI CTGAAG 3 cut(s) 298, 310, 617
AfiI CCNNNNNNNGG 1 cut(s) 855
AflII CTTAAG 1 cut(s) 335
AgsI TTSAA 3 cut(s) 181, 442, 502
AluBI AGCT 5 cut(s) 106, 273, 324, 406, 496
AluI AGCT 5 cut(s) 106, 273, 324, 406, 496
Alw21I GWGCWC 2 cut(s) 82, 108
Alw26I GTCTC 2 cut(s) 426, 910
AlwI GGATC 3 cut(s) 233, 362, 375
ApeKI GCWGC 4 cut(s) 36, 194, 493, 692
ApoI RAATTY 1 cut(s) 931
Asp700I GAANNNNTTC 2 cut(s) 323, 709
AspS9I GGNCC 2 cut(s) 42, 68
AsuHPI GGTGA 1 cut(s) 100
AsuNHI GCTAGC 1 cut(s) 269
AvaII GGWCC 2 cut(s) 42, 68
BamHI GGATCC 1 cut(s) 367
BanII GRGCYC 3 cut(s) 108, 232, 311
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 2 cut(s) 82, 108
BbvI GCAGC 4 cut(s) 48, 181, 505, 679
BccI CCATC 3 cut(s) 46, 136, 451
BcoDI GTCTC 2 cut(s) 426, 910
BfaI CTAG 2 cut(s) 207, 270
BfmI CTRYAG 1 cut(s) 198
BfrI CTTAAG 1 cut(s) 335
BisI GCNGC 4 cut(s) 37, 195, 494, 693
BlsI GCNGC 4 cut(s) 38, 196, 495, 694
Bme18I GGWCC 2 cut(s) 42, 68
BmgT120I GGNCC 2 cut(s) 42, 68
BmiI GGNNCC 4 cut(s) 43, 70, 310, 369
BmsI GCATC 2 cut(s) 564, 649
BmtI GCTAGC 1 cut(s) 273
BpiI GAAGAC 1 cut(s) 210
Bpu10I CCTNAGC 1 cut(s) 132
BpuEI CTTGAG 2 cut(s) 408, 590
BsaJI CCNNGG 1 cut(s) 663
BsaXI ACNNNNNCTCC 4 cut(s) 107, 137, 907, 937
Bsc4I CCNNNNNNNGG 1 cut(s) 855
Bse1I ACTGG 2 cut(s) 111, 801
Bse3DI GCAATG 2 cut(s) 348, 602
BseDI CCNNGG 1 cut(s) 663
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 1 cut(s) 855
BseMI GCAATG 2 cut(s) 348, 602
BseMII CTCAG 5 cut(s) 146, 152, 224, 234, 506
BseNI ACTGG 2 cut(s) 111, 801
BseXI GCAGC 4 cut(s) 48, 181, 505, 679
BsiHKAI GWGCWC 2 cut(s) 82, 108
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 855
BsmAI GTCTC 2 cut(s) 426, 910
BsmFI GGGAC 1 cut(s) 55
BsmI GAATGC 1 cut(s) 688
Bsp1286I GDGCHC 4 cut(s) 82, 108, 232, 311
Bsp143I GATC 3 cut(s) 17, 238, 367
Bsp19I CCATGG 1 cut(s) 663
BspACI CCGC 1 cut(s) 39
BspCNI CTCAG 5 cut(s) 145, 151, 225, 235, 507
BspLI GGNNCC 4 cut(s) 43, 70, 310, 369
BspOI GCTAGC 1 cut(s) 273
BspPI GGATC 3 cut(s) 233, 362, 375
BspTI CTTAAG 1 cut(s) 335
BsrDI GCAATG 2 cut(s) 348, 602
BsrI ACTGG 2 cut(s) 111, 801
BssECI CCNNGG 1 cut(s) 663
BssMI GATC 3 cut(s) 17, 238, 367
BssNAI GTATAC 1 cut(s) 901
BssT1I CCWWGG 1 cut(s) 663
Bst1107I GTATAC 1 cut(s) 901
Bst4CI ACNGT 5 cut(s) 119, 202, 355, 923, 962
Bst6I CTCTTC 1 cut(s) 254
BstAFI CTTAAG 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 271, 521
BstDEI CTNAG 5 cut(s) 132, 138, 233, 243, 515
BstDSI CCRYGG 1 cut(s) 663
BstF5I GGATG 1 cut(s) 532
BstKTI GATC 3 cut(s) 20, 241, 370
BstMAI GTCTC 2 cut(s) 426, 910
BstMBI GATC 3 cut(s) 17, 238, 367
BstMWI GCNNNNNNNGC 2 cut(s) 128, 692
BstSFI CTRYAG 1 cut(s) 198
BstV1I GCAGC 4 cut(s) 48, 181, 505, 679
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 367
BstXI CCANNNNNNTGG 2 cut(s) 52, 943
BstYI RGATCY 1 cut(s) 367
BstZ17I GTATAC 1 cut(s) 901
BtgI CCRYGG 1 cut(s) 663
BtsCI GGATG 1 cut(s) 532
BtsIMutI CAGTG 4 cut(s) 124, 207, 351, 928
Cac8I GCNNGC 2 cut(s) 271, 521
Cfr13I GGNCC 2 cut(s) 42, 68
CviAII CATG 6 cut(s) 46, 464, 664, 850, 870, 937
DdeI CTNAG 5 cut(s) 132, 138, 233, 243, 515
DpnI GATC 3 cut(s) 19, 240, 369
DpnII GATC 3 cut(s) 17, 238, 367
DraI TTTAAA 1 cut(s) 729
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
Ecl136II GAGCTC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 663
Eco24I GRGCYC 3 cut(s) 108, 232, 311
Eco47I GGWCC 2 cut(s) 42, 68
Eco53kI GAGCTC 1 cut(s) 106
Eco57I CTGAAG 3 cut(s) 298, 310, 617
EcoICRI GAGCTC 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 931
EcoT14I CCWWGG 1 cut(s) 663
EcoT38I GRGCYC 3 cut(s) 108, 232, 311
ErhI CCWWGG 1 cut(s) 663
FaeI CATG 6 cut(s) 49, 467, 667, 853, 873, 940
FalI AAGNNNNNCTT 4 cut(s) 296, 328, 417, 449
FaqI GGGAC 1 cut(s) 55
FatI CATG 6 cut(s) 45, 463, 663, 849, 869, 936
FauI CCCGC 1 cut(s) 32
FblI GTMKAC 1 cut(s) 900
Fnu4HI GCNGC 4 cut(s) 37, 195, 494, 693
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 3 cut(s) 108, 232, 311
Fsp4HI GCNGC 4 cut(s) 37, 195, 494, 693
FspBI CTAG 2 cut(s) 207, 270
GluI GCNGC 4 cut(s) 37, 195, 494, 693
Hin1II CATG 6 cut(s) 49, 467, 667, 853, 873, 940
HincII GTYRAC 1 cut(s) 624
HindII GTYRAC 1 cut(s) 624
HindIII AAGCTT 1 cut(s) 322
HinfI GANTC 6 cut(s) 550, 592, 620, 839, 866, 947
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 2 cut(s) 624, 901
Hpy188I TCNGA 6 cut(s) 141, 234, 597, 766, 844, 894
Hpy188III TCNNGA 5 cut(s) 242, 316, 371, 425, 670
Hpy8I GTNNAC 2 cut(s) 624, 901
HpyAV CCTTC 5 cut(s) 178, 184, 298, 322, 694
HpyCH4III ACNGT 5 cut(s) 119, 202, 355, 923, 962
HpyCH4IV ACGT 1 cut(s) 909
HpyCH4V TGCA 5 cut(s) 49, 250, 413, 463, 577
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 692
HpyF3I CTNAG 5 cut(s) 132, 138, 233, 243, 515
HpySE526I ACGT 1 cut(s) 909
Hsp92II CATG 6 cut(s) 49, 467, 667, 853, 873, 940
Kzo9I GATC 3 cut(s) 17, 238, 367
LmnI GCTCC 1 cut(s) 314
Lsp1109I GCAGC 4 cut(s) 48, 181, 505, 679
LweI GCATC 2 cut(s) 564, 649
MaeI CTAG 2 cut(s) 207, 270
MaeII ACGT 1 cut(s) 909
MaeIII GTNAC 3 cut(s) 113, 538, 962
MalI GATC 3 cut(s) 19, 240, 369
MboI GATC 3 cut(s) 17, 238, 367
MboII GAAGA 8 cut(s) 193, 210, 213, 268, 271, 370, 711, 788
MfeI CAATTG 1 cut(s) 554
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 4 cut(s) 82, 108, 232, 311
MluCI AATT 8 cut(s) 148, 374, 554, 637, 708, 779, 819, 931
MlyI GAGTC 2 cut(s) 544, 629
MmeI TCCRAC 1 cut(s) 924
MnlI CCTC 6 cut(s) 133, 246, 255, 286, 388, 933
MroXI GAANNNNTTC 2 cut(s) 323, 709
MseI TTAA 5 cut(s) 336, 581, 728, 753, 782
MslI CAYNNNNRTG 2 cut(s) 50, 924
MspA1I CMGCKG 1 cut(s) 39
MspCI CTTAAG 1 cut(s) 335
MunI CAATTG 1 cut(s) 554
Mva1269I GAATGC 1 cut(s) 688
MwoI GCNNNNNNNGC 2 cut(s) 128, 692
NcoI CCATGG 1 cut(s) 663
NdeII GATC 3 cut(s) 17, 238, 367
NheI GCTAGC 1 cut(s) 269
NlaIII CATG 6 cut(s) 49, 467, 667, 853, 873, 940
NlaIV GGNNCC 4 cut(s) 43, 70, 310, 369
PctI GAATGC 1 cut(s) 688
PdmI GAANNNNTTC 2 cut(s) 323, 709
PfeI GAWTC 4 cut(s) 592, 839, 866, 947
PkrI GCNGC 4 cut(s) 38, 196, 495, 694
PleI GAGTC 2 cut(s) 544, 628
PpsI GAGTC 2 cut(s) 544, 628
Psp124BI GAGCTC 1 cut(s) 108
Psp1406I AACGTT 1 cut(s) 909
PspN4I GGNNCC 4 cut(s) 43, 70, 310, 369
PspPI GGNCC 2 cut(s) 42, 68
PsuI RGATCY 1 cut(s) 367
RseI CAYNNNNRTG 2 cut(s) 50, 924
SacI GAGCTC 1 cut(s) 108
SaqAI TTAA 5 cut(s) 336, 581, 728, 753, 782
SatI GCNGC 4 cut(s) 37, 195, 494, 693
Sau3AI GATC 3 cut(s) 17, 238, 367
Sau96I GGNCC 2 cut(s) 42, 68
SchI GAGTC 2 cut(s) 544, 629
SduI GDGCHC 4 cut(s) 82, 108, 232, 311
SfaNI GCATC 2 cut(s) 564, 649
SfcI CTRYAG 1 cut(s) 198
SinI GGWCC 2 cut(s) 42, 68
SmiMI CAYNNNNRTG 2 cut(s) 50, 924
SmlI CTYRAG 3 cut(s) 335, 423, 569
SmoI CTYRAG 3 cut(s) 335, 423, 569
Sse9I AATT 8 cut(s) 148, 374, 554, 637, 708, 779, 819, 931
SsiI CCGC 1 cut(s) 39
SspI AATATT 1 cut(s) 446
SspMI CTAG 2 cut(s) 207, 270
SstI GAGCTC 1 cut(s) 108
StyI CCWWGG 1 cut(s) 663
TaaI ACNGT 5 cut(s) 119, 202, 355, 923, 962
TaiI ACGT 1 cut(s) 912
TaqI TCGA 1 cut(s) 713
TasI AATT 8 cut(s) 148, 374, 554, 637, 708, 779, 819, 931
TfiI GAWTC 4 cut(s) 592, 839, 866, 947
Tru1I TTAA 5 cut(s) 336, 581, 728, 753, 782
Tru9I TTAA 5 cut(s) 336, 581, 728, 753, 782
TscAI CASTG 4 cut(s) 124, 207, 358, 928
TseI GCWGC 4 cut(s) 36, 194, 493, 692
TspDTI ATGAA 5 cut(s) 317, 438, 524, 858, 866
TspRI CASTG 4 cut(s) 124, 207, 358, 928
Vha464I CTTAAG 1 cut(s) 335
VpaK11BI GGWCC 2 cut(s) 42, 68
XapI RAATTY 1 cut(s) 931
XmiI GTMKAC 1 cut(s) 900
XmnI GAANNNNTTC 2 cut(s) 323, 709
XspI CTAG 2 cut(s) 207, 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.