Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001531

Physical Location & Seq

Genomic Coordinates Forward (+)

35806972 .. 35808789

Gene Structure 1818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G409200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGAGGAATTGGAAGCTAATTGTATGCAAATGGCTCTGATACTTGAATGCGAAGGAGACAACAATCGGTTGCAAGAAGTTGGTGGGCTTATAAAGGATGCCGCTGCTGCAGAGCTAAATCTAAAATCCAGAATTGAAGAGGCTGAGAAGCTGCTTGCAAAGATCAGGCAACATAAGCTTGAGCTGGCTGAAGACATAGCGCAAAGGGTGTGTGATCGGAGATGTACCCTTCTTCCTCGGTTGGACTGCTTGATTTGTTATGGAAGGGGACTCGAACACTGCTTGACCCTGGAGAGGGAGAAAATGAATATATTGCAACTATTTCTGCTTCGTTTCACAGACAAATCTAACCAAAGAAAACCAATTAAGCCCTGCTTGCCCGGAGAAGAGATAGCTAAACGTAAATTGAATTTCAGGATGGGACACGGAACCAGAAGTTTGGCTAAGGAAAAACAGCTTCTGAAACAGATCAATGTGAGCCAGAAGGGGGGTGTTTGTTTATTTTCCTCACTTGAAGAGGAATATCATAAGCTTCCAGAATATTATTCGTGGTGGCATTACGAGAGATGGTATCAGACCAATCAGAGAAATATAGTTCAATACCGCCTAAGACAAATCCAACAACTTAAATGGCAAAGGGAAAGTTTGGCAGTTCTATTGCAAGGGCAATGGGATGAAGCTATTGCTAAAGCTAGTGGGAATGCTAATGCTAATGCCAATGCTGCTGCCAATGCTATTGCCAAGGGAAAGATTTGGGATTCTTTGGGTTCAAAAAAGTCCTTACTGGAACAAATCAAAGTTACTGGTAAGGCGATAGATGGATTAACTAAATTACTGTTGGCTGTGCGGCCAAAAATTAACCAAGTTGAGAATGAATTGAAGGTCGCTGAGAAAGATATAGAGACCTTGCAGAAAAAACTACCATGGATTGATCAGAAGAAAGATGAAGCACACCAATGCATTCACAAACTGAAAAAACAACAGAGTGAGGAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

333

Amino Acids

38.3

Weight (kDa)

9.01

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11970
fragaria_vesca	FvH4_2g31530 FvH4_2g31540 FvH4_2g31541 FvH4_2g31550 FvH4_2g31590 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591
malus_domestica	MD08G1065000.v1.1 MD08G1065100.v1.1 MD08G1065200.v1.1 MD15G1056600.v1.1
prunus_persica	Prupe.1G409100_v2.0.a1 Prupe.1G409200_v2.0.a1
pyrus_communis	pycom08g05380 pycom08g05390 pycom15g05300
rosa_chinensis	RchiOBHm_Chr6g0311231
rosa_laevigata	RLG00000010424 RLG00000010425
rosa_multiflora	Rmu_sc0012046.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157850 Rroxscaffold_7G00157860 Rroxscaffold_7G00157870 Rroxscaffold_7G00157880
rosa_rugosa	Rorug06G0386700.1 Rorug06G0386800 Rorug06G0386800
rosa_samantha	Rh6AG500900 Rh6AG501000 Rh6AG501100 Rh6AG501200 Rh6BG511400 Rh6BG511500 Rh6BG511600 Rh6BG511700 Rh6BG511800 Rh6CG517200 Rh6CG517300 Rh6CG517400 Rh6CG517500 Rh6CG517700 Rh6DG503700 Rh6DG503800
rosa_wichuraiana	Rw6G043610 Rw6G043640 Rw6G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	92
AciI	CCGC	3 cut(s)	102, 604, 847
AcoI	YGGCCR	1 cut(s)	848
AcsI	RAATTY	1 cut(s)	409
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	226
AfiI	CCNNNNNNNGG	3 cut(s)	294, 295, 487
AgsI	TTSAA	7 cut(s)	47, 137, 409, 515, 599, 771, 880
AjnI	CCWGG	1 cut(s)	288
Alw26I	GTCTC	2 cut(s)	51, 896
AlwNI	CAGNNNCTG	1 cut(s)	460
AoxI	GGCC	1 cut(s)	848
ApeKI	GCWGC	5 cut(s)	104, 107, 151, 722, 725
ApoI	RAATTY	1 cut(s)	409
AspLEI	GCGC	1 cut(s)	202
AsuC2I	CCSGG	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	198
BbvI	GCAGC	5 cut(s)	91, 94, 138, 709, 712
BccI	CCATC	3 cut(s)	412, 561, 812
BciT130I	CCWGG	1 cut(s)	290
BclI	TGATCA	1 cut(s)	931
BcnI	CCSGG	1 cut(s)	381
BcoDI	GTCTC	2 cut(s)	51, 896
BfaI	CTAG	1 cut(s)	693
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	7 cut(s)	102, 105, 108, 152, 723, 726, 848
BlsI	GCNGC	7 cut(s)	103, 106, 109, 153, 724, 727, 849
Bme1390I	CCNGG	2 cut(s)	290, 381
BmiI	GGNNCC	1 cut(s)	430
BmrFI	CCNGG	2 cut(s)	290, 381
BmsI	GCATC	1 cut(s)	88
BpiI	GAAGAC	1 cut(s)	198
BpmI	CTGGAG	1 cut(s)	311
Bpu10I	CCTNAGC	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	381
BsaI	GGTCTC	1 cut(s)	896
BsaJI	CCNNGG	4 cut(s)	236, 288, 741, 923
Bsc4I	CCNNNNNNNGG	3 cut(s)	294, 295, 487
Bse1I	ACTGG	2 cut(s)	789, 808
Bse3DI	GCAATG	1 cut(s)	674
BseBI	CCWGG	1 cut(s)	290
BseDI	CCNNGG	4 cut(s)	236, 288, 741, 923
BseGI	GGATG	3 cut(s)	103, 423, 679
BseLI	CCNNNNNNNGG	3 cut(s)	294, 295, 487
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	2 cut(s)	135, 879
BseNI	ACTGG	2 cut(s)	789, 808
BseXI	GCAGC	5 cut(s)	91, 94, 138, 709, 712
BshFI	GGCC	1 cut(s)	850
BsiSI	CCGG	1 cut(s)	381
BslFI	GGGAC	2 cut(s)	282, 435
BslI	CCNNNNNNNGG	3 cut(s)	294, 295, 487
BsmAI	GTCTC	2 cut(s)	51, 896
BsmFI	GGGAC	2 cut(s)	282, 435
BsmI	GAATGC	3 cut(s)	53, 706, 960
BsnI	GGCC	1 cut(s)	850
Bso31I	GGTCTC	1 cut(s)	896
Bsp143I	GATC	4 cut(s)	162, 214, 468, 931
Bsp19I	CCATGG	1 cut(s)	923
BspACI	CCGC	3 cut(s)	102, 604, 847
BspANI	GGCC	1 cut(s)	850
BspCNI	CTCAG	2 cut(s)	136, 880
BspLI	GGNNCC	1 cut(s)	430
BspMAI	CTGCAG	1 cut(s)	112
BspTNI	GGTCTC	1 cut(s)	896
BsrDI	GCAATG	1 cut(s)	674
BsrI	ACTGG	2 cut(s)	789, 808
BssECI	CCNNGG	4 cut(s)	236, 288, 741, 923
BssMI	GATC	4 cut(s)	162, 214, 468, 931
BssT1I	CCWWGG	2 cut(s)	741, 923
Bst2UI	CCWGG	1 cut(s)	290
Bst4CI	ACNGT	1 cut(s)	837
Bst6I	CTCTTC	3 cut(s)	132, 381, 510
BstC8I	GCNNGC	3 cut(s)	156, 186, 377
BstDEI	CTNAG	4 cut(s)	144, 444, 608, 888
BstDSI	CCRYGG	1 cut(s)	923
BstF5I	GGATG	3 cut(s)	103, 423, 679
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	4 cut(s)	165, 217, 471, 934
BstMAI	GTCTC	2 cut(s)	51, 896
BstMBI	GATC	4 cut(s)	162, 214, 468, 931
BstMWI	GCNNNNNNNGC	5 cut(s)	107, 175, 376, 722, 731
BstNI	CCWGG	1 cut(s)	290
BstSCI	CCNGG	2 cut(s)	288, 379
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	5 cut(s)	91, 94, 138, 709, 712
BstV2I	GAAGAC	1 cut(s)	198
BstXI	CCANNNNNNTGG	1 cut(s)	439
BsuRI	GGCC	1 cut(s)	850
BtgI	CCRYGG	1 cut(s)	923
BtsCI	GGATG	3 cut(s)	103, 423, 679
BtsI	GCAGTG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	277
Cac8I	GCNNGC	3 cut(s)	156, 186, 377
CaiI	CAGNNNCTG	1 cut(s)	460
CfoI	GCGC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	225
CviAII	CATG	1 cut(s)	924
CviQI	GTAC	1 cut(s)	225
DdeI	CTNAG	4 cut(s)	144, 444, 608, 888
DpnI	GATC	4 cut(s)	164, 216, 470, 933
DpnII	GATC	4 cut(s)	162, 214, 468, 931
EaeI	YGGCCR	1 cut(s)	848
Eam1104I	CTCTTC	3 cut(s)	132, 381, 510
EarI	CTCTTC	3 cut(s)	132, 381, 510
Eco130I	CCWWGG	2 cut(s)	741, 923
Eco31I	GGTCTC	1 cut(s)	896
Eco57I	CTGAAG	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	288
EcoT14I	CCWWGG	2 cut(s)	741, 923
EcoT22I	ATGCAT	1 cut(s)	962
ErhI	CCWWGG	2 cut(s)	741, 923
FaeI	CATG	1 cut(s)	927
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	2 cut(s)	282, 435
FatI	CATG	1 cut(s)	923
FbaI	TGATCA	1 cut(s)	931
Fnu4HI	GCNGC	7 cut(s)	102, 105, 108, 152, 723, 726, 848
FokI	GGATG	3 cut(s)	110, 430, 686
Fsp4HI	GCNGC	7 cut(s)	102, 105, 108, 152, 723, 726, 848
FspBI	CTAG	1 cut(s)	693
GlaI	GCGC	1 cut(s)	201
GluI	GCNGC	7 cut(s)	102, 105, 108, 152, 723, 726, 848
GsuI	CTGGAG	1 cut(s)	311
HaeIII	GGCC	1 cut(s)	850
HapII	CCGG	1 cut(s)	381
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	1 cut(s)	927
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HindIII	AAGCTT	2 cut(s)	176, 530
HinfI	GANTC	2 cut(s)	270, 758
HpaII	CCGG	1 cut(s)	381
Hpy188I	TCNGA	6 cut(s)	39, 219, 462, 576, 585, 936
Hpy188III	TCNNGA	3 cut(s)	129, 415, 536
HpyAV	CCTTC	5 cut(s)	47, 239, 258, 478, 874
HpyCH4III	ACNGT	1 cut(s)	837
HpyCH4IV	ACGT	1 cut(s)	400
HpyCH4V	TGCA	8 cut(s)	28, 73, 110, 158, 316, 661, 910, 960
HpyF10VI	GCNNNNNNNGC	5 cut(s)	107, 175, 376, 722, 731
HpyF3I	CTNAG	4 cut(s)	144, 444, 608, 888
HpySE526I	ACGT	1 cut(s)	400
Hsp92II	CATG	1 cut(s)	927
HspAI	GCGC	1 cut(s)	200
Ksp22I	TGATCA	1 cut(s)	931
Kzo9I	GATC	4 cut(s)	162, 214, 468, 931
Lsp1109I	GCAGC	5 cut(s)	91, 94, 138, 709, 712
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	1 cut(s)	400
MaeIII	GTNAC	1 cut(s)	799
MalI	GATC	4 cut(s)	164, 216, 470, 933
MboI	GATC	4 cut(s)	162, 214, 468, 931
MboII	GAAGA	6 cut(s)	149, 203, 224, 398, 527, 949
MluCI	AATT	9 cut(s)	8, 19, 132, 363, 404, 409, 830, 855, 875
MlyI	GAGTC	1 cut(s)	264
MmeI	TCCRAC	2 cut(s)	222, 643
MnlI	CCTC	6 cut(s)	133, 246, 288, 511, 517, 982
Mph1103I	ATGCAT	1 cut(s)	962
MseI	TTAA	4 cut(s)	366, 627, 824, 858
MslI	CAYNNNNRTG	1 cut(s)	955
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	1 cut(s)	381
MspR9I	CCNGG	2 cut(s)	290, 381
Mva1269I	GAATGC	3 cut(s)	53, 706, 960
MvaI	CCWGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	5 cut(s)	107, 175, 376, 722, 731
NciI	CCSGG	1 cut(s)	381
NcoI	CCATGG	1 cut(s)	923
NdeII	GATC	4 cut(s)	162, 214, 468, 931
NlaIII	CATG	1 cut(s)	927
NlaIV	GGNNCC	1 cut(s)	430
NsiI	ATGCAT	1 cut(s)	962
PctI	GAATGC	3 cut(s)	53, 706, 960
PfeI	GAWTC	1 cut(s)	758
PkrI	GCNGC	7 cut(s)	103, 106, 109, 153, 724, 727, 849
PleI	GAGTC	1 cut(s)	264
PpsI	GAGTC	1 cut(s)	264
PsiI	TTATAA	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	288
PspN4I	GGNNCC	1 cut(s)	430
PstI	CTGCAG	1 cut(s)	112
PstNI	CAGNNNCTG	1 cut(s)	460
RsaI	GTAC	1 cut(s)	226
RsaNI	GTAC	1 cut(s)	225
RseI	CAYNNNNRTG	1 cut(s)	955
SaqAI	TTAA	4 cut(s)	366, 627, 824, 858
SatI	GCNGC	7 cut(s)	102, 105, 108, 152, 723, 726, 848
Sau3AI	GATC	4 cut(s)	162, 214, 468, 931
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	2 cut(s)	290, 381
SfaNI	GCATC	1 cut(s)	88
SfcI	CTRYAG	1 cut(s)	108
SmiMI	CAYNNNNRTG	1 cut(s)	955
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	9 cut(s)	8, 19, 132, 363, 404, 409, 830, 855, 875
SsiI	CCGC	3 cut(s)	102, 604, 847
SspI	AATATT	1 cut(s)	542
SspMI	CTAG	1 cut(s)	693
StyD4I	CCNGG	2 cut(s)	288, 379
StyI	CCWWGG	2 cut(s)	741, 923
TaaI	ACNGT	1 cut(s)	837
TaiI	ACGT	1 cut(s)	403
TaqI	TCGA	1 cut(s)	273
TasI	AATT	9 cut(s)	8, 19, 132, 363, 404, 409, 830, 855, 875
TauI	GCSGC	2 cut(s)	104, 850
TfiI	GAWTC	1 cut(s)	758
Tru1I	TTAA	4 cut(s)	366, 627, 824, 858
Tru9I	TTAA	4 cut(s)	366, 627, 824, 858
TscAI	CASTG	1 cut(s)	284
TseI	GCWGC	5 cut(s)	104, 107, 151, 722, 725
TspDTI	ATGAA	4 cut(s)	320, 690, 888, 960
TspGWI	ACGGA	1 cut(s)	441
TspRI	CASTG	1 cut(s)	284
XapI	RAATTY	1 cut(s)	409
XspI	CTAG	1 cut(s)	693
Zsp2I	ATGCAT	1 cut(s)	962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.