MD08G1065000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0001531
Physical Location & Seq
Reverse (-)
5162121 .. 5162618
498 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1065000.v1.1.491

Sequence Viewer

Length: 405 bp
ATGCGACTCTGCATTTTCTTATGTAATGAAATATGTGATGTGATATTATTGAAACTTCTTCAACAGTATGATTTGTATTGTGCCTGTTCACTGTTGGACTACTACCGGAATAGGCACAAAGCGGGGATCAGAGACTGTTTGAACCTGGAGAGGGAGAAAATGAATATACTGCAACTATTTCTGCTACGTTGCGCAAATAAATCTCACCCCGGTTTGTCAGTAGAAGGCATAGCCAAACATAAACTGAGTTTCCGGATGGTACATGGAACAAACAACTTGGCCGAGGAAAAGCGGCTCTTGAAAGAGATCAATGTGAGCGAGGAGGTTTCTGCCGGTTCATTGTCCTCATTGGAAAACGACTATCATATGCTTCCTGAAAATGTAAGAATGAACATTACATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.56

Weight (kDa)

7.6

Isoelectric Point (pI)

53.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 193
AccIII TCCGGA 1 cut(s) 252
AciI CCGC 2 cut(s) 122, 292
AclWI GGATC 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 279
AfaI GTAC 1 cut(s) 261
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 4 cut(s) 52, 62, 142, 301
AjnI CCWGG 1 cut(s) 144
Alw26I GTCTC 1 cut(s) 126
AlwI GGATC 1 cut(s) 134
AlwNI CAGNNNCTG 1 cut(s) 135
Aor13HI TCCGGA 1 cut(s) 252
AoxI GGCC 1 cut(s) 279
AspLEI GCGC 1 cut(s) 194
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 197
BccI CCATC 1 cut(s) 250
BciT130I CCWGG 1 cut(s) 146
BcnI CCSGG 1 cut(s) 210
BcoDI GTCTC 1 cut(s) 126
BisI GCNGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 294
Bme1390I CCNGG 2 cut(s) 146, 210
BmrFI CCNGG 2 cut(s) 146, 210
BpmI CTGGAG 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 208, 282
BsaWI WCCGGW 2 cut(s) 105, 252
Bsc4I CCNNNNNNNGG 1 cut(s) 151
Bse118I RCCGGY 1 cut(s) 332
BseAI TCCGGA 1 cut(s) 252
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 2 cut(s) 208, 282
BseGI GGATG 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 236
BseRI GAGGAG 1 cut(s) 335
BshFI GGCC 1 cut(s) 281
BsiSI CCGG 4 cut(s) 106, 210, 253, 333
BslI CCNNNNNNNGG 1 cut(s) 151
BsmAI GTCTC 1 cut(s) 126
BsnI GGCC 1 cut(s) 281
Bsp13I TCCGGA 1 cut(s) 252
Bsp143I GATC 2 cut(s) 126, 306
BspACI CCGC 2 cut(s) 122, 292
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 1 cut(s) 237
BspEI TCCGGA 1 cut(s) 252
BspPI GGATC 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 332
BssAI RCCGGY 1 cut(s) 332
BssECI CCNNGG 2 cut(s) 208, 282
BssMI GATC 2 cut(s) 126, 306
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 3 cut(s) 66, 93, 137
BstDEI CTNAG 1 cut(s) 245
BstF5I GGATG 1 cut(s) 261
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 2 cut(s) 129, 309
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 2 cut(s) 126, 306
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 2 cut(s) 144, 208
BsuRI GGCC 1 cut(s) 281
BtsCI GGATG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 89
CaiI CAGNNNCTG 1 cut(s) 135
CfoI GCGC 1 cut(s) 194
Cfr10I RCCGGY 1 cut(s) 332
Csp6I GTAC 1 cut(s) 260
CviAII CATG 1 cut(s) 263
CviJI RGCY 3 cut(s) 233, 281, 295
CviKI_1 RGCY 3 cut(s) 233, 281, 295
CviQI GTAC 1 cut(s) 260
DdeI CTNAG 1 cut(s) 245
DpnI GATC 2 cut(s) 128, 308
DpnII GATC 2 cut(s) 126, 306
EaeI YGGCCR 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 144
FaeI CATG 1 cut(s) 266
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FatI CATG 1 cut(s) 262
FauI CCCGC 1 cut(s) 115
FauNDI CATATG 1 cut(s) 366
Fnu4HI GCNGC 1 cut(s) 293
FokI GGATG 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 293
FspI TGCGCA 1 cut(s) 193
GlaI GCGC 1 cut(s) 193
GluI GCNGC 1 cut(s) 293
GsuI CTGGAG 1 cut(s) 167
HaeIII GGCC 1 cut(s) 281
HapII CCGG 4 cut(s) 106, 210, 253, 333
HhaI GCGC 1 cut(s) 194
Hin1II CATG 1 cut(s) 266
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HinfI GANTC 1 cut(s) 6
HpaII CCGG 4 cut(s) 106, 210, 253, 333
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 131
Hpy188III TCNNGA 3 cut(s) 253, 298, 374
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 218
HpyCH4III ACNGT 3 cut(s) 66, 93, 137
HpyCH4IV ACGT 1 cut(s) 187
HpyCH4V TGCA 2 cut(s) 12, 172
HpyF3I CTNAG 1 cut(s) 245
HpySE526I ACGT 1 cut(s) 187
Hsp92II CATG 1 cut(s) 266
HspAI GCGC 1 cut(s) 192
Kpn2I TCCGGA 1 cut(s) 252
Kzo9I GATC 2 cut(s) 126, 306
LpnPI CCDG 8 cut(s) 97, 119, 131, 158, 223, 266, 346, 387
MaeII ACGT 1 cut(s) 187
MalI GATC 2 cut(s) 128, 308
MboI GATC 2 cut(s) 126, 306
MboII GAAGA 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 5 cut(s) 144, 277, 313, 316, 355
MroI TCCGGA 1 cut(s) 252
MseI TTAA 1 cut(s) 403
MspI CCGG 4 cut(s) 106, 210, 253, 333
MspR9I CCNGG 2 cut(s) 146, 210
MvaI CCWGG 1 cut(s) 146
NciI CCSGG 1 cut(s) 210
NdeI CATATG 1 cut(s) 366
NdeII GATC 2 cut(s) 126, 306
NlaIII CATG 1 cut(s) 266
NmeAIII GCCGAG 1 cut(s) 307
NsbI TGCGCA 1 cut(s) 193
PkrI GCNGC 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PstNI CAGNNNCTG 1 cut(s) 135
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
SaqAI TTAA 1 cut(s) 403
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 2 cut(s) 126, 306
ScrFI CCNGG 2 cut(s) 146, 210
SetI ASST 3 cut(s) 147, 190, 327
SsiI CCGC 2 cut(s) 122, 292
StyD4I CCNGG 2 cut(s) 144, 208
TaaI ACNGT 3 cut(s) 66, 93, 137
TaiI ACGT 1 cut(s) 190
TauI GCSGC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 403
Tru9I TTAA 1 cut(s) 403
TscAI CASTG 1 cut(s) 96
TspDTI ATGAA 4 cut(s) 42, 176, 327, 404
TspRI CASTG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.