Belongs to the DEAD box helicase family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PX | PF00787 | 84 - 159 | 4.7e-14 | PX domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 577 |
| AccB1I | GGYRCC | 1 cut(s) | 1049 |
| AccI | GTMKAC | 1 cut(s) | 2016 |
| AciI | CCGC | 4 cut(s) | 50, 116, 361, 2044 |
| AclWI | GGATC | 3 cut(s) | 116, 1094, 1161 |
| AcoI | YGGCCR | 1 cut(s) | 113 |
| AcsI | RAATTY | 4 cut(s) | 187, 535, 1033, 1546 |
| AcuI | CTGAAG | 8 cut(s) | 308, 527, 1107, 1325, 1691, 1766, 1830, 1839 |
| AfaI | GTAC | 1 cut(s) | 1108 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 90, 131, 310, 350, 653, 1811 |
| AflIII | ACRYGT | 2 cut(s) | 832, 1455 |
| AgsI | TTSAA | 8 cut(s) | 476, 888, 1038, 1083, 1310, 1361, 1432, 1493 |
| AhlI | ACTAGT | 1 cut(s) | 1201 |
| AjiI | CACGTC | 1 cut(s) | 1458 |
| AjnI | CCWGG | 3 cut(s) | 161, 410, 636 |
| Alw21I | GWGCWC | 1 cut(s) | 401 |
| Alw26I | GTCTC | 3 cut(s) | 4, 620, 823 |
| AlwI | GGATC | 3 cut(s) | 116, 1094, 1161 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1733 |
| Ama87I | CYCGRG | 1 cut(s) | 1737 |
| AoxI | GGCC | 3 cut(s) | 113, 408, 802 |
| ApeKI | GCWGC | 7 cut(s) | 4, 52, 424, 488, 1128, 1192, 1537 |
| ApoI | RAATTY | 4 cut(s) | 187, 535, 1033, 1546 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 804, 874, 1338 |
| AspS9I | GGNCC | 2 cut(s) | 495, 856 |
| AsuHPI | GGTGA | 6 cut(s) | 142, 225, 1055, 1826, 1964, 2065 |
| AvaI | CYCGRG | 1 cut(s) | 1737 |
| AvaII | GGWCC | 2 cut(s) | 495, 856 |
| BanI | GGYRCC | 1 cut(s) | 1049 |
| Bbv12I | GWGCWC | 1 cut(s) | 401 |
| BbvI | GCAGC | 7 cut(s) | 16, 39, 411, 500, 1140, 1204, 1549 |
| BccI | CCATC | 4 cut(s) | 32, 129, 564, 1040 |
| BciT130I | CCWGG | 3 cut(s) | 163, 412, 638 |
| BcoDI | GTCTC | 3 cut(s) | 4, 620, 823 |
| BcuI | ACTAGT | 1 cut(s) | 1201 |
| BfaI | CTAG | 8 cut(s) | 492, 653, 788, 893, 1202, 1317, 1571, 2131 |
| BfmI | CTRYAG | 2 cut(s) | 208, 486 |
| BfuAI | ACCTGC | 1 cut(s) | 577 |
| BglII | AGATCT | 3 cut(s) | 688, 706, 1228 |
| BisI | GCNGC | 9 cut(s) | 5, 50, 53, 116, 425, 489, 1129, 1193, 1538 |
| BlsI | GCNGC | 9 cut(s) | 6, 51, 54, 117, 426, 490, 1130, 1194, 1539 |
| Bme1390I | CCNGG | 3 cut(s) | 163, 412, 638 |
| Bme18I | GGWCC | 2 cut(s) | 495, 856 |
| BmeT110I | CYCGRG | 1 cut(s) | 1737 |
| BmgBI | CACGTC | 1 cut(s) | 1458 |
| BmgT120I | GGNCC | 2 cut(s) | 495, 856 |
| BmiI | GGNNCC | 2 cut(s) | 1029, 1051 |
| BmrFI | CCNGG | 3 cut(s) | 163, 412, 638 |
| BmrI | ACTGGG | 1 cut(s) | 686 |
| BmsI | GCATC | 2 cut(s) | 473, 1998 |
| BmuI | ACTGGG | 1 cut(s) | 686 |
| BoxI | GACNNNNGTC | 1 cut(s) | 513 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 64, 96 |
| BpuEI | CTTGAG | 2 cut(s) | 1119, 1562 |
| Bsa29I | ATCGAT | 1 cut(s) | 1841 |
| BsaBI | GATNNNNATC | 1 cut(s) | 705 |
| BsaJI | CCNNGG | 4 cut(s) | 162, 348, 637, 647 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 130, 160 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 90, 131, 310, 350, 653, 1811 |
| Bse1I | ACTGG | 3 cut(s) | 681, 801, 2092 |
| Bse8I | GATNNNNATC | 1 cut(s) | 705 |
| BseBI | CCWGG | 3 cut(s) | 163, 412, 638 |
| BseCI | ATCGAT | 1 cut(s) | 1841 |
| BseDI | CCNNGG | 4 cut(s) | 162, 348, 637, 647 |
| BseGI | GGATG | 8 cut(s) | 140, 369, 420, 464, 556, 667, 706, 2088 |
| BseJI | GATNNNNATC | 1 cut(s) | 705 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 90, 131, 310, 350, 653, 1811 |
| BseMII | CTCAG | 5 cut(s) | 935, 978, 1660, 1680, 2019 |
| BseNI | ACTGG | 3 cut(s) | 681, 801, 2092 |
| BseRI | GAGGAG | 2 cut(s) | 69, 1729 |
| BseXI | GCAGC | 7 cut(s) | 16, 39, 411, 500, 1140, 1204, 1549 |
| BshFI | GGCC | 3 cut(s) | 115, 410, 804 |
| BshNI | GGYRCC | 1 cut(s) | 1049 |
| BshVI | ATCGAT | 1 cut(s) | 1841 |
| BsiHKAI | GWGCWC | 1 cut(s) | 401 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1737 |
| BslFI | GGGAC | 6 cut(s) | 55, 116, 237, 366, 777, 2096 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 90, 131, 310, 350, 653, 1811 |
| BsmAI | GTCTC | 3 cut(s) | 4, 620, 823 |
| BsmBI | CGTCTC | 1 cut(s) | 4 |
| BsmFI | GGGAC | 6 cut(s) | 55, 116, 237, 366, 777, 2096 |
| BsmI | GAATGC | 2 cut(s) | 1763, 2038 |
| BsnI | GGCC | 3 cut(s) | 115, 410, 804 |
| BsoBI | CYCGRG | 1 cut(s) | 1737 |
| Bsp1286I | GDGCHC | 1 cut(s) | 401 |
| Bsp143I | GATC | 6 cut(s) | 121, 688, 706, 1086, 1153, 1228 |
| BspACI | CCGC | 4 cut(s) | 50, 116, 361, 2044 |
| BspANI | GGCC | 3 cut(s) | 115, 410, 804 |
| BspCNI | CTCAG | 5 cut(s) | 934, 977, 1659, 1681, 2020 |
| BspDI | ATCGAT | 1 cut(s) | 1841 |
| BspLI | GGNNCC | 2 cut(s) | 1029, 1051 |
| BspMAI | CTGCAG | 1 cut(s) | 490 |
| BspMI | ACCTGC | 1 cut(s) | 577 |
| BspPI | GGATC | 3 cut(s) | 116, 1094, 1161 |
| BspQI | GCTCTTC | 1 cut(s) | 1560 |
| BspT107I | GGYRCC | 1 cut(s) | 1049 |
| BsrI | ACTGG | 3 cut(s) | 681, 801, 2092 |
| BssECI | CCNNGG | 4 cut(s) | 162, 348, 637, 647 |
| BssMI | GATC | 6 cut(s) | 121, 688, 706, 1086, 1153, 1228 |
| BssT1I | CCWWGG | 2 cut(s) | 348, 647 |
| Bst2UI | CCWGG | 3 cut(s) | 163, 412, 638 |
| Bst4CI | ACNGT | 3 cut(s) | 109, 524, 768 |
| Bst6I | CTCTTC | 4 cut(s) | 362, 381, 1319, 1560 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1733 |
| BstC8I | GCNNGC | 5 cut(s) | 955, 959, 1347, 2038, 2042 |
| BstDEI | CTNAG | 9 cut(s) | 266, 921, 964, 998, 1530, 1646, 1658, 1689, 2028 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 129, 308, 1809 |
| BstF5I | GGATG | 8 cut(s) | 140, 369, 420, 464, 556, 667, 706, 2088 |
| BstKTI | GATC | 6 cut(s) | 124, 691, 709, 1089, 1156, 1231 |
| BstMAI | GTCTC | 3 cut(s) | 4, 620, 823 |
| BstMBI | GATC | 6 cut(s) | 121, 688, 706, 1086, 1153, 1228 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1733 |
| BstNI | CCWGG | 3 cut(s) | 163, 412, 638 |
| BstNSI | RCATGY | 2 cut(s) | 836, 1727 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 513 |
| BstSCI | CCNGG | 3 cut(s) | 161, 410, 636 |
| BstSFI | CTRYAG | 2 cut(s) | 208, 486 |
| BstV1I | GCAGC | 7 cut(s) | 16, 39, 411, 500, 1140, 1204, 1549 |
| BstX2I | RGATCY | 3 cut(s) | 688, 706, 1228 |
| BstYI | RGATCY | 3 cut(s) | 688, 706, 1228 |
| Bsu15I | ATCGAT | 1 cut(s) | 1841 |
| BsuRI | GGCC | 3 cut(s) | 115, 410, 804 |
| BsuTUI | ATCGAT | 1 cut(s) | 1841 |
| BtrI | CACGTC | 1 cut(s) | 1458 |
| BtsCI | GGATG | 8 cut(s) | 140, 369, 420, 464, 556, 667, 706, 2088 |
| BtsI | GCAGTG | 2 cut(s) | 465, 1391 |
| BtsIMutI | CAGTG | 3 cut(s) | 465, 1391, 2099 |
| BveI | ACCTGC | 1 cut(s) | 577 |
| Cac8I | GCNNGC | 5 cut(s) | 955, 959, 1347, 2038, 2042 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1733 |
| Cfr13I | GGNCC | 2 cut(s) | 495, 856 |
| ClaI | ATCGAT | 1 cut(s) | 1841 |
| CseI | GACGC | 1 cut(s) | 1148 |
| Csp6I | GTAC | 1 cut(s) | 1107 |
| CviQI | GTAC | 1 cut(s) | 1107 |
| DdeI | CTNAG | 9 cut(s) | 266, 921, 964, 998, 1530, 1646, 1658, 1689, 2028 |
| DpnI | GATC | 6 cut(s) | 123, 690, 708, 1088, 1155, 1230 |
| DpnII | GATC | 6 cut(s) | 121, 688, 706, 1086, 1153, 1228 |
| EaeI | YGGCCR | 1 cut(s) | 113 |
| Eam1104I | CTCTTC | 4 cut(s) | 362, 381, 1319, 1560 |
| EarI | CTCTTC | 4 cut(s) | 362, 381, 1319, 1560 |
| Eco130I | CCWWGG | 2 cut(s) | 348, 647 |
| Eco147I | AGGCCT | 2 cut(s) | 410, 804 |
| Eco47I | GGWCC | 2 cut(s) | 495, 856 |
| Eco57I | CTGAAG | 8 cut(s) | 308, 527, 1107, 1325, 1691, 1766, 1830, 1839 |
| Eco88I | CYCGRG | 1 cut(s) | 1737 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 129, 308, 1809 |
| EcoO109I | RGGNCCY | 2 cut(s) | 495, 856 |
| EcoRI | GAATTC | 1 cut(s) | 535 |
| EcoRII | CCWGG | 3 cut(s) | 161, 410, 636 |
| EcoT14I | CCWWGG | 2 cut(s) | 348, 647 |
| EcoT22I | ATGCAT | 1 cut(s) | 825 |
| ErhI | CCWWGG | 2 cut(s) | 348, 647 |
| Esp3I | CGTCTC | 1 cut(s) | 4 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 385, 417, 1128, 1160, 1290, 1322 |
| FaqI | GGGAC | 6 cut(s) | 55, 116, 237, 366, 777, 2096 |
| FblI | GTMKAC | 1 cut(s) | 2016 |
| Fnu4HI | GCNGC | 9 cut(s) | 5, 50, 53, 116, 425, 489, 1129, 1193, 1538 |
| FokI | GGATG | 8 cut(s) | 147, 376, 427, 451, 543, 674, 713, 2075 |
| Fsp4HI | GCNGC | 9 cut(s) | 5, 50, 53, 116, 425, 489, 1129, 1193, 1538 |
| FspBI | CTAG | 8 cut(s) | 492, 653, 788, 893, 1202, 1317, 1571, 2131 |
| GluI | GCNGC | 9 cut(s) | 5, 50, 53, 116, 425, 489, 1129, 1193, 1538 |
| HaeIII | GGCC | 3 cut(s) | 115, 410, 804 |
| HgaI | GACGC | 1 cut(s) | 1148 |
| HincII | GTYRAC | 3 cut(s) | 518, 1185, 1866 |
| HindII | GTYRAC | 3 cut(s) | 518, 1185, 1866 |
| HindIII | AAGCTT | 1 cut(s) | 728 |
| HinfI | GANTC | 8 cut(s) | 16, 73, 370, 482, 1481, 1523, 1685, 1765 |
| HphI | GGTGA | 6 cut(s) | 142, 225, 1055, 1826, 1964, 2065 |
| Hpy166II | GTNNAC | 7 cut(s) | 518, 1185, 1374, 1866, 2017, 2056, 2086 |
| Hpy188III | TCNNGA | 8 cut(s) | 183, 374, 447, 473, 1250, 1493, 1739, 1784 |
| Hpy8I | GTNNAC | 7 cut(s) | 518, 1185, 1374, 1866, 2017, 2056, 2086 |
| Hpy99I | CGWCG | 1 cut(s) | 1410 |
| HpyCH4III | ACNGT | 3 cut(s) | 109, 524, 768 |
| HpyCH4IV | ACGT | 2 cut(s) | 1457, 1947 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1733 |
| HpyF3I | CTNAG | 9 cut(s) | 266, 921, 964, 998, 1530, 1646, 1658, 1689, 2028 |
| HpySE526I | ACGT | 2 cut(s) | 1457, 1947 |
| Kzo9I | GATC | 6 cut(s) | 121, 688, 706, 1086, 1153, 1228 |
| LguI | GCTCTTC | 1 cut(s) | 1560 |
| LmnI | GCTCC | 2 cut(s) | 1534, 1716 |
| Lsp1109I | GCAGC | 7 cut(s) | 16, 39, 411, 500, 1140, 1204, 1549 |
| LweI | GCATC | 2 cut(s) | 473, 1998 |
| MaeI | CTAG | 8 cut(s) | 492, 653, 788, 893, 1202, 1317, 1571, 2131 |
| MaeII | ACGT | 2 cut(s) | 1457, 1947 |
| MaeIII | GTNAC | 4 cut(s) | 148, 844, 1204, 1966 |
| MalI | GATC | 6 cut(s) | 123, 690, 708, 1088, 1155, 1230 |
| MboI | GATC | 6 cut(s) | 121, 688, 706, 1086, 1153, 1228 |
| MfeI | CAATTG | 1 cut(s) | 1038 |
| MflI | RGATCY | 3 cut(s) | 688, 706, 1228 |
| MhlI | GDGCHC | 1 cut(s) | 401 |
| MlyI | GAGTC | 3 cut(s) | 25, 82, 379 |
| MmeI | TCCRAC | 3 cut(s) | 363, 1388, 1723 |
| Mph1103I | ATGCAT | 1 cut(s) | 825 |
| MroXI | GAANNNNTTC | 3 cut(s) | 804, 874, 1338 |
| MseI | TTAA | 8 cut(s) | 276, 297, 306, 1244, 1596, 1608, 1617, 1887 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1094 |
| MspA1I | CMGCKG | 1 cut(s) | 52 |
| MspR9I | CCNGG | 3 cut(s) | 163, 412, 638 |
| MunI | CAATTG | 1 cut(s) | 1038 |
| Mva1269I | GAATGC | 2 cut(s) | 1763, 2038 |
| MvaI | CCWGG | 3 cut(s) | 163, 412, 638 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1733 |
| NdeII | GATC | 6 cut(s) | 121, 688, 706, 1086, 1153, 1228 |
| NlaIV | GGNNCC | 2 cut(s) | 1029, 1051 |
| NmuCI | GTSAC | 2 cut(s) | 148, 1204 |
| NsiI | ATGCAT | 1 cut(s) | 825 |
| NspI | RCATGY | 2 cut(s) | 836, 1727 |
| PaeR7I | CTCGAG | 1 cut(s) | 1737 |
| PceI | AGGCCT | 2 cut(s) | 410, 804 |
| PciI | ACATGT | 1 cut(s) | 832 |
| PciSI | GCTCTTC | 1 cut(s) | 1560 |
| PctI | GAATGC | 2 cut(s) | 1763, 2038 |
| PdmI | GAANNNNTTC | 3 cut(s) | 804, 874, 1338 |
| PfeI | GAWTC | 5 cut(s) | 482, 1481, 1523, 1685, 1765 |
| PflFI | GACNNNGTC | 2 cut(s) | 15, 2108 |
| PkrI | GCNGC | 9 cut(s) | 6, 51, 54, 117, 426, 490, 1130, 1194, 1539 |
| PleI | GAGTC | 3 cut(s) | 24, 81, 378 |
| PpsI | GAGTC | 3 cut(s) | 24, 81, 378 |
| PpuMI | RGGWCCY | 2 cut(s) | 495, 856 |
| PscI | ACATGT | 1 cut(s) | 832 |
| PshAI | GACNNNNGTC | 1 cut(s) | 513 |
| Psp5II | RGGWCCY | 2 cut(s) | 495, 856 |
| Psp6I | CCWGG | 3 cut(s) | 161, 410, 636 |
| PspGI | CCWGG | 3 cut(s) | 161, 410, 636 |
| PspN4I | GGNNCC | 2 cut(s) | 1029, 1051 |
| PspPI | GGNCC | 2 cut(s) | 495, 856 |
| PspPPI | RGGWCCY | 2 cut(s) | 495, 856 |
| PstI | CTGCAG | 1 cut(s) | 490 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1733 |
| PsuI | RGATCY | 3 cut(s) | 688, 706, 1228 |
| PsyI | GACNNNGTC | 2 cut(s) | 15, 2108 |
| RsaI | GTAC | 1 cut(s) | 1108 |
| RsaNI | GTAC | 1 cut(s) | 1107 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1094 |
| SapI | GCTCTTC | 1 cut(s) | 1560 |
| SaqAI | TTAA | 8 cut(s) | 276, 297, 306, 1244, 1596, 1608, 1617, 1887 |
| SatI | GCNGC | 9 cut(s) | 5, 50, 53, 116, 425, 489, 1129, 1193, 1538 |
| Sau3AI | GATC | 6 cut(s) | 121, 688, 706, 1086, 1153, 1228 |
| Sau96I | GGNCC | 2 cut(s) | 495, 856 |
| SchI | GAGTC | 3 cut(s) | 25, 82, 379 |
| ScrFI | CCNGG | 3 cut(s) | 163, 412, 638 |
| SduI | GDGCHC | 1 cut(s) | 401 |
| SfaNI | GCATC | 2 cut(s) | 473, 1998 |
| SfcI | CTRYAG | 2 cut(s) | 208, 486 |
| Sfr274I | CTCGAG | 1 cut(s) | 1737 |
| SinI | GGWCC | 2 cut(s) | 495, 856 |
| SlaI | CTCGAG | 1 cut(s) | 1737 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1094 |
| SmlI | CTYRAG | 3 cut(s) | 1134, 1541, 1737 |
| SmoI | CTYRAG | 3 cut(s) | 1134, 1541, 1737 |
| SpeI | ACTAGT | 1 cut(s) | 1201 |
| SseBI | AGGCCT | 2 cut(s) | 410, 804 |
| SsiI | CCGC | 4 cut(s) | 50, 116, 361, 2044 |
| SspI | AATATT | 1 cut(s) | 754 |
| SspMI | CTAG | 8 cut(s) | 492, 653, 788, 893, 1202, 1317, 1571, 2131 |
| StuI | AGGCCT | 2 cut(s) | 410, 804 |
| StyD4I | CCNGG | 3 cut(s) | 161, 410, 636 |
| StyI | CCWWGG | 2 cut(s) | 348, 647 |
| TaaI | ACNGT | 3 cut(s) | 109, 524, 768 |
| TaiI | ACGT | 2 cut(s) | 1460, 1950 |
| TaqI | TCGA | 4 cut(s) | 684, 1056, 1738, 1841 |
| TatI | WGTACW | 1 cut(s) | 1106 |
| TauI | GCSGC | 2 cut(s) | 52, 118 |
| TfiI | GAWTC | 5 cut(s) | 482, 1481, 1523, 1685, 1765 |
| Tru1I | TTAA | 8 cut(s) | 276, 297, 306, 1244, 1596, 1608, 1617, 1887 |
| Tru9I | TTAA | 8 cut(s) | 276, 297, 306, 1244, 1596, 1608, 1617, 1887 |
| TscAI | CASTG | 3 cut(s) | 465, 1391, 2099 |
| TseFI | GTSAC | 2 cut(s) | 148, 1204 |
| TseI | GCWGC | 7 cut(s) | 4, 52, 424, 488, 1128, 1192, 1537 |
| Tsp45I | GTSAC | 2 cut(s) | 148, 1204 |
| TspDTI | ATGAA | 7 cut(s) | 380, 717, 984, 1451, 1578, 1816, 1827 |
| TspGWI | ACGGA | 1 cut(s) | 28 |
| TspRI | CASTG | 3 cut(s) | 465, 1391, 2099 |
| Tth111I | GACNNNGTC | 2 cut(s) | 15, 2108 |
| VpaK11BI | GGWCC | 2 cut(s) | 495, 856 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 129, 308, 1809 |
| XapI | RAATTY | 4 cut(s) | 187, 535, 1033, 1546 |
| XceI | RCATGY | 2 cut(s) | 836, 1727 |
| XhoI | CTCGAG | 1 cut(s) | 1737 |
| XmiI | GTMKAC | 1 cut(s) | 2016 |
| XmnI | GAANNNNTTC | 3 cut(s) | 804, 874, 1338 |
| XspI | CTAG | 8 cut(s) | 492, 653, 788, 893, 1202, 1317, 1571, 2131 |
| Zsp2I | ATGCAT | 1 cut(s) | 825 |