Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020003.1

Orthogroup ID

OG0000799

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2354

Gene Structure 2354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020003.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 760 bp

atcgatttcccctctccttctttttcactcttccaacaaatcaacatcatcgtccacagtcatggcggcacctgaaggttcacagtttgatacacgtcagttcgacaccaagatgaatgagttgcttgcaactgatggacaagatttctttacatcatacgatgaagtttacgacagttttgattccatgggcttgcaagagaacctgctgaggggcatttatgcttacggttttgagaaaccctctgctattcagcaaaggggaattgtcccctttattaagggtcttgatgtgattcagcaggctcaatctggaactgggaagacagcgaccttctgttctggtattcttcaacagcttgattatagtttgacggattgccagggcttggttctggcacccactcgagagcttgcccaacaaatagagaaggtcatgagggcccttggagattatcttggtgttaaggtgcatgcatgtgttggtggaactagtgttcgtgaagaccaacgtattctgtcaaatggagttcatgctgttgttggaactccaggtcgtgtttttgatatgctaagaagacagtcacttcgccctgatcatatcaagatgtttgttcttgatgaggctgatgaaatgctctctcggggtttcaaggaccaggtttgtttccaagacaatttcttcatattatttatgtgtttttatgatctacgagtatatcctgcagtatttcatatgcatgaaatgaaaagaatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DEAD Helicase_C WD40

Protein Analysis

252

Amino Acids

28.35

Weight (kDa)

5.51

Isoelectric Point (pI)

52.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54270 AT1G54270 AT1G72730 AT3G13920 AT3G13920 AT3G13920 AT3G13920 AT3G13920
fragaria_vesca	FvH4_1g07920 FvH4_2g31520 FvH4_6g34120 FvH4_6g34120
malus_domestica	MD02G1082700.v1.1 MD08G1065300.v1.1 MD09G1189100.v1.1 MD15G1210800.v1.1 MD17G1172700.v1.1
prunus_persica	Prupe.1G409000_v2.0.a1 Prupe.3G045500_v2.0.a1 Prupe.3G045500_v2.0.a1 Prupe.7G206000_v2.0.a1
pyrus_communis	pycom02g06560 pycom08g05400 pycom09g10600 pycom15g18670 pycom17g17070 pycom17g17080
rosa_chinensis	RchiOBHm_Chr2g0093791 RchiOBHm_Chr2g0144411 RchiOBHm_Chr2g0144421 RchiOBHm_Chr6g0311241
rosa_laevigata	RLG00000010423 RLG00000016437 RLG00000020078 RLG00000020079 RLG00000030391
rosa_multiflora	Rmu_co8454423.1_g000001 Rmu_sc0002126.1_g000004 Rmu_sc0003475.1_g000010 Rmu_sc0012046.1_g000007 Rmu_sc0012116.1_g000001 Rmu_sc0020003.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101330 Rroxscaffold_2G00147800 Rroxscaffold_7G00157830
rosa_rugosa	Rorug02G0040100 Rorug02G0040100 Rorug02G0386200 Rorug02G0386300 Rorug02G0386400 Rorug06G0386800 Rorug06G0386900
rosa_samantha	Rh2AG086300 Rh2AG438600 Rh2AG438700 Rh2BG449000 Rh2CG089000 Rh2CG425700 Rh2CG425800 Rh2DG084700 Rh2DG084800 Rh2DG458700 Rh2DG458800 Rh6BG512000 Rh6CG517800 Rh6DG503900
rosa_wichuraiana	Rw2G035870 Rw2G035880 Rw6G043660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	214
AccB1I	GGYRCC	2 cut(s)	68, 398
AccB7I	CCANNNNNTGG	1 cut(s)	389
AciI	CCGC	1 cut(s)	66
AcsI	RAATTY	1 cut(s)	754
AcuI	CTGAAG	1 cut(s)	94
AfiI	CCNNNNNNNGG	2 cut(s)	212, 389
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	354, 653
AhlI	ACTAGT	1 cut(s)	492
AjiI	CACGTC	1 cut(s)	96
AjnI	CCWGG	3 cut(s)	382, 551, 658
AloI	GAACNNNNNNTCC	2 cut(s)	481, 513
AluBI	AGCT	2 cut(s)	359, 413
AluI	AGCT	2 cut(s)	359, 413
Ama87I	CYCGRG	2 cut(s)	406, 643
AoxI	GGCC	1 cut(s)	442
ApaI	GGGCCC	1 cut(s)	446
ApoI	RAATTY	1 cut(s)	754
ArsI	GACNNNNNNTTYG	2 cut(s)	571, 603
AspS9I	GGNCC	3 cut(s)	442, 443, 656
AvaI	CYCGRG	2 cut(s)	406, 643
AvaII	GGWCC	1 cut(s)	656
BaeGI	GKGCMC	1 cut(s)	446
BanI	GGYRCC	2 cut(s)	68, 398
BanII	GRGCYC	1 cut(s)	446
BbsI	GAAGAC	3 cut(s)	330, 511, 584
BbvCI	CCTCAGC	1 cut(s)	210
BccI	CCATC	1 cut(s)	129
BciT130I	CCWGG	3 cut(s)	384, 553, 660
BclI	TGATCA	1 cut(s)	596
BcuI	ACTAGT	1 cut(s)	492
BfaI	CTAG	1 cut(s)	493
BfmI	CTRYAG	1 cut(s)	724
BfuAI	ACCTGC	1 cut(s)	214
BisI	GCNGC	1 cut(s)	67
BlsI	GCNGC	1 cut(s)	68
Bme1390I	CCNGG	3 cut(s)	384, 553, 660
Bme18I	GGWCC	1 cut(s)	656
BmeT110I	CYCGRG	2 cut(s)	406, 643
BmgBI	CACGTC	1 cut(s)	96
BmgT120I	GGNCC	3 cut(s)	442, 443, 656
BmiI	GGNNCC	3 cut(s)	70, 400, 444
BmrFI	CCNGG	3 cut(s)	384, 553, 660
BmrI	ACTGGG	1 cut(s)	328
BmuI	ACTGGG	1 cut(s)	328
BpiI	GAAGAC	3 cut(s)	330, 511, 584
BplI	GAGNNNNNCTC	2 cut(s)	228, 260
BpmI	CTGGAG	1 cut(s)	535
Bpu10I	CCTNAGC	1 cut(s)	210
Bsa29I	ATCGAT	1 cut(s)	3
BsaJI	CCNNGG	3 cut(s)	187, 383, 446
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 389
Bse1I	ACTGG	1 cut(s)	323
BseBI	CCWGG	3 cut(s)	384, 553, 660
BseCI	ATCGAT	1 cut(s)	3
BseDI	CCNNGG	3 cut(s)	187, 383, 446
BseLI	CCNNNNNNNGG	2 cut(s)	212, 389
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	1 cut(s)	323
BseSI	GKGCMC	1 cut(s)	446
BshFI	GGCC	1 cut(s)	444
BshNI	GGYRCC	2 cut(s)	68, 398
BshVI	ATCGAT	1 cut(s)	3
BsiHKCI	CYCGRG	2 cut(s)	406, 643
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	212, 389
BsmFI	GGGAC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	444
BsoBI	CYCGRG	2 cut(s)	406, 643
Bsp120I	GGGCCC	1 cut(s)	442
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp143I	GATC	2 cut(s)	596, 707
Bsp19I	CCATGG	1 cut(s)	187
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	444
BspCNI	CTCAG	1 cut(s)	202
BspDI	ATCGAT	1 cut(s)	3
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	3 cut(s)	70, 400, 444
BspMAI	CTGCAG	1 cut(s)	728
BspMI	ACCTGC	1 cut(s)	214
BspT107I	GGYRCC	2 cut(s)	68, 398
BsrI	ACTGG	1 cut(s)	323
BssECI	CCNNGG	3 cut(s)	187, 383, 446
BssMI	GATC	2 cut(s)	596, 707
BssT1I	CCWWGG	2 cut(s)	187, 446
Bst2UI	CCWGG	3 cut(s)	384, 553, 660
Bst4CI	ACNGT	5 cut(s)	59, 85, 177, 231, 583
Bst6I	CTCTTC	1 cut(s)	35
BstC8I	GCNNGC	5 cut(s)	127, 195, 304, 415, 475
BstDEI	CTNAG	2 cut(s)	210, 573
BstDSI	CCRYGG	1 cut(s)	187
BstKTI	GATC	2 cut(s)	599, 710
BstMBI	GATC	2 cut(s)	596, 707
BstNI	CCWGG	3 cut(s)	384, 553, 660
BstNSI	RCATGY	2 cut(s)	477, 481
BstSCI	CCNGG	3 cut(s)	382, 551, 658
BstSFI	CTRYAG	1 cut(s)	724
BstSLI	GKGCMC	1 cut(s)	446
BstV2I	GAAGAC	3 cut(s)	330, 511, 584
BstXI	CCANNNNNNTGG	1 cut(s)	62
Bsu15I	ATCGAT	1 cut(s)	3
BsuRI	GGCC	1 cut(s)	444
BsuTUI	ATCGAT	1 cut(s)	3
BtgI	CCRYGG	1 cut(s)	187
BtrI	CACGTC	1 cut(s)	96
BveI	ACCTGC	1 cut(s)	214
Cac8I	GCNNGC	5 cut(s)	127, 195, 304, 415, 475
CciI	TCATGA	1 cut(s)	436
Cfr13I	GGNCC	3 cut(s)	442, 443, 656
ClaI	ATCGAT	1 cut(s)	3
CsiI	ACCWGGT	1 cut(s)	658
CviAII	CATG	7 cut(s)	62, 188, 437, 474, 478, 534, 741
CviJI	RGCY	7 cut(s)	193, 306, 359, 388, 413, 444, 627
CviKI_1	RGCY	7 cut(s)	193, 306, 359, 388, 413, 444, 627
DdeI	CTNAG	2 cut(s)	210, 573
DpnI	GATC	2 cut(s)	598, 709
DpnII	GATC	2 cut(s)	596, 707
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
Eco130I	CCWWGG	2 cut(s)	187, 446
Eco24I	GRGCYC	1 cut(s)	446
Eco47I	GGWCC	1 cut(s)	656
Eco57I	CTGAAG	1 cut(s)	94
Eco88I	CYCGRG	2 cut(s)	406, 643
EcoO109I	RGGNCCY	2 cut(s)	442, 443
EcoRII	CCWGG	3 cut(s)	382, 551, 658
EcoT14I	CCWWGG	2 cut(s)	187, 446
EcoT22I	ATGCAT	2 cut(s)	479, 742
EcoT38I	GRGCYC	1 cut(s)	446
ErhI	CCWWGG	2 cut(s)	187, 446
FaeI	CATG	7 cut(s)	65, 191, 440, 477, 481, 537, 744
FaqI	GGGAC	1 cut(s)	255
FatI	CATG	7 cut(s)	61, 187, 436, 473, 477, 533, 740
FauNDI	CATATG	1 cut(s)	736
FbaI	TGATCA	1 cut(s)	596
Fnu4HI	GCNGC	1 cut(s)	67
FriOI	GRGCYC	1 cut(s)	446
Fsp4HI	GCNGC	1 cut(s)	67
FspBI	CTAG	1 cut(s)	493
GluI	GCNGC	1 cut(s)	67
GsuI	CTGGAG	1 cut(s)	535
HaeIII	GGCC	1 cut(s)	444
Hin1II	CATG	7 cut(s)	65, 191, 440, 477, 481, 537, 744
HinfI	GANTC	2 cut(s)	183, 296
Hpy166II	GTNNAC	3 cut(s)	55, 81, 170
Hpy188III	TCNNGA	7 cut(s)	288, 313, 408, 437, 501, 605, 618
Hpy8I	GTNNAC	3 cut(s)	55, 81, 170
HpyAV	CCTTC	4 cut(s)	27, 69, 344, 425
HpyCH4III	ACNGT	5 cut(s)	59, 85, 177, 231, 583
HpyCH4IV	ACGT	2 cut(s)	95, 512
HpyCH4V	TGCA	6 cut(s)	129, 197, 473, 477, 726, 740
HpyF3I	CTNAG	2 cut(s)	210, 573
HpySE526I	ACGT	2 cut(s)	95, 512
Hsp92II	CATG	7 cut(s)	65, 191, 440, 477, 481, 537, 744
Ksp22I	TGATCA	1 cut(s)	596
Kzo9I	GATC	2 cut(s)	596, 707
MabI	ACCWGGT	1 cut(s)	658
MaeI	CTAG	1 cut(s)	493
MaeII	ACGT	2 cut(s)	95, 512
MaeIII	GTNAC	1 cut(s)	583
MalI	GATC	2 cut(s)	598, 709
MboI	GATC	2 cut(s)	596, 707
MboII	GAAGA	6 cut(s)	22, 335, 342, 516, 589, 674
MhlI	GDGCHC	1 cut(s)	446
MluCI	AATT	3 cut(s)	265, 677, 754
MmeI	TCCRAC	2 cut(s)	58, 524
MnlI	CCTC	5 cut(s)	22, 205, 254, 433, 617
Mph1103I	ATGCAT	2 cut(s)	479, 742
MseI	TTAA	3 cut(s)	280, 466, 758
MslI	CAYNNNNRTG	4 cut(s)	60, 111, 478, 739
MspR9I	CCNGG	3 cut(s)	384, 553, 660
MvaI	CCWGG	3 cut(s)	384, 553, 660
NcoI	CCATGG	1 cut(s)	187
NdeI	CATATG	1 cut(s)	736
NdeII	GATC	2 cut(s)	596, 707
NlaIII	CATG	7 cut(s)	65, 191, 440, 477, 481, 537, 744
NlaIV	GGNNCC	3 cut(s)	70, 400, 444
NmuCI	GTSAC	1 cut(s)	583
NsiI	ATGCAT	2 cut(s)	479, 742
NspI	RCATGY	2 cut(s)	477, 481
PaeI	GCATGC	1 cut(s)	477
PaeR7I	CTCGAG	1 cut(s)	406
PagI	TCATGA	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	183, 296
PflMI	CCANNNNNTGG	1 cut(s)	389
PkrI	GCNGC	1 cut(s)	68
Psp6I	CCWGG	3 cut(s)	382, 551, 658
PspGI	CCWGG	3 cut(s)	382, 551, 658
PspN4I	GGNNCC	3 cut(s)	70, 400, 444
PspOMI	GGGCCC	1 cut(s)	442
PspPI	GGNCC	3 cut(s)	442, 443, 656
PstI	CTGCAG	1 cut(s)	728
RseI	CAYNNNNRTG	4 cut(s)	60, 111, 478, 739
SaqAI	TTAA	3 cut(s)	280, 466, 758
SatI	GCNGC	1 cut(s)	67
Sau3AI	GATC	2 cut(s)	596, 707
Sau96I	GGNCC	3 cut(s)	442, 443, 656
ScrFI	CCNGG	3 cut(s)	384, 553, 660
SduI	GDGCHC	1 cut(s)	446
SexAI	ACCWGGT	1 cut(s)	658
SfcI	CTRYAG	1 cut(s)	724
Sfr274I	CTCGAG	1 cut(s)	406
SinI	GGWCC	1 cut(s)	656
SlaI	CTCGAG	1 cut(s)	406
SmiMI	CAYNNNNRTG	4 cut(s)	60, 111, 478, 739
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
SpeI	ACTAGT	1 cut(s)	492
SphI	GCATGC	1 cut(s)	477
Sse9I	AATT	3 cut(s)	265, 677, 754
SsiI	CCGC	1 cut(s)	66
SspMI	CTAG	1 cut(s)	493
StyD4I	CCNGG	3 cut(s)	382, 551, 658
StyI	CCWWGG	2 cut(s)	187, 446
TaaI	ACNGT	5 cut(s)	59, 85, 177, 231, 583
TaiI	ACGT	2 cut(s)	98, 515
TaqI	TCGA	3 cut(s)	3, 103, 407
TasI	AATT	3 cut(s)	265, 677, 754
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	2 cut(s)	183, 296
Tru1I	TTAA	3 cut(s)	280, 466, 758
Tru9I	TTAA	3 cut(s)	280, 466, 758
TseFI	GTSAC	1 cut(s)	583
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	7 cut(s)	129, 178, 522, 646, 674, 723, 757
TspGWI	ACGGA	1 cut(s)	390
Van91I	CCANNNNNTGG	1 cut(s)	389
VpaK11BI	GGWCC	1 cut(s)	656
XapI	RAATTY	1 cut(s)	754
XceI	RCATGY	2 cut(s)	477, 481
XhoI	CTCGAG	1 cut(s)	406
XspI	CTAG	1 cut(s)	493
Zsp2I	ATGCAT	2 cut(s)	479, 742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.