FvH4_1g07920

Belongs to the DEAD box helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000799
Physical Location & Seq
Reverse (-)
4182095 .. 4184581
2487 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07920.t1

Sequence Viewer

Length: 1236 bp
ATGGCGGCACCTGAAGGATCACAATTTGATACTCATCAGTTTGACAACAGGATGAATGAGCTGCTTACTGCAGAAGGACAAGATTTTTTTACATCATATGATGAAGTTTACGACAGTTTTGATAACATGGGCTTGCAAGAGAACCTGCTCAGGGGAATTTATGCCTATGGTTTTGAGAAACCGTCGGCCATTCAGCAGAGGGGAATTGTCCCCTTCATCAAGGGTCTTGATGTGATTCAGCAGGCCCAGTCTGGAACTGGGAAGACAGCGACTTTCTGTTCTGGTATTCTTCAACAGCTTGATTATAGTTTGTTGGACTGCCAGGCCTTGGTTCTGGCACCCACTCGAGAGCTTGCCCAACAAATAGAGAAAGTCATGAGAGCCCTTGGAGATTATCTTGGTGTGAAGGTGCATGCATGTGTTGGTGGAACTAGTGTTCGCGAGGACCAGCGCATTCTGTCTAGTGGAGTTCATGCTGTTGTTGGAACTCCAGGACGTGTTTTTGACATGCTAAGAAGGCAGTCACTTCGCCCTGATCATATCAAGATGTTTGTTCTTGATGAGGCTGATGAAATGCTCTCTCGGGGTTTCAAGGACCAGATCTATGATATATTCCAGCTTCTCCCACCTAAGATTCAGGTTGGTGTGTTCTCTGCCACAATGCCACCTGAGGCCTTGGAGATCACAAGGAAGTTCATGAACAAACCTGTGAGGATCCTTGTGAAGCGTGATGAACTCACCCTGGAAGGAATTAAGCAGTTTTATGTCAATGTGGACAAGGAGGACTGGAAGCTTGACACTTTGTGTGATCTTTATGAAACCTTGGCCATTACGCAGAGTGTGATTTTTGTTAATACTCGACGCAAGGTTGACTGGTTGACCGACAAAATGAGAAGCAGGGACCATACCGTCTCTGCCACCCATGGAGACATGGACCAGAACAACAGAGACATTATCATGAGGGAATTCCGTTCTGGGTCCTCTCGTGTCTTGATCACCACCGATCTGTTAGCTCGTGGTATTGATGTACAGCAAGTTTCCCTTGTTATTAACTATGATCTCCCTACCCAGCCTGAGAACTACCTCCATAGAATTGGTCGTAGTGGACGATTTGGTAGGAAGGGAGTTGCAATCAACTTTGTTACAACGGATGACCAGAGGATGCTGTTTGATATCCAGAAGTTCTACAATGTGGTGGTGGAGGAGCTGCCTTCAAATGTTGCTGATCTCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
DEAD Helicase_C WD40

Protein Analysis

412

Amino Acids

46.72

Weight (kDa)

5.41

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 63 - 225 4e-43 DEAD/DEAH box helicase
ResIII PF04851 81 - 221 9.3e-07 Type III restriction enzyme, res subunit
Helicase_C PF00271 264 - 372 8.3e-32 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 908
Acc36I ACCTGC 1 cut(s) 153
AccB1I GGYRCC 2 cut(s) 7, 337
AccB7I CCANNNNNTGG 1 cut(s) 328
AccII CGCG 1 cut(s) 441
AciI CCGC 1 cut(s) 5
AclWI GGATC 3 cut(s) 25, 709, 722
AcoI YGGCCR 2 cut(s) 186, 825
AcsI RAATTY 2 cut(s) 156, 965
AcuI CTGAAG 1 cut(s) 33
AdeI CACNNNGTG 1 cut(s) 804
AfaI GTAC 1 cut(s) 1029
AfiI CCNNNNNNNGG 2 cut(s) 151, 328
AflIII ACRYGT 1 cut(s) 496
AgsI TTSAA 3 cut(s) 293, 592, 1215
AhlI ACTAGT 1 cut(s) 431
AjiI CACGTC 1 cut(s) 497
AjnI CCWGG 3 cut(s) 321, 490, 741
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 7 cut(s) 61, 298, 352, 619, 793, 1013, 1207
AluI AGCT 7 cut(s) 61, 298, 352, 619, 793, 1013, 1207
Alw26I GTCTC 3 cut(s) 916, 921, 942
AlwI GGATC 3 cut(s) 25, 709, 722
Ama87I CYCGRG 2 cut(s) 345, 582
AoxI GGCC 5 cut(s) 186, 243, 324, 672, 825
ApeKI GCWGC 2 cut(s) 61, 1207
ApoI RAATTY 2 cut(s) 156, 965
AspLEI GCGC 1 cut(s) 453
AspS9I GGNCC 6 cut(s) 244, 445, 595, 901, 934, 978
AsuHPI GGTGA 2 cut(s) 730, 988
AvaI CYCGRG 2 cut(s) 345, 582
AvaII GGWCC 5 cut(s) 445, 595, 901, 934, 978
AxyI CCTNAGG 1 cut(s) 669
BalI TGGCCA 1 cut(s) 827
BamHI GGATCC 1 cut(s) 714
BanI GGYRCC 2 cut(s) 7, 337
BanII GRGCYC 1 cut(s) 385
BauI CACGAG 2 cut(s) 984, 1014
BbsI GAAGAC 1 cut(s) 269
BbvI GCAGC 2 cut(s) 48, 1194
BcgI CGANNNNNNTGC 2 cut(s) 509, 543
BciT130I CCWGG 3 cut(s) 323, 492, 743
BclI TGATCA 2 cut(s) 535, 993
BcoDI GTCTC 3 cut(s) 916, 921, 942
BcuI ACTAGT 1 cut(s) 431
BfaI CTAG 2 cut(s) 432, 462
BfmI CTRYAG 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 153
BglII AGATCT 1 cut(s) 600
BisI GCNGC 3 cut(s) 6, 62, 1208
BlsI GCNGC 3 cut(s) 7, 63, 1209
Bme1390I CCNGG 3 cut(s) 323, 492, 743
Bme18I GGWCC 5 cut(s) 445, 595, 901, 934, 978
BmeT110I CYCGRG 2 cut(s) 345, 582
BmgBI CACGTC 1 cut(s) 497
BmgT120I GGNCC 6 cut(s) 244, 445, 595, 901, 934, 978
BmiI GGNNCC 5 cut(s) 9, 339, 716, 902, 979
BmrFI CCNGG 3 cut(s) 323, 492, 743
BmrI ACTGGG 2 cut(s) 241, 267
BmsI GCATC 1 cut(s) 1152
BmuI ACTGGG 2 cut(s) 241, 267
BpiI GAAGAC 1 cut(s) 269
BpmI CTGGAG 1 cut(s) 474
Bpu10I CCTNAGC 1 cut(s) 149
BsaBI GATNNNNATC 1 cut(s) 33
BsaJI CCNNGG 6 cut(s) 327, 385, 675, 741, 822, 922
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 328
Bse1I ACTGG 4 cut(s) 247, 262, 791, 878
Bse21I CCTNAGG 1 cut(s) 669
Bse8I GATNNNNATC 1 cut(s) 33
BseBI CCWGG 3 cut(s) 323, 492, 743
BseDI CCNNGG 6 cut(s) 327, 385, 675, 741, 822, 922
BseGI GGATG 3 cut(s) 57, 1156, 1167
BseJI GATNNNNATC 1 cut(s) 33
BseLI CCNNNNNNNGG 2 cut(s) 151, 328
BseMII CTCAG 3 cut(s) 163, 660, 1065
BseNI ACTGG 4 cut(s) 247, 262, 791, 878
BseRI GAGGAG 2 cut(s) 1217, 1220
BseXI GCAGC 2 cut(s) 48, 1194
BseYI CCCAGC 1 cut(s) 1068
Bsh1236I CGCG 1 cut(s) 441
BshFI GGCC 5 cut(s) 188, 245, 326, 674, 827
BshNI GGYRCC 2 cut(s) 7, 337
BsiHKCI CYCGRG 2 cut(s) 345, 582
BslFI GGGAC 2 cut(s) 194, 914
BslI CCNNNNNNNGG 2 cut(s) 151, 328
BsmAI GTCTC 3 cut(s) 916, 921, 942
BsmBI CGTCTC 1 cut(s) 916
BsmFI GGGAC 2 cut(s) 194, 914
BsmI GAATGC 1 cut(s) 453
BsnI GGCC 5 cut(s) 188, 245, 326, 674, 827
BsoBI CYCGRG 2 cut(s) 345, 582
Bsp1286I GDGCHC 1 cut(s) 385
Bsp1407I TGTACA 1 cut(s) 1027
Bsp19I CCATGG 1 cut(s) 922
Bsp68I TCGCGA 1 cut(s) 441
BspACI CCGC 1 cut(s) 5
BspANI GGCC 5 cut(s) 188, 245, 326, 674, 827
BspCNI CTCAG 3 cut(s) 162, 661, 1066
BspFNI CGCG 1 cut(s) 441
BspHI TCATGA 3 cut(s) 375, 696, 957
BspLI GGNNCC 5 cut(s) 9, 339, 716, 902, 979
BspMAI CTGCAG 1 cut(s) 73
BspMI ACCTGC 1 cut(s) 153
BspPI GGATC 3 cut(s) 25, 709, 722
BspT107I GGYRCC 2 cut(s) 7, 337
BsrGI TGTACA 1 cut(s) 1027
BsrI ACTGG 4 cut(s) 247, 262, 791, 878
BssECI CCNNGG 6 cut(s) 327, 385, 675, 741, 822, 922
BssSI CACGAG 2 cut(s) 984, 1014
BssT1I CCWWGG 5 cut(s) 327, 385, 675, 822, 922
Bst2BI CACGAG 2 cut(s) 984, 1014
Bst2UI CCWGG 3 cut(s) 323, 492, 743
Bst4CI ACNGT 3 cut(s) 116, 183, 910
BstAUI TGTACA 1 cut(s) 1027
BstC8I GCNNGC 4 cut(s) 134, 243, 354, 414
BstDEI CTNAG 5 cut(s) 149, 512, 630, 669, 1074
BstDSI CCRYGG 1 cut(s) 922
BstF5I GGATG 3 cut(s) 57, 1156, 1167
BstFNI CGCG 1 cut(s) 441
BstHHI GCGC 1 cut(s) 453
BstMAI GTCTC 3 cut(s) 916, 921, 942
BstMWI GCNNNNNNNGC 1 cut(s) 517
BstNI CCWGG 3 cut(s) 323, 492, 743
BstNSI RCATGY 3 cut(s) 416, 420, 511
BstSCI CCNGG 3 cut(s) 321, 490, 741
BstSFI CTRYAG 1 cut(s) 69
BstUI CGCG 1 cut(s) 441
BstV1I GCAGC 2 cut(s) 48, 1194
BstV2I GAAGAC 1 cut(s) 269
BstX2I RGATCY 2 cut(s) 600, 714
BstXI CCANNNNNNTGG 1 cut(s) 1094
BstYI RGATCY 2 cut(s) 600, 714
Bsu36I CCTNAGG 1 cut(s) 669
BsuRI GGCC 5 cut(s) 188, 245, 326, 674, 827
BtgI CCRYGG 1 cut(s) 922
BtrI CACGTC 1 cut(s) 497
BtsCI GGATG 3 cut(s) 57, 1156, 1167
BtuMI TCGCGA 1 cut(s) 441
BveI ACCTGC 1 cut(s) 153
Cac8I GCNNGC 4 cut(s) 134, 243, 354, 414
CciI TCATGA 3 cut(s) 375, 696, 957
CfoI GCGC 1 cut(s) 453
Cfr13I GGNCC 6 cut(s) 244, 445, 595, 901, 934, 978
CseI GACGC 1 cut(s) 870
Csp6I GTAC 1 cut(s) 1028
CviQI GTAC 1 cut(s) 1028
DdeI CTNAG 5 cut(s) 149, 512, 630, 669, 1074
DraIII CACNNNGTG 1 cut(s) 804
DrdI GACNNNNNNGTC 1 cut(s) 908
DseDI GACNNNNNNGTC 1 cut(s) 908
EaeI YGGCCR 2 cut(s) 186, 825
Eco130I CCWWGG 5 cut(s) 327, 385, 675, 822, 922
Eco147I AGGCCT 2 cut(s) 326, 674
Eco24I GRGCYC 1 cut(s) 385
Eco32I GATATC 1 cut(s) 1174
Eco47I GGWCC 5 cut(s) 445, 595, 901, 934, 978
Eco57I CTGAAG 1 cut(s) 33
Eco81I CCTNAGG 1 cut(s) 669
Eco88I CYCGRG 2 cut(s) 345, 582
EcoO109I RGGNCCY 1 cut(s) 978
EcoRI GAATTC 1 cut(s) 965
EcoRII CCWGG 3 cut(s) 321, 490, 741
EcoRV GATATC 1 cut(s) 1174
EcoT14I CCWWGG 5 cut(s) 327, 385, 675, 822, 922
EcoT22I ATGCAT 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 385
ErhI CCWWGG 5 cut(s) 327, 385, 675, 822, 922
Esp3I CGTCTC 1 cut(s) 916
FalI AAGNNNNNCTT 2 cut(s) 1026, 1058
FaqI GGGAC 2 cut(s) 194, 914
FauNDI CATATG 1 cut(s) 97
FbaI TGATCA 2 cut(s) 535, 993
Fnu4HI GCNGC 3 cut(s) 6, 62, 1208
FokI GGATG 3 cut(s) 64, 1163, 1174
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 3 cut(s) 6, 62, 1208
FspBI CTAG 2 cut(s) 432, 462
GlaI GCGC 1 cut(s) 452
GluI GCNGC 3 cut(s) 6, 62, 1208
GsaI CCCAGC 1 cut(s) 1072
GsuI CTGGAG 1 cut(s) 474
HaeIII GGCC 5 cut(s) 188, 245, 326, 674, 827
HgaI GACGC 1 cut(s) 870
HhaI GCGC 1 cut(s) 453
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HincII GTYRAC 2 cut(s) 871, 879
HindII GTYRAC 2 cut(s) 871, 879
HindIII AAGCTT 1 cut(s) 791
HinfI GANTC 2 cut(s) 235, 634
HphI GGTGA 2 cut(s) 730, 988
Hpy166II GTNNAC 5 cut(s) 109, 775, 871, 879, 1106
Hpy188I TCNGA 1 cut(s) 1235
Hpy8I GTNNAC 5 cut(s) 109, 775, 871, 879, 1106
Hpy99I CGWCG 2 cut(s) 187, 864
HpyAV CCTTC 8 cut(s) 8, 68, 223, 400, 510, 740, 1114, 1221
HpyCH4III ACNGT 3 cut(s) 116, 183, 910
HpyCH4IV ACGT 1 cut(s) 496
HpyCH4V TGCA 5 cut(s) 71, 136, 412, 416, 1130
HpyF10VI GCNNNNNNNGC 1 cut(s) 517
HpyF3I CTNAG 5 cut(s) 149, 512, 630, 669, 1074
HpySE526I ACGT 1 cut(s) 496
HspAI GCGC 1 cut(s) 451
Ksp22I TGATCA 2 cut(s) 535, 993
LmnI GCTCC 1 cut(s) 1204
Lsp1109I GCAGC 2 cut(s) 48, 1194
LweI GCATC 1 cut(s) 1152
MaeI CTAG 2 cut(s) 432, 462
MaeII ACGT 1 cut(s) 496
MaeIII GTNAC 2 cut(s) 522, 1141
MboII GAAGA 2 cut(s) 274, 281
MflI RGATCY 2 cut(s) 600, 714
MhlI GDGCHC 1 cut(s) 385
MlsI TGGCCA 1 cut(s) 827
MluCI AATT 6 cut(s) 23, 156, 204, 750, 965, 1092
MluNI TGGCCA 1 cut(s) 827
MmeI TCCRAC 2 cut(s) 294, 463
Mox20I TGGCCA 1 cut(s) 827
Mph1103I ATGCAT 1 cut(s) 418
MscI TGGCCA 1 cut(s) 827
MseI TTAA 3 cut(s) 753, 852, 1050
MslI CAYNNNNRTG 2 cut(s) 417, 956
Msp20I TGGCCA 1 cut(s) 827
MspR9I CCNGG 3 cut(s) 323, 492, 743
Mva1269I GAATGC 1 cut(s) 453
MvaI CCWGG 3 cut(s) 323, 492, 743
MvnI CGCG 1 cut(s) 441
MwoI GCNNNNNNNGC 1 cut(s) 517
NcoI CCATGG 1 cut(s) 922
NdeI CATATG 1 cut(s) 97
NlaIV GGNNCC 5 cut(s) 9, 339, 716, 902, 979
NmuCI GTSAC 1 cut(s) 522
NruI TCGCGA 1 cut(s) 441
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 3 cut(s) 416, 420, 511
PaeI GCATGC 1 cut(s) 416
PaeR7I CTCGAG 1 cut(s) 345
PagI TCATGA 3 cut(s) 375, 696, 957
PceI AGGCCT 2 cut(s) 326, 674
PcsI WCGNNNNNNNCGW 1 cut(s) 1105
PctI GAATGC 1 cut(s) 453
PfeI GAWTC 2 cut(s) 235, 634
PflMI CCANNNNNTGG 1 cut(s) 328
PfoI TCCNGGA 1 cut(s) 490
PkrI GCNGC 3 cut(s) 7, 63, 1209
PpuMI RGGWCCY 1 cut(s) 978
Psp5II RGGWCCY 1 cut(s) 978
Psp6I CCWGG 3 cut(s) 321, 490, 741
PspFI CCCAGC 1 cut(s) 1068
PspGI CCWGG 3 cut(s) 321, 490, 741
PspN4I GGNNCC 5 cut(s) 9, 339, 716, 902, 979
PspPI GGNCC 6 cut(s) 244, 445, 595, 901, 934, 978
PspPPI RGGWCCY 1 cut(s) 978
PstI CTGCAG 1 cut(s) 73
PsuI RGATCY 2 cut(s) 600, 714
RruI TCGCGA 1 cut(s) 441
RsaI GTAC 1 cut(s) 1029
RsaNI GTAC 1 cut(s) 1028
RseI CAYNNNNRTG 2 cut(s) 417, 956
SaqAI TTAA 3 cut(s) 753, 852, 1050
SatI GCNGC 3 cut(s) 6, 62, 1208
Sau96I GGNCC 6 cut(s) 244, 445, 595, 901, 934, 978
ScrFI CCNGG 3 cut(s) 323, 492, 743
SduI GDGCHC 1 cut(s) 385
SfaNI GCATC 1 cut(s) 1152
SfcI CTRYAG 1 cut(s) 69
Sfr274I CTCGAG 1 cut(s) 345
SinI GGWCC 5 cut(s) 445, 595, 901, 934, 978
SlaI CTCGAG 1 cut(s) 345
SmiMI CAYNNNNRTG 2 cut(s) 417, 956
SmlI CTYRAG 1 cut(s) 345
SmoI CTYRAG 1 cut(s) 345
SpeI ACTAGT 1 cut(s) 431
SphI GCATGC 1 cut(s) 416
Sse9I AATT 6 cut(s) 23, 156, 204, 750, 965, 1092
SseBI AGGCCT 2 cut(s) 326, 674
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 432, 462
StuI AGGCCT 2 cut(s) 326, 674
StyD4I CCNGG 3 cut(s) 321, 490, 741
StyI CCWWGG 5 cut(s) 327, 385, 675, 822, 922
TaaI ACNGT 3 cut(s) 116, 183, 910
TaiI ACGT 1 cut(s) 499
TaqI TCGA 2 cut(s) 346, 859
TaqII GACCGA 1 cut(s) 896
TasI AATT 6 cut(s) 23, 156, 204, 750, 965, 1092
TatI WGTACW 1 cut(s) 1027
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 2 cut(s) 235, 634
Tru1I TTAA 3 cut(s) 753, 852, 1050
Tru9I TTAA 3 cut(s) 753, 852, 1050
TseFI GTSAC 1 cut(s) 522
TseI GCWGC 2 cut(s) 61, 1207
Tsp45I GTSAC 1 cut(s) 522
TspDTI ATGAA 9 cut(s) 68, 117, 205, 461, 585, 685, 713, 747, 831
TspGWI ACGGA 2 cut(s) 959, 1163
Van91I CCANNNNNTGG 1 cut(s) 328
VpaK11BI GGWCC 5 cut(s) 445, 595, 901, 934, 978
XapI RAATTY 2 cut(s) 156, 965
XceI RCATGY 3 cut(s) 416, 420, 511
XcmI CCANNNNNNNNNTGG 1 cut(s) 254
XhoI CTCGAG 1 cut(s) 345
XspI CTAG 2 cut(s) 432, 462
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.