Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000799

Physical Location & Seq

Genomic Coordinates Reverse (-)

27377759 .. 27380182

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G72730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGCAGGAATGGCATCTGATGGAACTCAATATGATCCTCGTCAGTTTGATACTAAGATGAATGCCATTCTCGGCGAGGAAGGAGAGGAAACATTCTACACTAACTATGACGAAGTTTGCGACAGCTTTGATGCAATGGAATTGCAACCAGATCTTCTCAGGGGTATTTATGCTTACGGTTTCGAGAAGCCTTCTGCTATTCAGCAAAGAGGAATTATTCCATTCTGCAAGGGTCTTGATGTGATCCAGCAAGCTCAATCTGGAACTGGAAAGACCGCTACCTTTTGCTCTGGTGTTTTACAGCAGCTCGATATTAGTTTGGTTCAATGCCAAGCTCTTGTTTTGGCACCTACCCGAGAACTTGCCCAGCAAATTGAAAAGGTTATGAGGGCACTTGGTGACTACCTTGGCGTCAAGGCTCAGGCTTGTGTTGGTGGAACAAGTGTTCGTGAGGATCAACGTGTTCTTCAGTCTGGTGTTCATGTTGTTGTTGGAACCCCTGGTCGTGTCTTTGACTTGTTACGCAGACAATCCCTCCGTGCTGATGCAATCAAAATGTTTGTTCTTGATGAAGCTGATGAAATGCTCTCTCGTGGTTTCAAGGATCAGATATACGACATCTTCCAGCTTCTTCCTTCCAAGGTTCAGGTTGGTGTTTTCTCTGCTACAATGCCTCCCGAAGCCCTTGAGATCACAAGGAAGTTCATGAACAAACCAGTCAGGATTCTGGTCAAGCGAGACGAGCTGACTCTTGAAGGTATCAAGCAGTTTTATGTCAATGTAGACAAGGAAGAGTGGAAACTCGAGACACTATGCGATCTCTACGAGACACTGGCCATCACTCAAAGCGTCATCTTTGTGAACACAAGGCGTAAGGTTGATTGGCTAACCGACAAAATGAGAAGCCGTGACCACACTGTTTCAGCTACACACGGAGACATGGACCAGAACACAAGAGACATCATCATGCGCGAATTCCGCTCTGGGTCTTCCCGTGTCCTCATAACCACTGACCTCCTTGCTCGTGGTATCGATGTTCAGCAAGTCTCTCTGGTCATAAACTTTGACCTCCCAACCCAACCGGAGAATTACCTTCATCGTATTGGAAGAAGTGGAAGGTTTGGGAGAAAGGGAGTAGCAATCAATTTCATGACATCGGAGGATGAGAGAATGATGGCTGATATTCAGAGGTTTTACAATGTGGTCGTTGAGGAGTTGCCAAGCAATGTTGCTGATCTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003729 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0005911 GO:0006139 GO:0006412 GO:0006413 GO:0006518 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009505 GO:0009506 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0010468 GO:0010501 GO:0016020 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0034641 GO:0034645 GO:0042221 GO:0042623 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0050789 GO:0050896 GO:0055044 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0071944 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:0140098 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

414

Amino Acids

46.77

Weight (kDa)

5.16

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	66 - 228	2.2e-42	DEAD/DEAH box helicase
ResIII	PF04851	84 - 224	1.4e-06	Type III restriction enzyme, res subunit
Helicase_C	PF00271	267 - 375	1.5e-31	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54270 AT1G54270 AT1G72730 AT3G13920 AT3G13920 AT3G13920 AT3G13920 AT3G13920
fragaria_vesca	FvH4_1g07920 FvH4_2g31520 FvH4_6g34120 FvH4_6g34120
malus_domestica	MD02G1082700.v1.1 MD08G1065300.v1.1 MD09G1189100.v1.1 MD15G1210800.v1.1 MD17G1172700.v1.1
prunus_persica	Prupe.1G409000_v2.0.a1 Prupe.3G045500_v2.0.a1 Prupe.3G045500_v2.0.a1 Prupe.7G206000_v2.0.a1
pyrus_communis	pycom02g06560 pycom08g05400 pycom09g10600 pycom15g18670 pycom17g17070 pycom17g17080
rosa_chinensis	RchiOBHm_Chr2g0093791 RchiOBHm_Chr2g0144411 RchiOBHm_Chr2g0144421 RchiOBHm_Chr6g0311241
rosa_laevigata	RLG00000010423 RLG00000016437 RLG00000020078 RLG00000020079 RLG00000030391
rosa_multiflora	Rmu_co8454423.1_g000001 Rmu_sc0002126.1_g000004 Rmu_sc0003475.1_g000010 Rmu_sc0012046.1_g000007 Rmu_sc0012116.1_g000001 Rmu_sc0020003.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101330 Rroxscaffold_2G00147800 Rroxscaffold_7G00157830
rosa_rugosa	Rorug02G0040100 Rorug02G0040100 Rorug02G0386200 Rorug02G0386300 Rorug02G0386400 Rorug06G0386800 Rorug06G0386900
rosa_samantha	Rh2AG086300 Rh2AG438600 Rh2AG438700 Rh2BG449000 Rh2CG089000 Rh2CG425700 Rh2CG425800 Rh2DG084700 Rh2DG084800 Rh2DG458700 Rh2DG458800 Rh6BG512000 Rh6CG517800 Rh6DG503900
rosa_wichuraiana	Rw2G035870 Rw2G035880 Rw6G043660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	346
AccBSI	CCGCTC	1 cut(s)	981
AccI	GTMKAC	1 cut(s)	783
AccII	CGCG	1 cut(s)	972
AciI	CCGC	2 cut(s)	276, 979
AclWI	GGATC	4 cut(s)	29, 238, 462, 612
AcoI	YGGCCR	1 cut(s)	834
AcsI	RAATTY	1 cut(s)	974
AcuI	CTGAAG	1 cut(s)	452
AcyI	GRCGYC	1 cut(s)	411
AdeI	CACNNNGTG	1 cut(s)	398
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	4 cut(s)	326, 377, 601, 755
AjnI	CCWGG	1 cut(s)	499
AloI	GAACNNNNNNTCC	2 cut(s)	429, 461
AluBI	AGCT	8 cut(s)	126, 254, 307, 335, 575, 628, 745, 926
AluI	AGCT	8 cut(s)	126, 254, 307, 335, 575, 628, 745, 926
Alw26I	GTCTC	6 cut(s)	732, 800, 821, 930, 951, 1051
AlwI	GGATC	4 cut(s)	29, 238, 462, 612
Ama87I	CYCGRG	2 cut(s)	354, 803
AoxI	GGCC	1 cut(s)	834
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	1 cut(s)	974
AspLEI	GCGC	1 cut(s)	972
AspS9I	GGNCC	1 cut(s)	943
AsuHPI	GGTGA	1 cut(s)	410
AvaI	CYCGRG	2 cut(s)	354, 803
AvaII	GGWCC	1 cut(s)	943
BaeGI	GKGCMC	1 cut(s)	394
BalI	TGGCCA	1 cut(s)	836
BanI	GGYRCC	1 cut(s)	346
BauI	CACGAG	2 cut(s)	591, 1023
BbsI	GAAGAC	1 cut(s)	981
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	3 cut(s)	14, 845, 1168
BceAI	ACGGC	1 cut(s)	891
BciT130I	CCWGG	1 cut(s)	501
BcoDI	GTCTC	6 cut(s)	732, 800, 821, 930, 951, 1051
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	1 cut(s)	305
BlsI	GCNGC	1 cut(s)	306
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	1 cut(s)	943
BmeT110I	CYCGRG	2 cut(s)	354, 803
BmgT120I	GGNCC	1 cut(s)	943
BmiI	GGNNCC	2 cut(s)	348, 496
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	3 cut(s)	23, 121, 535
BpiI	GAAGAC	1 cut(s)	981
Bpu10I	CCTNAGC	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	707
Bsa29I	ATCGAT	1 cut(s)	1032
BsaHI	GRCGYC	1 cut(s)	411
BsaJI	CCNNGG	3 cut(s)	406, 499, 639
BsaWI	WCCGGW	1 cut(s)	1081
BsaXI	ACNNNNNCTCC	4 cut(s)	519, 549, 658, 688
Bse1I	ACTGG	3 cut(s)	271, 716, 837
Bse3DI	GCAATG	2 cut(s)	141, 1231
BseBI	CCWGG	1 cut(s)	501
BseCI	ATCGAT	1 cut(s)	1032
BseDI	CCNNGG	3 cut(s)	406, 499, 639
BseGI	GGATG	1 cut(s)	1168
BseMI	GCAATG	2 cut(s)	141, 1231
BseMII	CTCAG	2 cut(s)	172, 434
BseNI	ACTGG	3 cut(s)	271, 716, 837
BseRI	GAGGAG	1 cut(s)	1226
BseSI	GKGCMC	1 cut(s)	394
BseXI	GCAGC	1 cut(s)	316
BseYI	CCCAGC	1 cut(s)	366
Bsh1236I	CGCG	1 cut(s)	972
BshFI	GGCC	1 cut(s)	836
BshNI	GGYRCC	1 cut(s)	346
BshVI	ATCGAT	1 cut(s)	1032
BsiHKCI	CYCGRG	2 cut(s)	354, 803
BsiSI	CCGG	1 cut(s)	1082
BsmAI	GTCTC	6 cut(s)	732, 800, 821, 930, 951, 1051
BsmBI	CGTCTC	1 cut(s)	732
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	836
BsoBI	CYCGRG	2 cut(s)	354, 803
Bsp1286I	GDGCHC	1 cut(s)	394
Bsp143I	GATC	8 cut(s)	34, 151, 243, 454, 604, 690, 817, 1234
BspACI	CCGC	2 cut(s)	276, 979
BspANI	GGCC	1 cut(s)	836
BspCNI	CTCAG	2 cut(s)	171, 433
BspDI	ATCGAT	1 cut(s)	1032
BspFNI	CGCG	1 cut(s)	972
BspHI	TCATGA	2 cut(s)	705, 1149
BspLI	GGNNCC	2 cut(s)	348, 496
BspPI	GGATC	4 cut(s)	29, 238, 462, 612
BspT107I	GGYRCC	1 cut(s)	346
BsrBI	CCGCTC	1 cut(s)	981
BsrDI	GCAATG	2 cut(s)	141, 1231
BsrI	ACTGG	3 cut(s)	271, 716, 837
BssECI	CCNNGG	3 cut(s)	406, 499, 639
BssMI	GATC	8 cut(s)	34, 151, 243, 454, 604, 690, 817, 1234
BssNI	GRCGYC	1 cut(s)	411
BssSI	CACGAG	2 cut(s)	591, 1023
BssT1I	CCWWGG	2 cut(s)	406, 639
Bst2BI	CACGAG	2 cut(s)	591, 1023
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	2 cut(s)	179, 919
Bst6I	CTCTTC	1 cut(s)	786
BstACI	GRCGYC	1 cut(s)	411
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	3 cut(s)	54, 158, 420
BstF5I	GGATG	1 cut(s)	1168
BstFNI	CGCG	1 cut(s)	972
BstHHI	GCGC	1 cut(s)	972
BstKTI	GATC	8 cut(s)	37, 154, 246, 457, 607, 693, 820, 1237
BstMAI	GTCTC	6 cut(s)	732, 800, 821, 930, 951, 1051
BstMBI	GATC	8 cut(s)	34, 151, 243, 454, 604, 690, 817, 1234
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 742, 978
BstNI	CCWGG	1 cut(s)	501
BstSCI	CCNGG	1 cut(s)	499
BstSLI	GKGCMC	1 cut(s)	394
BstUI	CGCG	1 cut(s)	972
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	1 cut(s)	981
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
Bsu15I	ATCGAT	1 cut(s)	1032
BsuRI	GGCC	1 cut(s)	836
BsuTUI	ATCGAT	1 cut(s)	1032
BtsCI	GGATG	1 cut(s)	1168
BtsIMutI	CAGTG	3 cut(s)	830, 915, 1008
Cac8I	GCNNGC	1 cut(s)	252
CciI	TCATGA	2 cut(s)	705, 1149
CfoI	GCGC	1 cut(s)	972
Cfr13I	GGNCC	1 cut(s)	943
ClaI	ATCGAT	1 cut(s)	1032
CseI	GACGC	2 cut(s)	400, 838
CviAII	CATG	5 cut(s)	482, 706, 940, 967, 1150
DdeI	CTNAG	3 cut(s)	54, 158, 420
DpnI	GATC	8 cut(s)	36, 153, 245, 456, 606, 692, 819, 1236
DpnII	GATC	8 cut(s)	34, 151, 243, 454, 604, 690, 817, 1234
DraIII	CACNNNGTG	1 cut(s)	398
EaeI	YGGCCR	1 cut(s)	834
Eam1104I	CTCTTC	1 cut(s)	786
EarI	CTCTTC	1 cut(s)	786
Eco130I	CCWWGG	2 cut(s)	406, 639
Eco47I	GGWCC	1 cut(s)	943
Eco57I	CTGAAG	1 cut(s)	452
Eco88I	CYCGRG	2 cut(s)	354, 803
EcoRI	GAATTC	1 cut(s)	974
EcoRII	CCWGG	1 cut(s)	499
EcoT14I	CCWWGG	2 cut(s)	406, 639
ErhI	CCWWGG	2 cut(s)	406, 639
Esp3I	CGTCTC	1 cut(s)	732
FaeI	CATG	5 cut(s)	485, 709, 943, 970, 1153
FatI	CATG	5 cut(s)	481, 705, 939, 966, 1149
FblI	GTMKAC	1 cut(s)	783
Fnu4HI	GCNGC	1 cut(s)	305
FokI	GGATG	1 cut(s)	1175
Fsp4HI	GCNGC	1 cut(s)	305
GlaI	GCGC	1 cut(s)	971
GluI	GCNGC	1 cut(s)	305
GsaI	CCCAGC	1 cut(s)	370
HaeIII	GGCC	1 cut(s)	836
HapII	CCGG	1 cut(s)	1082
HgaI	GACGC	2 cut(s)	400, 838
HhaI	GCGC	1 cut(s)	972
Hin1I	GRCGYC	1 cut(s)	411
Hin1II	CATG	5 cut(s)	485, 709, 943, 970, 1153
Hin6I	GCGC	1 cut(s)	970
HinP1I	GCGC	1 cut(s)	970
HinfI	GANTC	2 cut(s)	724, 748
HpaII	CCGG	1 cut(s)	1082
HphI	GGTGA	1 cut(s)	410
Hpy166II	GTNNAC	2 cut(s)	784, 862
Hpy188I	TCNGA	5 cut(s)	19, 609, 1159, 1188, 1244
Hpy8I	GTNNAC	2 cut(s)	784, 862
HpyAV	CCTTC	6 cut(s)	74, 201, 645, 749, 1103, 1110
HpyCH4III	ACNGT	2 cut(s)	179, 919
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	4 cut(s)	134, 145, 228, 548
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 742, 978
HpyF3I	CTNAG	3 cut(s)	54, 158, 420
HpySE526I	ACGT	1 cut(s)	460
Hsp92I	GRCGYC	1 cut(s)	411
Hsp92II	CATG	5 cut(s)	485, 709, 943, 970, 1153
HspAI	GCGC	1 cut(s)	970
Kzo9I	GATC	8 cut(s)	34, 151, 243, 454, 604, 690, 817, 1234
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	3 cut(s)	23, 121, 535
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	3 cut(s)	398, 519, 908
MalI	GATC	8 cut(s)	36, 153, 245, 456, 606, 692, 819, 1236
MbiI	CCGCTC	1 cut(s)	981
MboI	GATC	8 cut(s)	34, 151, 243, 454, 604, 690, 817, 1234
MboII	GAAGA	8 cut(s)	146, 458, 613, 623, 803, 981, 1119, 1229
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	394
MlsI	TGGCCA	1 cut(s)	836
MluCI	AATT	6 cut(s)	140, 213, 372, 974, 1087, 1144
MluNI	TGGCCA	1 cut(s)	836
MlyI	GAGTC	1 cut(s)	742
MmeI	TCCRAC	1 cut(s)	472
Mox20I	TGGCCA	1 cut(s)	836
MscI	TGGCCA	1 cut(s)	836
MslI	CAYNNNNRTG	2 cut(s)	857, 965
Msp20I	TGGCCA	1 cut(s)	836
MspI	CCGG	1 cut(s)	1082
MspR9I	CCNGG	1 cut(s)	501
Mva1269I	GAATGC	1 cut(s)	67
MvaI	CCWGG	1 cut(s)	501
MvnI	CGCG	1 cut(s)	972
MwoI	GCNNNNNNNGC	3 cut(s)	11, 742, 978
NdeII	GATC	8 cut(s)	34, 151, 243, 454, 604, 690, 817, 1234
NlaIII	CATG	5 cut(s)	485, 709, 943, 970, 1153
NlaIV	GGNNCC	2 cut(s)	348, 496
NmeAIII	GCCGAG	1 cut(s)	51
NmuCI	GTSAC	2 cut(s)	398, 908
PaeR7I	CTCGAG	1 cut(s)	803
PagI	TCATGA	2 cut(s)	705, 1149
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PctI	GAATGC	1 cut(s)	67
PfeI	GAWTC	1 cut(s)	724
PkrI	GCNGC	1 cut(s)	306
PleI	GAGTC	1 cut(s)	742
PpsI	GAGTC	1 cut(s)	742
Psp6I	CCWGG	1 cut(s)	499
PspFI	CCCAGC	1 cut(s)	366
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	2 cut(s)	348, 496
PspPI	GGNCC	1 cut(s)	943
PsuI	RGATCY	1 cut(s)	151
RseI	CAYNNNNRTG	2 cut(s)	857, 965
SatI	GCNGC	1 cut(s)	305
Sau3AI	GATC	8 cut(s)	34, 151, 243, 454, 604, 690, 817, 1234
Sau96I	GGNCC	1 cut(s)	943
SchI	GAGTC	1 cut(s)	742
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	1 cut(s)	394
SfaNI	GCATC	3 cut(s)	23, 121, 535
Sfr274I	CTCGAG	1 cut(s)	803
SinI	GGWCC	1 cut(s)	943
SlaI	CTCGAG	1 cut(s)	803
SmiMI	CAYNNNNRTG	2 cut(s)	857, 965
SmlI	CTYRAG	2 cut(s)	686, 803
SmoI	CTYRAG	2 cut(s)	686, 803
Sse9I	AATT	6 cut(s)	140, 213, 372, 974, 1087, 1144
SsiI	CCGC	2 cut(s)	276, 979
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	2 cut(s)	406, 639
TaaI	ACNGT	2 cut(s)	179, 919
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	4 cut(s)	183, 309, 804, 1032
TasI	AATT	6 cut(s)	140, 213, 372, 974, 1087, 1144
TfiI	GAWTC	1 cut(s)	724
TscAI	CASTG	3 cut(s)	837, 922, 1015
TseFI	GTSAC	2 cut(s)	398, 908
TseI	GCWGC	1 cut(s)	304
Tsp45I	GTSAC	2 cut(s)	398, 908
TspDTI	ATGAA	8 cut(s)	74, 470, 585, 594, 694, 722, 1085, 1138
TspGWI	ACGGA	2 cut(s)	527, 948
TspRI	CASTG	3 cut(s)	837, 922, 1015
VpaK11BI	GGWCC	1 cut(s)	943
XapI	RAATTY	1 cut(s)	974
XhoI	CTCGAG	1 cut(s)	803
XmiI	GTMKAC	1 cut(s)	783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.