Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000799

Physical Location & Seq

Genomic Coordinates Reverse (-)

64970748 .. 64972446

Gene Structure 1699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG438600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGACAGGTGTTGCTAGTGGAAGTTCACAATTTGATGCTCATCAATATGATGCCAAGATGAATCAGTTACTCTCAACTGATGGACAAGAATTCTTCACCTCATTCGATGAGGTTTATGAGAGTTTCGACTCTATGGGATTGCAAGAAAATCTCCTTAGAGGCCTTTATGCATATGGTTTTGAGAAGCCTTCTGCGATTCAGCAGAGGGGCATTGTTCCTTTCTGCAGAGGTCTTGATGTGATTCAACAGGCTCAATCCAGAACCGGGAAAACAGCAACTTTCTGCTCTGGAATTTTGCAAAACATTGATTATGATCTTGTCCAATGCCAGGCTTTGGCTTTGGTACCAACCAGGGAGTTGGCACGACAGATCGAGAAGGTTATGCGAGCACTTGGTGACTATCTTGGCGTGAAGGTTCATGCTTGCGTTGGTGGGACAAGTGTTCGTGAGGATCAACGAATTCTTCAAGCTGGTGTCCATGTTGTTATTGGAACTCCAGGGCGTGTTCTTGACATGTTGAAGAGGCAATATCTTAGGTCAGATTGCATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCTTGGTTTCAAGGATCAGATCTATGATATTTTCCAGCAGCTGCCATCGAATATTCAGGTGGGGTGTTTTCTGCTACTATGCCATCTGAAGCCCTTGAACTCACAAAGAAGTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006412 GO:0006413 GO:0006518 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019538 GO:0031974 GO:0031981 GO:0034641 GO:0034645 GO:0042623 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0060255 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DEAD DUF4283 Helicase_C

Protein Analysis

234

Amino Acids

26.16

Weight (kDa)

5.58

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	65 - 219	3e-35	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54270 AT1G54270 AT1G72730 AT3G13920 AT3G13920 AT3G13920 AT3G13920 AT3G13920
fragaria_vesca	FvH4_1g07920 FvH4_2g31520 FvH4_6g34120 FvH4_6g34120
malus_domestica	MD02G1082700.v1.1 MD08G1065300.v1.1 MD09G1189100.v1.1 MD15G1210800.v1.1 MD17G1172700.v1.1
prunus_persica	Prupe.1G409000_v2.0.a1 Prupe.3G045500_v2.0.a1 Prupe.3G045500_v2.0.a1 Prupe.7G206000_v2.0.a1
pyrus_communis	pycom02g06560 pycom08g05400 pycom09g10600 pycom15g18670 pycom17g17070 pycom17g17080
rosa_chinensis	RchiOBHm_Chr2g0093791 RchiOBHm_Chr2g0144411 RchiOBHm_Chr2g0144421 RchiOBHm_Chr6g0311241
rosa_laevigata	RLG00000010423 RLG00000016437 RLG00000020078 RLG00000020079 RLG00000030391
rosa_multiflora	Rmu_co8454423.1_g000001 Rmu_sc0002126.1_g000004 Rmu_sc0003475.1_g000010 Rmu_sc0012046.1_g000007 Rmu_sc0012116.1_g000001 Rmu_sc0020003.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101330 Rroxscaffold_2G00147800 Rroxscaffold_7G00157830
rosa_rugosa	Rorug02G0040100 Rorug02G0040100 Rorug02G0386200 Rorug02G0386300 Rorug02G0386400 Rorug06G0386800 Rorug06G0386900
rosa_samantha	Rh2AG086300 Rh2AG438600 Rh2AG438700 Rh2BG449000 Rh2CG089000 Rh2CG425700 Rh2CG425800 Rh2DG084700 Rh2DG084800 Rh2DG458700 Rh2DG458800 Rh6BG512000 Rh6CG517800 Rh6DG503900
rosa_wichuraiana	Rw2G035870 Rw2G035880 Rw6G043660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	343
AccB1I	GGYRCC	1 cut(s)	343
AccB7I	CCANNNNNTGG	1 cut(s)	334
AclWI	GGATC	2 cut(s)	459, 609
AcsI	RAATTY	3 cut(s)	89, 291, 459
AcuI	CTGAAG	1 cut(s)	695
AdeI	CACNNNGTG	1 cut(s)	395
AfaI	GTAC	1 cut(s)	345
AfiI	CCNNNNNNNGG	3 cut(s)	264, 328, 334
AflIII	ACRYGT	1 cut(s)	513
AgsI	TTSAA	5 cut(s)	245, 467, 520, 598, 685
AjnI	CCWGG	3 cut(s)	327, 350, 496
AluBI	AGCT	3 cut(s)	470, 572, 628
AluI	AGCT	3 cut(s)	470, 572, 628
Alw21I	GWGCWC	1 cut(s)	391
AlwI	GGATC	2 cut(s)	459, 609
AlwNI	CAGNNNCTG	1 cut(s)	628
AoxI	GGCC	1 cut(s)	160
ApeKI	GCWGC	2 cut(s)	625, 628
ApoI	RAATTY	3 cut(s)	89, 291, 459
Asp718I	GGTACC	1 cut(s)	343
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	88, 407
BanI	GGYRCC	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	391
BbvI	GCAGC	2 cut(s)	615, 637
BccI	CCATC	3 cut(s)	74, 640, 678
BciT130I	CCWGG	3 cut(s)	329, 352, 498
BcnI	CCSGG	1 cut(s)	265
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	223
BglII	AGATCT	1 cut(s)	606
BisI	GCNGC	2 cut(s)	626, 629
BlsI	GCNGC	2 cut(s)	627, 630
Bme1390I	CCNGG	4 cut(s)	265, 329, 352, 498
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	4 cut(s)	265, 329, 352, 498
BmsI	GCATC	2 cut(s)	25, 40
BpmI	CTGGAG	1 cut(s)	480
BpuMI	CCSGG	1 cut(s)	265
BsaBI	GATNNNNATC	2 cut(s)	39, 312
BsaJI	CCNNGG	2 cut(s)	351, 497
Bsc4I	CCNNNNNNNGG	3 cut(s)	264, 328, 334
Bse8I	GATNNNNATC	2 cut(s)	39, 312
BseBI	CCWGG	3 cut(s)	329, 352, 498
BseDI	CCNNGG	2 cut(s)	351, 497
BseGI	GGATG	1 cut(s)	571
BseJI	GATNNNNATC	2 cut(s)	39, 312
BseLI	CCNNNNNNNGG	3 cut(s)	264, 328, 334
BseXI	GCAGC	2 cut(s)	615, 637
BshFI	GGCC	1 cut(s)	162
BshNI	GGYRCC	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	391
BsiSI	CCGG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	3 cut(s)	264, 328, 334
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	5 cut(s)	313, 369, 451, 601, 606
BspANI	GGCC	1 cut(s)	162
BspLI	GGNNCC	1 cut(s)	345
BspMAI	CTGCAG	1 cut(s)	227
BspPI	GGATC	2 cut(s)	459, 609
BspT107I	GGYRCC	1 cut(s)	343
BssECI	CCNNGG	2 cut(s)	351, 497
BssMI	GATC	5 cut(s)	313, 369, 451, 601, 606
Bst2UI	CCWGG	3 cut(s)	329, 352, 498
Bst6I	CTCTTC	1 cut(s)	515
BstC8I	GCNNGC	2 cut(s)	387, 424
BstDEI	CTNAG	2 cut(s)	155, 533
BstF5I	GGATG	1 cut(s)	571
BstKTI	GATC	5 cut(s)	316, 372, 454, 604, 609
BstMBI	GATC	5 cut(s)	313, 369, 451, 601, 606
BstNI	CCWGG	3 cut(s)	329, 352, 498
BstNSI	RCATGY	1 cut(s)	517
BstSCI	CCNGG	4 cut(s)	263, 327, 350, 496
BstSFI	CTRYAG	1 cut(s)	223
BstV1I	GCAGC	2 cut(s)	615, 637
BstX2I	RGATCY	1 cut(s)	606
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	162
BtsCI	GGATG	1 cut(s)	571
Cac8I	GCNNGC	2 cut(s)	387, 424
CaiI	CAGNNNCTG	1 cut(s)	628
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	3 cut(s)	419, 479, 514
CviJI	RGCY	9 cut(s)	162, 187, 251, 332, 338, 470, 572, 628, 679
CviKI_1	RGCY	9 cut(s)	162, 187, 251, 332, 338, 470, 572, 628, 679
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	2 cut(s)	155, 533
DpnI	GATC	5 cut(s)	315, 371, 453, 603, 608
DpnII	GATC	5 cut(s)	313, 369, 451, 601, 606
DraIII	CACNNNGTG	1 cut(s)	395
Eam1104I	CTCTTC	1 cut(s)	515
EarI	CTCTTC	1 cut(s)	515
Eco147I	AGGCCT	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	695
EcoRI	GAATTC	2 cut(s)	89, 459
EcoRII	CCWGG	3 cut(s)	327, 350, 496
EcoT22I	ATGCAT	1 cut(s)	172
FaeI	CATG	3 cut(s)	422, 482, 517
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	3 cut(s)	418, 478, 513
FauNDI	CATATG	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	626, 629
FokI	GGATG	1 cut(s)	578
Fsp4HI	GCNGC	2 cut(s)	626, 629
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	2 cut(s)	626, 629
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	1 cut(s)	264
Hin1II	CATG	3 cut(s)	422, 482, 517
HinfI	GANTC	4 cut(s)	61, 128, 196, 241
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	2 cut(s)	88, 407
Hpy166II	GTNNAC	1 cut(s)	26
Hpy188I	TCNGA	3 cut(s)	541, 606, 675
Hpy188III	TCNNGA	6 cut(s)	233, 258, 288, 373, 446, 509
Hpy8I	GTNNAC	1 cut(s)	26
HpyAV	CCTTC	3 cut(s)	198, 370, 406
HpyCH4V	TGCA	5 cut(s)	142, 170, 225, 298, 546
HpyF3I	CTNAG	2 cut(s)	155, 533
Hsp92II	CATG	3 cut(s)	422, 482, 517
KpnI	GGTACC	1 cut(s)	347
Kzo9I	GATC	5 cut(s)	313, 369, 451, 601, 606
Lsp1109I	GCAGC	2 cut(s)	615, 637
LweI	GCATC	2 cut(s)	25, 40
MaeI	CTAG	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	66, 395
MalI	GATC	5 cut(s)	315, 371, 453, 603, 608
MboI	GATC	5 cut(s)	313, 369, 451, 601, 606
MboII	GAAGA	3 cut(s)	85, 455, 532
MflI	RGATCY	1 cut(s)	606
MhlI	GDGCHC	1 cut(s)	391
MluCI	AATT	4 cut(s)	29, 89, 291, 459
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	7 cut(s)	103, 109, 152, 198, 221, 442, 516
Mph1103I	ATGCAT	1 cut(s)	172
MseI	TTAA	1 cut(s)	549
MslI	CAYNNNNRTG	2 cut(s)	45, 551
MspA1I	CMGCKG	1 cut(s)	628
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	4 cut(s)	265, 329, 352, 498
MvaI	CCWGG	3 cut(s)	329, 352, 498
NciI	CCSGG	1 cut(s)	265
NdeI	CATATG	1 cut(s)	172
NdeII	GATC	5 cut(s)	313, 369, 451, 601, 606
NlaIII	CATG	3 cut(s)	422, 482, 517
NlaIV	GGNNCC	1 cut(s)	345
NmuCI	GTSAC	1 cut(s)	395
NsiI	ATGCAT	1 cut(s)	172
NspI	RCATGY	1 cut(s)	517
PceI	AGGCCT	1 cut(s)	162
PciI	ACATGT	1 cut(s)	513
PfeI	GAWTC	3 cut(s)	61, 196, 241
PflMI	CCANNNNNTGG	1 cut(s)	334
PkrI	GCNGC	2 cut(s)	627, 630
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PscI	ACATGT	1 cut(s)	513
Psp6I	CCWGG	3 cut(s)	327, 350, 496
PspGI	CCWGG	3 cut(s)	327, 350, 496
PspN4I	GGNNCC	1 cut(s)	345
PstI	CTGCAG	1 cut(s)	227
PstNI	CAGNNNCTG	1 cut(s)	628
PsuI	RGATCY	1 cut(s)	606
PvuII	CAGCTG	1 cut(s)	628
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
RseI	CAYNNNNRTG	2 cut(s)	45, 551
SaqAI	TTAA	1 cut(s)	549
SatI	GCNGC	2 cut(s)	626, 629
Sau3AI	GATC	5 cut(s)	313, 369, 451, 601, 606
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	4 cut(s)	265, 329, 352, 498
SduI	GDGCHC	1 cut(s)	391
SfaNI	GCATC	2 cut(s)	25, 40
SfcI	CTRYAG	1 cut(s)	223
SmiMI	CAYNNNNRTG	2 cut(s)	45, 551
Sse9I	AATT	4 cut(s)	29, 89, 291, 459
SseBI	AGGCCT	1 cut(s)	162
SspI	AATATT	1 cut(s)	640
SspMI	CTAG	1 cut(s)	15
StuI	AGGCCT	1 cut(s)	162
StyD4I	CCNGG	4 cut(s)	263, 327, 350, 496
TaqI	TCGA	4 cut(s)	105, 126, 372, 635
TasI	AATT	4 cut(s)	29, 89, 291, 459
TfiI	GAWTC	3 cut(s)	61, 196, 241
Tru1I	TTAA	1 cut(s)	549
Tru9I	TTAA	1 cut(s)	549
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	2 cut(s)	625, 628
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	4 cut(s)	74, 407, 582, 591
Van91I	CCANNNNNTGG	1 cut(s)	334
XapI	RAATTY	3 cut(s)	89, 291, 459
XceI	RCATGY	1 cut(s)	517
XcmI	CCANNNNNNNNNTGG	1 cut(s)	485
XspI	CTAG	1 cut(s)	15
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.