Prupe.7G206000_v2.0.a1

Belongs to the DEAD box helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000799
Physical Location & Seq
Forward (+)
19016179 .. 19019741
3563 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G206000.1

Sequence Viewer

Length: 1236 bp
ATGGCAGCTCCAGAAGGATCACAATTTGATACTCGTCAGTATGATTCCAAAATGACTGAGCTACTTGCAACTGATGGGCAGGAATTCTTTACATCATATGATGAAGTTTATGATAGTTTTGATTCTATGGGTCTGCAAGAGAATCTTCTGAGGGGCATTTATGCTTACGGTTTTGAAAAACCCTCAGCTATTCAGCAAAGGGGAATTGTTCCATTCTGCAAGGGTCTTGATGTTATTCAACAGGCTCAGTCTGGAACTGGGAAGACAGCGACTTTCTGTTCTGGTATTCTTCAACAGCTTGATTATGGTTTGACAGAATGCCAGGCCTTGGTTCTTGCCCCAACTCGAGAGCTTGCTCAACAGATTGAGAAGGTCATGAGGGCTCTGGGAGACTATCTGGGTGTGAGGGTCCATGCTTGTGTTGGTGGAACCAGTGTTCGTGAAGACCAGCGCATTCTGTCAAACGGGGTTCATGTTGTTGTGGGCACTCCTGGTCGTGTTTTTGACATGCTAAGGAGACAGTCGCTTCGTCCTGATAACATCAAAATGTTTGTTTTGGATGAGGCTGATGAGATGCTTTCCCGAGGTTTCAAGGATCAGATCTATGATATATTTCAGCTTCTGCCATCAAAGATTCAAGTTGGGGTGTTCTCTGCCACAATGCCACCCGAGGCCCTTGAGATCACAAGGAAGTTCATGAACAAACCTGTGAGGATTCTTGTGAAGCGTGATGAACTCACCCTGGAGGGTATAAAGCAATTTTATGTCAATGTTGACAAGGAGGAATGGAAGCTTGAGACTCTTTGTGATCTTTATGAAACTTTGGCCATTACCCAGAGTGTCATTTTCGTCAATACTCGACGCAAGGTTGATTGGTTGACTGACAAAATGCGGAGCCGAGACCATACAGTTTCTGCCACCCATGGAGACATGGACCAGAACACCAGAGACATCATCATGCGGGAGTTCCGTTCTGGGTCATCTCGTGTCTTGATCACCACTGATCTTCTGGCTCGTGGTATTGACGTTCAGCAAGTCTCCCTTGTTATAAACTATGACCTGCCTACCCAGCCAGAGAACTACCTCCACAGAATTGGGCGTAGTGGACGATTCGGCAGGAAGGGTGTTGCCATCAACTTTGTAACAAAGGATGATGAGAGGATGCTGTTTGACATCCAGAAGTTCTATAACGTGCTTGTGGAGGAGCTGCCATCGAATGTTGCTGATCTCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
DEAD Helicase_C WD40

Protein Analysis

412

Amino Acids

46.73

Weight (kDa)

5.38

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1049
Acc36I ACCTGC 1 cut(s) 1068
AccB7I CCANNNNNTGG 1 cut(s) 328
AciI CCGC 2 cut(s) 892, 961
AclWI GGATC 2 cut(s) 25, 603
AcoI YGGCCR 1 cut(s) 825
AcsI RAATTY 1 cut(s) 83
AfiI CCNNNNNNNGG 1 cut(s) 328
AgsI TTSAA 5 cut(s) 176, 239, 293, 592, 638
AjnI CCWGG 3 cut(s) 321, 490, 741
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 8 cut(s) 8, 61, 188, 298, 352, 619, 793, 1207
AluI AGCT 8 cut(s) 8, 61, 188, 298, 352, 619, 793, 1207
Alw26I GTCTC 7 cut(s) 384, 511, 791, 894, 921, 942, 1042
AlwI GGATC 2 cut(s) 25, 603
AlwNI CAGNNNCTG 2 cut(s) 622, 914
Ama87I CYCGRG 3 cut(s) 345, 582, 668
AoxI GGCC 3 cut(s) 324, 672, 825
ApeKI GCWGC 2 cut(s) 5, 1207
ApoI RAATTY 1 cut(s) 83
ArsI GACNNNNNNTTYG 2 cut(s) 510, 542
AspLEI GCGC 1 cut(s) 453
AspS9I GGNCC 3 cut(s) 409, 673, 934
AsuHPI GGTGA 2 cut(s) 730, 988
AvaI CYCGRG 3 cut(s) 345, 582, 668
AvaII GGWCC 2 cut(s) 409, 934
BaeGI GKGCMC 1 cut(s) 488
BalI TGGCCA 1 cut(s) 827
BanII GRGCYC 1 cut(s) 385
BauI CACGAG 2 cut(s) 984, 1014
BbsI GAAGAC 2 cut(s) 269, 450
BbvCI CCTCAGC 1 cut(s) 184
BbvI GCAGC 2 cut(s) 17, 1194
BccI CCATC 4 cut(s) 68, 634, 1139, 1219
BciT130I CCWGG 3 cut(s) 323, 492, 743
BclI TGATCA 1 cut(s) 993
BcoDI GTCTC 7 cut(s) 384, 511, 791, 894, 921, 942, 1042
BfuAI ACCTGC 1 cut(s) 1068
BglII AGATCT 1 cut(s) 600
BisI GCNGC 2 cut(s) 6, 1208
BlsI GCNGC 2 cut(s) 7, 1209
Bme1390I CCNGG 3 cut(s) 323, 492, 743
Bme18I GGWCC 2 cut(s) 409, 934
BmeT110I CYCGRG 3 cut(s) 345, 582, 668
BmgT120I GGNCC 3 cut(s) 409, 673, 934
BmiI GGNNCC 3 cut(s) 410, 430, 896
BmrFI CCNGG 3 cut(s) 323, 492, 743
BmrI ACTGGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 564, 1152
BmuI ACTGGG 1 cut(s) 267
BpiI GAAGAC 2 cut(s) 269, 450
BpmI CTGGAG 1 cut(s) 764
Bpu10I CCTNAGC 2 cut(s) 184, 512
BpuEI CTTGAG 2 cut(s) 698, 815
BsaI GGTCTC 1 cut(s) 894
BsaJI CCNNGG 5 cut(s) 327, 583, 669, 741, 922
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse1I ACTGG 2 cut(s) 262, 432
BseBI CCWGG 3 cut(s) 323, 492, 743
BseDI CCNNGG 5 cut(s) 327, 583, 669, 741, 922
BseGI GGATG 4 cut(s) 565, 1156, 1167, 1173
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMII CTCAG 4 cut(s) 48, 140, 198, 260
BseNI ACTGG 2 cut(s) 262, 432
BseRI GAGGAG 2 cut(s) 1217, 1220
BseSI GKGCMC 1 cut(s) 488
BseXI GCAGC 2 cut(s) 17, 1194
BseYI CCCAGC 1 cut(s) 1068
BshFI GGCC 3 cut(s) 326, 674, 827
BsiHKCI CYCGRG 3 cut(s) 345, 582, 668
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 7 cut(s) 384, 511, 791, 894, 921, 942, 1042
BsmI GAATGC 2 cut(s) 323, 453
BsnI GGCC 3 cut(s) 326, 674, 827
Bso31I GGTCTC 1 cut(s) 894
BsoBI CYCGRG 3 cut(s) 345, 582, 668
Bsp1286I GDGCHC 2 cut(s) 385, 488
Bsp143I GATC 8 cut(s) 17, 595, 600, 681, 808, 993, 1003, 1225
Bsp19I CCATGG 1 cut(s) 922
BspACI CCGC 2 cut(s) 892, 961
BspANI GGCC 3 cut(s) 326, 674, 827
BspCNI CTCAG 4 cut(s) 49, 141, 197, 259
BspHI TCATGA 2 cut(s) 375, 696
BspLI GGNNCC 3 cut(s) 410, 430, 896
BspMI ACCTGC 1 cut(s) 1068
BspPI GGATC 2 cut(s) 25, 603
BspTNI GGTCTC 1 cut(s) 894
BsrI ACTGG 2 cut(s) 262, 432
BssECI CCNNGG 5 cut(s) 327, 583, 669, 741, 922
BssMI GATC 8 cut(s) 17, 595, 600, 681, 808, 993, 1003, 1225
BssSI CACGAG 2 cut(s) 984, 1014
BssT1I CCWWGG 2 cut(s) 327, 922
Bst2BI CACGAG 2 cut(s) 984, 1014
Bst2UI CCWGG 3 cut(s) 323, 492, 743
Bst4CI ACNGT 3 cut(s) 170, 522, 910
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 5 cut(s) 57, 149, 184, 246, 512
BstDSI CCRYGG 1 cut(s) 922
BstF5I GGATG 4 cut(s) 565, 1156, 1167, 1173
BstHHI GCGC 1 cut(s) 453
BstKTI GATC 8 cut(s) 20, 598, 603, 684, 811, 996, 1006, 1228
BstMAI GTCTC 7 cut(s) 384, 511, 791, 894, 921, 942, 1042
BstMBI GATC 8 cut(s) 17, 595, 600, 681, 808, 993, 1003, 1225
BstMWI GCNNNNNNNGC 1 cut(s) 1069
BstNI CCWGG 3 cut(s) 323, 492, 743
BstNSI RCATGY 1 cut(s) 511
BstSCI CCNGG 3 cut(s) 321, 490, 741
BstSLI GKGCMC 1 cut(s) 488
BstV1I GCAGC 2 cut(s) 17, 1194
BstV2I GAAGAC 2 cut(s) 269, 450
BstX2I RGATCY 1 cut(s) 600
BstXI CCANNNNNNTGG 1 cut(s) 1094
BstYI RGATCY 1 cut(s) 600
BsuRI GGCC 3 cut(s) 326, 674, 827
BtgI CCRYGG 1 cut(s) 922
BtsCI GGATG 4 cut(s) 565, 1156, 1167, 1173
BtsIMutI CAGTG 2 cut(s) 439, 999
BveI ACCTGC 1 cut(s) 1068
Cac8I GCNNGC 1 cut(s) 354
CaiI CAGNNNCTG 2 cut(s) 622, 914
CciI TCATGA 2 cut(s) 375, 696
CfoI GCGC 1 cut(s) 453
Cfr13I GGNCC 3 cut(s) 409, 673, 934
CseI GACGC 1 cut(s) 870
CviAII CATG 8 cut(s) 376, 413, 473, 508, 697, 923, 931, 958
DdeI CTNAG 5 cut(s) 57, 149, 184, 246, 512
DpnI GATC 8 cut(s) 19, 597, 602, 683, 810, 995, 1005, 1227
DpnII GATC 8 cut(s) 17, 595, 600, 681, 808, 993, 1003, 1225
EaeI YGGCCR 1 cut(s) 825
Eco130I CCWWGG 2 cut(s) 327, 922
Eco147I AGGCCT 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 385
Eco31I GGTCTC 1 cut(s) 894
Eco47I GGWCC 2 cut(s) 409, 934
Eco88I CYCGRG 3 cut(s) 345, 582, 668
EcoO109I RGGNCCY 1 cut(s) 673
EcoRI GAATTC 1 cut(s) 83
EcoRII CCWGG 3 cut(s) 321, 490, 741
EcoT14I CCWWGG 2 cut(s) 327, 922
EcoT38I GRGCYC 1 cut(s) 385
ErhI CCWWGG 2 cut(s) 327, 922
FaeI CATG 8 cut(s) 379, 416, 476, 511, 700, 926, 934, 961
FalI AAGNNNNNCTT 4 cut(s) 129, 161, 1026, 1058
FatI CATG 8 cut(s) 375, 412, 472, 507, 696, 922, 930, 957
FauI CCCGC 1 cut(s) 954
FauNDI CATATG 1 cut(s) 97
FbaI TGATCA 1 cut(s) 993
Fnu4HI GCNGC 2 cut(s) 6, 1208
FokI GGATG 4 cut(s) 572, 1160, 1163, 1174
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 2 cut(s) 6, 1208
GlaI GCGC 1 cut(s) 452
GluI GCNGC 2 cut(s) 6, 1208
GsaI CCCAGC 1 cut(s) 1072
GsuI CTGGAG 1 cut(s) 764
HaeIII GGCC 3 cut(s) 326, 674, 827
HgaI GACGC 1 cut(s) 870
HhaI GCGC 1 cut(s) 453
Hin1II CATG 8 cut(s) 379, 416, 476, 511, 700, 926, 934, 961
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HincII GTYRAC 2 cut(s) 775, 879
HindII GTYRAC 2 cut(s) 775, 879
HindIII AAGCTT 1 cut(s) 791
HinfI GANTC 7 cut(s) 44, 122, 142, 634, 715, 799, 1110
HphI GGTGA 2 cut(s) 730, 988
Hpy166II GTNNAC 3 cut(s) 775, 879, 1106
Hpy188I TCNGA 3 cut(s) 150, 600, 1235
Hpy8I GTNNAC 3 cut(s) 775, 879, 1106
Hpy99I CGWCG 1 cut(s) 864
HpyAV CCTTC 3 cut(s) 8, 364, 1114
HpyCH4III ACNGT 3 cut(s) 170, 522, 910
HpyCH4IV ACGT 2 cut(s) 1026, 1191
HpyCH4V TGCA 3 cut(s) 68, 136, 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 1069
HpyF3I CTNAG 5 cut(s) 57, 149, 184, 246, 512
HpySE526I ACGT 2 cut(s) 1026, 1191
Hsp92II CATG 8 cut(s) 379, 416, 476, 511, 700, 926, 934, 961
HspAI GCGC 1 cut(s) 451
Ksp22I TGATCA 1 cut(s) 993
Kzo9I GATC 8 cut(s) 17, 595, 600, 681, 808, 993, 1003, 1225
LmnI GCTCC 3 cut(s) 13, 894, 1204
Lsp1109I GCAGC 2 cut(s) 17, 1194
LweI GCATC 2 cut(s) 564, 1152
MaeII ACGT 2 cut(s) 1026, 1191
MaeIII GTNAC 1 cut(s) 1141
MalI GATC 8 cut(s) 19, 597, 602, 683, 810, 995, 1005, 1227
MboI GATC 8 cut(s) 17, 595, 600, 681, 808, 993, 1003, 1225
MboII GAAGA 5 cut(s) 137, 274, 281, 455, 998
MflI RGATCY 1 cut(s) 600
MhlI GDGCHC 2 cut(s) 385, 488
MlsI TGGCCA 1 cut(s) 827
MluCI AATT 5 cut(s) 23, 83, 204, 758, 1092
MluNI TGGCCA 1 cut(s) 827
MlyI GAGTC 1 cut(s) 793
Mox20I TGGCCA 1 cut(s) 827
MscI TGGCCA 1 cut(s) 827
MslI CAYNNNNRTG 3 cut(s) 417, 545, 956
Msp20I TGGCCA 1 cut(s) 827
MspR9I CCNGG 3 cut(s) 323, 492, 743
Mva1269I GAATGC 2 cut(s) 323, 453
MvaI CCWGG 3 cut(s) 323, 492, 743
MwoI GCNNNNNNNGC 1 cut(s) 1069
NcoI CCATGG 1 cut(s) 922
NdeI CATATG 1 cut(s) 97
NdeII GATC 8 cut(s) 17, 595, 600, 681, 808, 993, 1003, 1225
NlaIII CATG 8 cut(s) 379, 416, 476, 511, 700, 926, 934, 961
NlaIV GGNNCC 3 cut(s) 410, 430, 896
NmeAIII GCCGAG 1 cut(s) 923
NspI RCATGY 1 cut(s) 511
PaeR7I CTCGAG 1 cut(s) 345
PagI TCATGA 2 cut(s) 375, 696
PceI AGGCCT 1 cut(s) 326
PctI GAATGC 2 cut(s) 323, 453
PfeI GAWTC 6 cut(s) 44, 122, 142, 634, 715, 1110
PflMI CCANNNNNTGG 1 cut(s) 328
PkrI GCNGC 2 cut(s) 7, 1209
PleI GAGTC 1 cut(s) 793
PpsI GAGTC 1 cut(s) 793
PsiI TTATAA 1 cut(s) 1049
Psp6I CCWGG 3 cut(s) 321, 490, 741
PspFI CCCAGC 1 cut(s) 1068
PspGI CCWGG 3 cut(s) 321, 490, 741
PspN4I GGNNCC 3 cut(s) 410, 430, 896
PspPI GGNCC 3 cut(s) 409, 673, 934
PstNI CAGNNNCTG 2 cut(s) 622, 914
PsuI RGATCY 1 cut(s) 600
RseI CAYNNNNRTG 3 cut(s) 417, 545, 956
SatI GCNGC 2 cut(s) 6, 1208
Sau3AI GATC 8 cut(s) 17, 595, 600, 681, 808, 993, 1003, 1225
Sau96I GGNCC 3 cut(s) 409, 673, 934
SchI GAGTC 1 cut(s) 793
ScrFI CCNGG 3 cut(s) 323, 492, 743
SduI GDGCHC 2 cut(s) 385, 488
SfaNI GCATC 2 cut(s) 564, 1152
Sfr274I CTCGAG 1 cut(s) 345
SinI GGWCC 2 cut(s) 409, 934
SlaI CTCGAG 1 cut(s) 345
SmiMI CAYNNNNRTG 3 cut(s) 417, 545, 956
SmlI CTYRAG 3 cut(s) 345, 677, 794
SmoI CTYRAG 3 cut(s) 345, 677, 794
Sse9I AATT 5 cut(s) 23, 83, 204, 758, 1092
SseBI AGGCCT 1 cut(s) 326
SsiI CCGC 2 cut(s) 892, 961
StuI AGGCCT 1 cut(s) 326
StyD4I CCNGG 3 cut(s) 321, 490, 741
StyI CCWWGG 2 cut(s) 327, 922
TaaI ACNGT 3 cut(s) 170, 522, 910
TaiI ACGT 2 cut(s) 1029, 1194
TaqI TCGA 3 cut(s) 346, 859, 1214
TasI AATT 5 cut(s) 23, 83, 204, 758, 1092
TfiI GAWTC 6 cut(s) 44, 122, 142, 634, 715, 1110
TscAI CASTG 2 cut(s) 439, 1006
TseI GCWGC 2 cut(s) 5, 1207
TspDTI ATGAA 6 cut(s) 117, 461, 685, 713, 747, 831
TspGWI ACGGA 1 cut(s) 959
TspRI CASTG 2 cut(s) 439, 1006
Van91I CCANNNNNTGG 1 cut(s) 328
VpaK11BI GGWCC 2 cut(s) 409, 934
XapI RAATTY 1 cut(s) 83
XceI RCATGY 1 cut(s) 511
XcmI CCANNNNNNNNNTGG 2 cut(s) 419, 1006
XhoI CTCGAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.