Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000799

Physical Location & Seq

Genomic Coordinates Reverse (-)

53234072 .. 53237530

Gene Structure 3459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0386900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTTTGCTTCAGAAAATGGACTGAAAGGAGACCCGAGGCTTCAGGCCATATCTGAAGCCATCAGGGTTGTGCCTCACTTTCCAAAACCAGGAATAATGTTTCAGGACATTACAACATTGTTGCTTGATCACAAGGCCTTCAAGCACACTGTCGACATTTTTGTTGATCGCTACAGAGACATGGACATCTCTGTTGTTGCCGGAGTGGAAGCCAGAGGGTTCATGTTTGGTCCTGCAATTGCCTTAGCTATTGGTGCCAAGTTTGTTCCTTTACGTAAACCCAGAAAGTTGCCGGGAGAAGTAATTTCAGAAGCATACGAACTCGAATATGGAACTGATTGCTTGGAGATGCATGTTGGTGCTGTTCAGCCTGGAGAACGTGCATTGGTTATTGATGATTTAATAGCTACAGGTGGGACATTGTCGGCAGCAATAAGCCTTTTAGAGCGCGTGGGAGCTGAAGTGGTCGAATGTGCATGTGTTATTGGGTTGCCTGAGGTTAAGGGACAGTGCAGGCTTAATGGAAAGCCACTTTATATCCTTGTGGAGCCGCGAGAGCTAGATAACTGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

191

Amino Acids

20.78

Weight (kDa)

5.26

Isoelectric Point (pI)

18.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pribosyltran	PF00156	48 - 163	5.5e-16	Phosphoribosyl transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54270 AT1G54270 AT1G72730 AT3G13920 AT3G13920 AT3G13920 AT3G13920 AT3G13920
fragaria_vesca	FvH4_1g07920 FvH4_2g31520 FvH4_6g34120 FvH4_6g34120
malus_domestica	MD02G1082700.v1.1 MD08G1065300.v1.1 MD09G1189100.v1.1 MD15G1210800.v1.1 MD17G1172700.v1.1
prunus_persica	Prupe.1G409000_v2.0.a1 Prupe.3G045500_v2.0.a1 Prupe.3G045500_v2.0.a1 Prupe.7G206000_v2.0.a1
pyrus_communis	pycom02g06560 pycom08g05400 pycom09g10600 pycom15g18670 pycom17g17070 pycom17g17080
rosa_chinensis	RchiOBHm_Chr2g0093791 RchiOBHm_Chr2g0144411 RchiOBHm_Chr2g0144421 RchiOBHm_Chr6g0311241
rosa_laevigata	RLG00000010423 RLG00000016437 RLG00000020078 RLG00000020079 RLG00000030391
rosa_multiflora	Rmu_co8454423.1_g000001 Rmu_sc0002126.1_g000004 Rmu_sc0003475.1_g000010 Rmu_sc0012046.1_g000007 Rmu_sc0012116.1_g000001 Rmu_sc0020003.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101330 Rroxscaffold_2G00147800 Rroxscaffold_7G00157830
rosa_rugosa	Rorug02G0040100 Rorug02G0040100 Rorug02G0386200 Rorug02G0386300 Rorug02G0386400 Rorug06G0386800 Rorug06G0386900
rosa_samantha	Rh2AG086300 Rh2AG438600 Rh2AG438700 Rh2BG449000 Rh2CG089000 Rh2CG425700 Rh2CG425800 Rh2DG084700 Rh2DG084800 Rh2DG458700 Rh2DG458800 Rh6BG512000 Rh6CG517800 Rh6DG503900
rosa_wichuraiana	Rw2G035870 Rw2G035880 Rw6G043660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	254
AccI	GTMKAC	1 cut(s)	153
AccII	CGCG	2 cut(s)	450, 553
AciI	CCGC	1 cut(s)	551
AcuI	CTGAAG	3 cut(s)	26, 75, 480
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	142
AjnI	CCWGG	2 cut(s)	88, 370
AluBI	AGCT	4 cut(s)	248, 407, 458, 559
AluI	AGCT	4 cut(s)	248, 407, 458, 559
Alw26I	GTCTC	2 cut(s)	24, 171
Ama87I	CYCGRG	1 cut(s)	34
AoxI	GGCC	2 cut(s)	45, 135
ApeKI	GCWGC	1 cut(s)	428
AspLEI	GCGC	1 cut(s)	450
AspS9I	GGNCC	1 cut(s)	230
AsuC2I	CCSGG	1 cut(s)	294
AvaI	CYCGRG	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	230
AxyI	CCTNAGG	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	1 cut(s)	68
BciT130I	CCWGG	2 cut(s)	90, 372
BclI	TGATCA	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	294
BcoDI	GTCTC	2 cut(s)	24, 171
BfaI	CTAG	1 cut(s)	560
BfmI	CTRYAG	2 cut(s)	172, 408
BisI	GCNGC	2 cut(s)	429, 551
BlsI	GCNGC	2 cut(s)	430, 552
Bme1390I	CCNGG	3 cut(s)	90, 294, 372
Bme18I	GGWCC	1 cut(s)	230
BmeT110I	CYCGRG	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	2 cut(s)	256, 549
BmrFI	CCNGG	3 cut(s)	90, 294, 372
BmsI	GCATC	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	244
BpuMI	CCSGG	1 cut(s)	294
BsaAI	YACGTR	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	447, 477
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse21I	CCTNAGG	1 cut(s)	495
BseBI	CCWGG	2 cut(s)	90, 372
BseDI	CCNNGG	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	486
BseXI	GCAGC	1 cut(s)	440
BsgI	GTGCAG	1 cut(s)	532
Bsh1236I	CGCG	2 cut(s)	450, 553
BshFI	GGCC	2 cut(s)	47, 137
BshNI	GGYRCC	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	34
BsiSI	CCGG	2 cut(s)	201, 293
BslFI	GGGAC	2 cut(s)	430, 519
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	24, 171
BsmFI	GGGAC	2 cut(s)	430, 519
BsnI	GGCC	2 cut(s)	47, 137
Bso31I	GGTCTC	1 cut(s)	24
BsoBI	CYCGRG	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	127, 166
BspACI	CCGC	1 cut(s)	551
BspANI	GGCC	2 cut(s)	47, 137
BspCNI	CTCAG	1 cut(s)	487
BspFNI	CGCG	2 cut(s)	450, 553
BspLI	GGNNCC	2 cut(s)	256, 549
BspT107I	GGYRCC	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	2 cut(s)	127, 166
Bst2UI	CCWGG	2 cut(s)	90, 372
Bst4CI	ACNGT	3 cut(s)	151, 510, 569
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	515
BstDEI	CTNAG	2 cut(s)	244, 495
BstFNI	CGCG	2 cut(s)	450, 553
BstHHI	GCGC	1 cut(s)	450
BstKTI	GATC	2 cut(s)	130, 169
BstMAI	GTCTC	2 cut(s)	24, 171
BstMBI	GATC	2 cut(s)	127, 166
BstMWI	GCNNNNNNNGC	2 cut(s)	254, 556
BstNI	CCWGG	2 cut(s)	90, 372
BstNSI	RCATGY	2 cut(s)	356, 480
BstSCI	CCNGG	3 cut(s)	88, 292, 370
BstSFI	CTRYAG	2 cut(s)	172, 408
BstSNI	TACGTA	1 cut(s)	275
BstUI	CGCG	2 cut(s)	450, 553
BstV1I	GCAGC	1 cut(s)	440
Bsu36I	CCTNAGG	1 cut(s)	495
BsuRI	GGCC	2 cut(s)	47, 137
BtsIMutI	CAGTG	2 cut(s)	147, 515
Cac8I	GCNNGC	1 cut(s)	515
CfoI	GCGC	1 cut(s)	450
Cfr13I	GGNCC	1 cut(s)	230
CviAII	CATG	4 cut(s)	181, 223, 353, 477
DdeI	CTNAG	2 cut(s)	244, 495
DpnI	GATC	2 cut(s)	129, 168
DpnII	GATC	2 cut(s)	127, 166
Eco105I	TACGTA	1 cut(s)	275
Eco147I	AGGCCT	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	230
Eco57I	CTGAAG	3 cut(s)	26, 75, 480
Eco81I	CCTNAGG	1 cut(s)	495
Eco88I	CYCGRG	1 cut(s)	34
EcoRII	CCWGG	2 cut(s)	88, 370
EcoT22I	ATGCAT	1 cut(s)	354
FaeI	CATG	4 cut(s)	184, 226, 356, 480
FaiI	YATR	8 cut(s)	50, 182, 224, 316, 330, 354, 478, 537
FaqI	GGGAC	2 cut(s)	430, 519
FatI	CATG	4 cut(s)	180, 222, 352, 476
FbaI	TGATCA	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	429, 551
Fsp4HI	GCNGC	2 cut(s)	429, 551
FspBI	CTAG	1 cut(s)	560
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	2 cut(s)	429, 551
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	47, 137
HapII	CCGG	2 cut(s)	201, 293
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	4 cut(s)	184, 226, 356, 480
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HpaII	CCGG	2 cut(s)	201, 293
Hpy166II	GTNNAC	2 cut(s)	154, 278
Hpy188I	TCNGA	3 cut(s)	13, 55, 310
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	2 cut(s)	154, 278
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	3 cut(s)	151, 510, 569
HpyCH4IV	ACGT	2 cut(s)	274, 379
HpyCH4V	TGCA	5 cut(s)	236, 352, 383, 476, 513
HpyF10VI	GCNNNNNNNGC	2 cut(s)	254, 556
HpyF3I	CTNAG	2 cut(s)	244, 495
HpySE526I	ACGT	2 cut(s)	274, 379
Hsp92II	CATG	4 cut(s)	184, 226, 356, 480
HspAI	GCGC	1 cut(s)	448
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	127, 166
LmnI	GCTCC	2 cut(s)	455, 547
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	1 cut(s)	339
MaeI	CTAG	1 cut(s)	560
MaeII	ACGT	2 cut(s)	274, 379
MalI	GATC	2 cut(s)	129, 168
MboI	GATC	2 cut(s)	127, 166
MfeI	CAATTG	1 cut(s)	237
MluCI	AATT	2 cut(s)	237, 303
MnlI	CCTC	4 cut(s)	30, 84, 209, 490
Mph1103I	ATGCAT	1 cut(s)	354
MseI	TTAA	3 cut(s)	401, 501, 519
MslI	CAYNNNNRTG	1 cut(s)	357
MspI	CCGG	2 cut(s)	201, 293
MspR9I	CCNGG	3 cut(s)	90, 294, 372
MunI	CAATTG	1 cut(s)	237
MvaI	CCWGG	2 cut(s)	90, 372
MvnI	CGCG	2 cut(s)	450, 553
MwoI	GCNNNNNNNGC	2 cut(s)	254, 556
NciI	CCSGG	1 cut(s)	294
NdeII	GATC	2 cut(s)	127, 166
NlaIII	CATG	4 cut(s)	184, 226, 356, 480
NlaIV	GGNNCC	2 cut(s)	256, 549
NsiI	ATGCAT	1 cut(s)	354
NspI	RCATGY	2 cut(s)	356, 480
PceI	AGGCCT	1 cut(s)	137
PflFI	GACNNNGTC	1 cut(s)	421
PkrI	GCNGC	2 cut(s)	430, 552
Ppu21I	YACGTR	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	88, 370
PspGI	CCWGG	2 cut(s)	88, 370
PspN4I	GGNNCC	2 cut(s)	256, 549
PspPI	GGNCC	1 cut(s)	230
PsyI	GACNNNGTC	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	357
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	3 cut(s)	401, 501, 519
SatI	GCNGC	2 cut(s)	429, 551
Sau3AI	GATC	2 cut(s)	127, 166
Sau96I	GGNCC	1 cut(s)	230
ScrFI	CCNGG	3 cut(s)	90, 294, 372
SetI	ASST	8 cut(s)	250, 277, 382, 409, 415, 460, 501, 561
SfaNI	GCATC	1 cut(s)	339
SfcI	CTRYAG	2 cut(s)	172, 408
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	357
SnaBI	TACGTA	1 cut(s)	275
Sse9I	AATT	2 cut(s)	237, 303
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	1 cut(s)	551
SspMI	CTAG	1 cut(s)	560
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	3 cut(s)	88, 292, 370
TaaI	ACNGT	3 cut(s)	151, 510, 569
TaiI	ACGT	2 cut(s)	277, 382
TaqI	TCGA	3 cut(s)	153, 324, 468
TasI	AATT	2 cut(s)	237, 303
TauI	GCSGC	1 cut(s)	553
Tru1I	TTAA	3 cut(s)	401, 501, 519
Tru9I	TTAA	3 cut(s)	401, 501, 519
TscAI	CASTG	2 cut(s)	154, 515
TseI	GCWGC	1 cut(s)	428
TspDTI	ATGAA	1 cut(s)	211
TspRI	CASTG	2 cut(s)	154, 515
Tth111I	GACNNNGTC	1 cut(s)	421
VpaK11BI	GGWCC	1 cut(s)	230
XceI	RCATGY	2 cut(s)	356, 480
XmiI	GTMKAC	1 cut(s)	153
XspI	CTAG	1 cut(s)	560
Zsp2I	ATGCAT	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.