pycom15g18670

Belongs to the DEAD box helicase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000799
Physical Location & Seq
Reverse (-)
13259798 .. 13261782
1985 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g18670.4

Sequence Viewer

Length: 1185 bp
ATGAGTGAATTACTTGCAACTGATGGGCAGGAATTCTTTACATCGTACGATGAAGTTTATGATAGTTTTGATGCTATGGGTCTTCAAGAGAATCTGCTCAGGGGAATCTACGCTTACGGTTTTGAAAAACCCTCGGCTATTCAGCAAAGGGGAATTGTTCCCTTCTGCAAGGGTCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAGACAGCTACTTTCTGTTCCGGTATCCTTCAACAGCTTGATTATAGTTTGACAGAGTGCCAAGCCTTGGTTCTTGCACCCACTCGAGAGCTTGCTCAACAGATTGAGAAGGTTATGAGGGCTCTTGGAGACTATCTAGGTGTAAGGGTGCATGCTTGTGTTGGTGGAACCAGTGTCCGTGAGGACCAACGCATTCTGTCAAATGGAGTGCATGTTGTTGTTGGAACTCCCGGTCGTGTTTTTGACATGCTTAGAAGGCAGTCACTTCGTCCTGATAGCATCAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTCAAGGATCAGATCTACGATATATTCCAGCTTCTTCCACCAAAGATTCAGGTTGGTGTGTTCTCTGCCACAATGCCGCCTGAGGCTCTTGAGATCACAAGGAAGTTTATGAACAAACCTGTGAGGATTCTAGTGAAGCGTGATGAGCTCACCCTGGAAGGTATAAAGCAATTCTATGTCAATGTCGACAAGGAGGAATGGAAGCTTGAGACTCTTTGCGATCTTTATGAGACCTTGGCCATTACCCAGAGTGTCATTTTTGTCAATACTCGACGCAAGGTTGACTGGTTGACTGACAAGATGAGGAGCAGAGACCATACAGTTTCTGCCACCCATGGAGACATGGACCAGAACACCAGAGACATCATCATGCGGGAATTCCGTTCTGGCTCATCTCGTGTGTTGATCACCACTGATCTGTTGGCTCGTGGTATTGACGTGCAGCAAGTCTCCCTTGTTATTAACTATGATCTGCCCACCCAGCCTGAGAACTACCTCCACAGAATTGGTCGTAGTGGACGTTTTGGAAGGAAGGGTGTTGCCATCAACTTCGTAACAAAGGATGATGAGAGGATGCTGTTCGACATCCAGAAGTTCTATAACGTGGTTGTGGAGGAGCTGCCATCGAACGTCGCTGATCTCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
DEAD Helicase_C WD40

Protein Analysis

395

Amino Acids

44.79

Weight (kDa)

5.47

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 277
AccI GTMKAC 1 cut(s) 723
AciI CCGC 2 cut(s) 614, 910
AclWI GGATC 1 cut(s) 552
AcoI YGGCCR 1 cut(s) 774
AcsI RAATTY 2 cut(s) 32, 914
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 4 cut(s) 86, 125, 242, 541
AjiI CACGTC 1 cut(s) 976
AjnI CCWGG 1 cut(s) 690
AjuI GAANNNNNNNTTGG 2 cut(s) 264, 296
AluBI AGCT 7 cut(s) 218, 247, 301, 568, 685, 742, 1156
AluI AGCT 7 cut(s) 218, 247, 301, 568, 685, 742, 1156
Alw21I GWGCWC 1 cut(s) 687
Alw26I GTCTC 7 cut(s) 333, 740, 761, 843, 870, 891, 991
AlwI GGATC 1 cut(s) 552
AlwNI CAGNNNCTG 1 cut(s) 863
Ama87I CYCGRG 1 cut(s) 294
AoxI GGCC 1 cut(s) 774
ApeKI GCWGC 2 cut(s) 979, 1156
ApoI RAATTY 2 cut(s) 32, 914
AspS9I GGNCC 2 cut(s) 394, 883
AsuC2I CCSGG 1 cut(s) 441
AsuHPI GGTGA 2 cut(s) 679, 937
AvaI CYCGRG 1 cut(s) 294
AvaII GGWCC 2 cut(s) 394, 883
AxyI CCTNAGG 1 cut(s) 618
BalI TGGCCA 1 cut(s) 776
BanII GRGCYC 2 cut(s) 334, 687
BauI CACGAG 2 cut(s) 933, 963
BbsI GAAGAC 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 687
BbvI GCAGC 2 cut(s) 991, 1143
BccI CCATC 3 cut(s) 17, 1088, 1168
BcgI CGANNNNNNTGC 2 cut(s) 458, 492
BciT130I CCWGG 1 cut(s) 692
BciVI GTATCC 1 cut(s) 245
BclI TGATCA 1 cut(s) 942
BcnI CCSGG 1 cut(s) 441
BcoDI GTCTC 7 cut(s) 333, 740, 761, 843, 870, 891, 991
BfaI CTAG 2 cut(s) 347, 668
BfuI GTATCC 1 cut(s) 245
BglII AGATCT 1 cut(s) 549
BisI GCNGC 3 cut(s) 614, 980, 1157
BlsI GCNGC 3 cut(s) 615, 981, 1158
Bme1390I CCNGG 2 cut(s) 441, 692
Bme18I GGWCC 2 cut(s) 394, 883
BmeT110I CYCGRG 1 cut(s) 294
BmgBI CACGTC 1 cut(s) 976
BmgT120I GGNCC 2 cut(s) 394, 883
BmiI GGNNCC 1 cut(s) 379
BmrFI CCNGG 2 cut(s) 441, 692
BmsI GCATC 3 cut(s) 61, 498, 1101
BpiI GAAGAC 1 cut(s) 74
Bpu10I CCTNAGC 1 cut(s) 98
BpuEI CTTGAG 2 cut(s) 647, 764
BpuMI CCSGG 1 cut(s) 441
BsaI GGTCTC 2 cut(s) 761, 843
BsaJI CCNNGG 6 cut(s) 132, 276, 532, 690, 771, 871
BsaWI WCCGGW 1 cut(s) 230
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 3 cut(s) 211, 381, 827
Bse21I CCTNAGG 1 cut(s) 618
BseBI CCWGG 1 cut(s) 692
BseDI CCNNGG 6 cut(s) 132, 276, 532, 690, 771, 871
BseGI GGATG 4 cut(s) 514, 1105, 1116, 1122
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 4 cut(s) 112, 209, 609, 1014
BseNI ACTGG 3 cut(s) 211, 381, 827
BseRI GAGGAG 3 cut(s) 856, 1166, 1169
BseXI GCAGC 2 cut(s) 991, 1143
BseYI CCCAGC 1 cut(s) 1017
BsgI GTGCAG 1 cut(s) 998
Bsh1285I CGRYCG 1 cut(s) 445
BshFI GGCC 1 cut(s) 776
BsiEI CGRYCG 1 cut(s) 445
BsiHKAI GWGCWC 1 cut(s) 687
BsiHKCI CYCGRG 1 cut(s) 294
BsiSI CCGG 2 cut(s) 231, 441
BsiWI CGTACG 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 7 cut(s) 333, 740, 761, 843, 870, 891, 991
BsmI GAATGC 1 cut(s) 402
BsnI GGCC 1 cut(s) 776
Bso31I GGTCTC 2 cut(s) 761, 843
BsoBI CYCGRG 1 cut(s) 294
Bsp1286I GDGCHC 2 cut(s) 334, 687
Bsp143I GATC 8 cut(s) 544, 549, 630, 757, 942, 952, 1006, 1174
Bsp19I CCATGG 1 cut(s) 871
BspACI CCGC 2 cut(s) 614, 910
BspANI GGCC 1 cut(s) 776
BspCNI CTCAG 4 cut(s) 111, 208, 610, 1015
BspLI GGNNCC 1 cut(s) 379
BspPI GGATC 1 cut(s) 552
BspTNI GGTCTC 2 cut(s) 761, 843
BsrI ACTGG 3 cut(s) 211, 381, 827
BssECI CCNNGG 6 cut(s) 132, 276, 532, 690, 771, 871
BssMI GATC 8 cut(s) 544, 549, 630, 757, 942, 952, 1006, 1174
BssSI CACGAG 2 cut(s) 933, 963
BssT1I CCWWGG 3 cut(s) 276, 771, 871
Bst2BI CACGAG 2 cut(s) 933, 963
Bst2UI CCWGG 1 cut(s) 692
Bst4CI ACNGT 2 cut(s) 119, 859
BstC8I GCNNGC 3 cut(s) 192, 303, 363
BstDEI CTNAG 5 cut(s) 98, 195, 461, 618, 1023
BstDSI CCRYGG 2 cut(s) 532, 871
BstF5I GGATG 4 cut(s) 514, 1105, 1116, 1122
BstKTI GATC 8 cut(s) 547, 552, 633, 760, 945, 955, 1009, 1177
BstMAI GTCTC 7 cut(s) 333, 740, 761, 843, 870, 891, 991
BstMBI GATC 8 cut(s) 544, 549, 630, 757, 942, 952, 1006, 1174
BstMCI CGRYCG 1 cut(s) 445
BstMWI GCNNNNNNNGC 3 cut(s) 466, 682, 1018
BstNI CCWGG 1 cut(s) 692
BstNSI RCATGY 3 cut(s) 365, 425, 460
BstSCI CCNGG 2 cut(s) 439, 690
BstV1I GCAGC 2 cut(s) 991, 1143
BstV2I GAAGAC 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 549
BstXI CCANNNNNNTGG 1 cut(s) 1043
BstYI RGATCY 1 cut(s) 549
Bsu36I CCTNAGG 1 cut(s) 618
BsuI GTATCC 1 cut(s) 245
BsuRI GGCC 1 cut(s) 776
BtgI CCRYGG 2 cut(s) 532, 871
BtrI CACGTC 1 cut(s) 976
BtsCI GGATG 4 cut(s) 514, 1105, 1116, 1122
BtsIMutI CAGTG 2 cut(s) 388, 948
Cac8I GCNNGC 3 cut(s) 192, 303, 363
CaiI CAGNNNCTG 1 cut(s) 863
Cfr13I GGNCC 2 cut(s) 394, 883
CseI GACGC 1 cut(s) 819
Csp6I GTAC 1 cut(s) 46
CviAII CATG 6 cut(s) 362, 422, 457, 872, 880, 907
CviQI GTAC 1 cut(s) 46
DdeI CTNAG 5 cut(s) 98, 195, 461, 618, 1023
DpnI GATC 8 cut(s) 546, 551, 632, 759, 944, 954, 1008, 1176
DpnII GATC 8 cut(s) 544, 549, 630, 757, 942, 952, 1006, 1174
EaeI YGGCCR 1 cut(s) 774
Ecl136II GAGCTC 1 cut(s) 685
Eco130I CCWWGG 3 cut(s) 276, 771, 871
Eco24I GRGCYC 2 cut(s) 334, 687
Eco31I GGTCTC 2 cut(s) 761, 843
Eco47I GGWCC 2 cut(s) 394, 883
Eco53kI GAGCTC 1 cut(s) 685
Eco81I CCTNAGG 1 cut(s) 618
Eco88I CYCGRG 1 cut(s) 294
EcoICRI GAGCTC 1 cut(s) 685
EcoRI GAATTC 2 cut(s) 32, 914
EcoRII CCWGG 1 cut(s) 690
EcoT14I CCWWGG 3 cut(s) 276, 771, 871
EcoT38I GRGCYC 2 cut(s) 334, 687
ErhI CCWWGG 3 cut(s) 276, 771, 871
FaeI CATG 6 cut(s) 365, 425, 460, 875, 883, 910
FalI AAGNNNNNCTT 2 cut(s) 975, 1007
FatI CATG 6 cut(s) 361, 421, 456, 871, 879, 906
FauI CCCGC 1 cut(s) 903
FbaI TGATCA 1 cut(s) 942
FblI GTMKAC 1 cut(s) 723
Fnu4HI GCNGC 3 cut(s) 614, 980, 1157
FokI GGATG 4 cut(s) 521, 1109, 1112, 1123
FriOI GRGCYC 2 cut(s) 334, 687
Fsp4HI GCNGC 3 cut(s) 614, 980, 1157
FspBI CTAG 2 cut(s) 347, 668
GluI GCNGC 3 cut(s) 614, 980, 1157
GsaI CCCAGC 1 cut(s) 1021
HaeIII GGCC 1 cut(s) 776
HapII CCGG 2 cut(s) 231, 441
HgaI GACGC 1 cut(s) 819
Hin1II CATG 6 cut(s) 365, 425, 460, 875, 883, 910
HincII GTYRAC 3 cut(s) 724, 820, 828
HindII GTYRAC 3 cut(s) 724, 820, 828
HindIII AAGCTT 1 cut(s) 740
HinfI GANTC 6 cut(s) 91, 105, 184, 583, 664, 748
HpaII CCGG 2 cut(s) 231, 441
HphI GGTGA 2 cut(s) 679, 937
Hpy166II GTNNAC 4 cut(s) 724, 820, 828, 1055
Hpy188I TCNGA 2 cut(s) 549, 1184
Hpy188III TCNNGA 8 cut(s) 86, 176, 201, 296, 482, 493, 626, 1126
Hpy8I GTNNAC 4 cut(s) 724, 820, 828, 1055
Hpy99I CGWCG 2 cut(s) 813, 1172
HpyAV CCTTC 7 cut(s) 172, 248, 313, 459, 689, 1059, 1063
HpyCH4III ACNGT 2 cut(s) 119, 859
HpyCH4IV ACGT 4 cut(s) 975, 1057, 1140, 1167
HpyCH4V TGCA 6 cut(s) 17, 168, 287, 361, 421, 979
HpyF10VI GCNNNNNNNGC 3 cut(s) 466, 682, 1018
HpyF3I CTNAG 5 cut(s) 98, 195, 461, 618, 1023
HpySE526I ACGT 4 cut(s) 975, 1057, 1140, 1167
Hsp92II CATG 6 cut(s) 365, 425, 460, 875, 883, 910
Ksp22I TGATCA 1 cut(s) 942
Kzo9I GATC 8 cut(s) 544, 549, 630, 757, 942, 952, 1006, 1174
LmnI GCTCC 2 cut(s) 843, 1153
Lsp1109I GCAGC 2 cut(s) 991, 1143
LweI GCATC 3 cut(s) 61, 498, 1101
MaeI CTAG 2 cut(s) 347, 668
MaeII ACGT 4 cut(s) 975, 1057, 1140, 1167
MaeIII GTNAC 2 cut(s) 471, 1090
MalI GATC 8 cut(s) 546, 551, 632, 759, 944, 954, 1008, 1176
MboI GATC 8 cut(s) 544, 549, 630, 757, 942, 952, 1006, 1174
MboII GAAGA 2 cut(s) 74, 563
MflI RGATCY 1 cut(s) 549
MhlI GDGCHC 2 cut(s) 334, 687
MlsI TGGCCA 1 cut(s) 776
MluCI AATT 6 cut(s) 8, 32, 153, 707, 914, 1041
MluNI TGGCCA 1 cut(s) 776
MlyI GAGTC 1 cut(s) 742
MmeI TCCRAC 1 cut(s) 412
Mox20I TGGCCA 1 cut(s) 776
MscI TGGCCA 1 cut(s) 776
MseI TTAA 1 cut(s) 999
MslI CAYNNNNRTG 3 cut(s) 366, 494, 905
Msp20I TGGCCA 1 cut(s) 776
MspI CCGG 2 cut(s) 231, 441
MspR9I CCNGG 2 cut(s) 441, 692
Mva1269I GAATGC 1 cut(s) 402
MvaI CCWGG 1 cut(s) 692
MwoI GCNNNNNNNGC 3 cut(s) 466, 682, 1018
NciI CCSGG 1 cut(s) 441
NcoI CCATGG 1 cut(s) 871
NdeII GATC 8 cut(s) 544, 549, 630, 757, 942, 952, 1006, 1174
NlaIII CATG 6 cut(s) 365, 425, 460, 875, 883, 910
NlaIV GGNNCC 1 cut(s) 379
NmeAIII GCCGAG 1 cut(s) 113
NmuCI GTSAC 1 cut(s) 471
NspI RCATGY 3 cut(s) 365, 425, 460
PaeI GCATGC 1 cut(s) 365
PaeR7I CTCGAG 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 1054
PctI GAATGC 1 cut(s) 402
PfeI GAWTC 5 cut(s) 91, 105, 184, 583, 664
Pfl23II CGTACG 1 cut(s) 45
PflMI CCANNNNNTGG 1 cut(s) 277
PkrI GCNGC 3 cut(s) 615, 981, 1158
PleI GAGTC 1 cut(s) 742
PpsI GAGTC 1 cut(s) 742
Psp124BI GAGCTC 1 cut(s) 687
Psp6I CCWGG 1 cut(s) 690
PspFI CCCAGC 1 cut(s) 1017
PspGI CCWGG 1 cut(s) 690
PspLI CGTACG 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 379
PspPI GGNCC 2 cut(s) 394, 883
PstNI CAGNNNCTG 1 cut(s) 863
PsuI RGATCY 1 cut(s) 549
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
RseI CAYNNNNRTG 3 cut(s) 366, 494, 905
SacI GAGCTC 1 cut(s) 687
SalI GTCGAC 1 cut(s) 722
SaqAI TTAA 1 cut(s) 999
SatI GCNGC 3 cut(s) 614, 980, 1157
Sau3AI GATC 8 cut(s) 544, 549, 630, 757, 942, 952, 1006, 1174
Sau96I GGNCC 2 cut(s) 394, 883
SchI GAGTC 1 cut(s) 742
ScrFI CCNGG 2 cut(s) 441, 692
SduI GDGCHC 2 cut(s) 334, 687
SfaNI GCATC 3 cut(s) 61, 498, 1101
Sfr274I CTCGAG 1 cut(s) 294
SinI GGWCC 2 cut(s) 394, 883
SlaI CTCGAG 1 cut(s) 294
SmiMI CAYNNNNRTG 3 cut(s) 366, 494, 905
SmlI CTYRAG 3 cut(s) 294, 626, 743
SmoI CTYRAG 3 cut(s) 294, 626, 743
SphI GCATGC 1 cut(s) 365
Sse9I AATT 6 cut(s) 8, 32, 153, 707, 914, 1041
SsiI CCGC 2 cut(s) 614, 910
SspMI CTAG 2 cut(s) 347, 668
SstI GAGCTC 1 cut(s) 687
StyD4I CCNGG 2 cut(s) 439, 690
StyI CCWWGG 3 cut(s) 276, 771, 871
TaaI ACNGT 2 cut(s) 119, 859
TaiI ACGT 4 cut(s) 978, 1060, 1143, 1170
TaqI TCGA 5 cut(s) 295, 723, 808, 1119, 1163
TasI AATT 6 cut(s) 8, 32, 153, 707, 914, 1041
TauI GCSGC 1 cut(s) 616
TfiI GAWTC 5 cut(s) 91, 105, 184, 583, 664
Tru1I TTAA 1 cut(s) 999
Tru9I TTAA 1 cut(s) 999
TscAI CASTG 2 cut(s) 388, 955
TseFI GTSAC 1 cut(s) 471
TseI GCWGC 2 cut(s) 979, 1156
Tsp45I GTSAC 1 cut(s) 471
TspDTI ATGAA 3 cut(s) 66, 534, 662
TspGWI ACGGA 2 cut(s) 377, 908
TspRI CASTG 2 cut(s) 388, 955
Van91I CCANNNNNTGG 1 cut(s) 277
VpaK11BI GGWCC 2 cut(s) 394, 883
XapI RAATTY 2 cut(s) 32, 914
XceI RCATGY 3 cut(s) 365, 425, 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 955
XhoI CTCGAG 1 cut(s) 294
XmiI GTMKAC 1 cut(s) 723
XspI CTAG 2 cut(s) 347, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.