RchiOBHm_Chr2g0144411

Belongs to the DEAD box helicase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
62015426 .. 62017011
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51435

Sequence Viewer

Length: 1242 bp
ATGACAGGTGTTGCTAGTGGAAGTTCACAATTTGATGCTCATCAATATGATGCTAAAATGAATCAGTTACTCTCAACTGATGGACAAGAATTCTTCACCTCATTCGATGAGGTTTATGAGAGTTTCGACTCTATGGGATTGCAAGAAAATCTCCTTAGAGGCCTTTATGCATATGGTTTTGAGAAGCCTTCTGCGATTCAGCAGAGGGGCATTGTTCCTTTCTGCAGAGGTCTTGATGTGATTCAACAGGCTCAATCCGGAACCGGGAAAACAGCAACTTTCTGCTCTGGAATTTTGCAAAACATTGATTATGATCTTGTCCAATGCCAGGCTTTGGCTTTGGTACCAACCAGGGAGTTGGCACGACAGATCGAGAAGGTTATGCGAGCACTTGGTGACTATCTTGGCGTGAAGGTTCATGCTTGCGTTGGTGGGACAAGTGTTCGTGAGGATCAACGAATTCTTCAAGCTGGTGTCCACGTTGTTATTGGAACTCCAGGGCGTGTTCTTGACATGTTGAAGAGGCAATATCTTAGGTCAGATTGCATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCTTGGTTTCAAGGATCAGATCTATGATATTTTCCAGCAGCTGCCATCGAATATTCAGGTGGGGGTGTTTTCTGCTACTATGCCATCTGAAGCCCTTGAACTCACAAAGAAGTTTATGAACAAACCTGTGAGGATCTTAGTAAAGCGGGATGAGCTCACTCTTGAGGGTATCAAACAATTTTATGTCAATGTTGATAAGGAACAATGGAAGTTCGACACACTGTGTGATCTCTACGAGACCTTAACCATCACCCAATGTGTCATCTTTGTCAACACAAGGCGCAATGTTGACTGGCTTACTGACAAGATGCGCAGCCGTGATCACACCGTCTCTGCTATCCATGGTGAAATGGAACAGAACACTCGTGATATCATTATGCGTGAATTCAGATCCGGCTCTTCTCGTGTTCTAATAACCACTGATCTCATGGCTCGCGGTATTGATGTGCAGCAAGTATCTCTTGTGATAAATTATGATTTGCCAACTCAACCAGAAAATTACCTTCATCGTATAGGACGAAGTGGAAGATTTGGAAGAAAAGGTGTGGCGATCAACTTTGTGACATCAGACAGCGAGAGAATGCTGCATGATATTAAGAACTTTTACCAAGTTGTCATTGAGGAGCTGCCGGACAGATTTGGTGATCTCCTCTGA

Protein Analysis

413

Amino Acids

46.96

Weight (kDa)

5.52

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 65 - 227 6.9e-42 DEAD/DEAH box helicase
Helicase_C PF00271 265 - 374 7.1e-33 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 899
Acc65I GGTACC 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 343
AccB7I CCANNNNNTGG 1 cut(s) 334
AccII CGCG 1 cut(s) 1023
AccIII TCCGGA 1 cut(s) 257
AciI CCGC 2 cut(s) 733, 1023
AclWI GGATC 4 cut(s) 459, 609, 728, 972
AcsI RAATTY 4 cut(s) 89, 291, 459, 971
AcuI CTGAAG 1 cut(s) 696
AdeI CACNNNGTG 3 cut(s) 395, 810, 812
AfaI GTAC 1 cut(s) 345
AfiI CCNNNNNNNGG 3 cut(s) 264, 328, 334
AflIII ACRYGT 1 cut(s) 513
AgsI TTSAA 5 cut(s) 245, 467, 520, 598, 686
AjnI CCWGG 3 cut(s) 327, 350, 496
AluBI AGCT 5 cut(s) 470, 572, 628, 742, 1213
AluI AGCT 5 cut(s) 470, 572, 628, 742, 1213
Alw21I GWGCWC 2 cut(s) 391, 744
Alw26I GTCTC 2 cut(s) 818, 922
AlwI GGATC 4 cut(s) 459, 609, 728, 972
AlwNI CAGNNNCTG 1 cut(s) 628
Aor13HI TCCGGA 1 cut(s) 257
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 6 cut(s) 625, 628, 900, 1036, 1171, 1213
ApoI RAATTY 4 cut(s) 89, 291, 459, 971
Asp718I GGTACC 1 cut(s) 343
AspLEI GCGC 2 cut(s) 870, 900
AsuC2I CCSGG 1 cut(s) 265
AsuHPI GGTGA 5 cut(s) 88, 407, 829, 944, 1241
BanI GGYRCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 744
BauI CACGAG 2 cut(s) 951, 990
Bbv12I GWGCWC 2 cut(s) 391, 744
BbvI GCAGC 6 cut(s) 615, 637, 912, 1048, 1158, 1200
BccI CCATC 4 cut(s) 74, 640, 679, 842
BceAI ACGGC 1 cut(s) 888
BciT130I CCWGG 3 cut(s) 329, 352, 498
BclI TGATCA 1 cut(s) 907
BcnI CCSGG 1 cut(s) 265
BcoDI GTCTC 2 cut(s) 818, 922
BfaI CTAG 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 223
BglII AGATCT 1 cut(s) 606
BisI GCNGC 6 cut(s) 626, 629, 901, 1037, 1172, 1214
BlsI GCNGC 6 cut(s) 627, 630, 902, 1038, 1173, 1215
Bme1390I CCNGG 4 cut(s) 265, 329, 352, 498
BmiI GGNNCC 2 cut(s) 262, 345
BmrFI CCNGG 4 cut(s) 265, 329, 352, 498
BmsI GCATC 3 cut(s) 25, 40, 885
BpmI CTGGAG 1 cut(s) 480
BpuEI CTTGAG 1 cut(s) 770
BpuMI CCSGG 1 cut(s) 265
BsaBI GATNNNNATC 2 cut(s) 39, 312
BsaI GGTCTC 1 cut(s) 818
BsaJI CCNNGG 3 cut(s) 351, 497, 928
BsaWI WCCGGW 1 cut(s) 257
Bsc4I CCNNNNNNNGG 3 cut(s) 264, 328, 334
Bse1I ACTGG 1 cut(s) 884
Bse3DI GCAATG 1 cut(s) 877
Bse8I GATNNNNATC 2 cut(s) 39, 312
BseAI TCCGGA 1 cut(s) 257
BseBI CCWGG 3 cut(s) 329, 352, 498
BseDI CCNNGG 3 cut(s) 351, 497, 928
BseGI GGATG 2 cut(s) 571, 742
BseJI GATNNNNATC 2 cut(s) 39, 312
BseLI CCNNNNNNNGG 3 cut(s) 264, 328, 334
BseMI GCAATG 1 cut(s) 877
BseNI ACTGG 1 cut(s) 884
BseRI GAGGAG 2 cut(s) 1223, 1226
BseXI GCAGC 6 cut(s) 615, 637, 912, 1048, 1158, 1200
BsgI GTGCAG 1 cut(s) 1055
Bsh1236I CGCG 1 cut(s) 1023
BshFI GGCC 1 cut(s) 162
BshNI GGYRCC 1 cut(s) 343
BsiHKAI GWGCWC 2 cut(s) 391, 744
BsiSI CCGG 4 cut(s) 258, 264, 981, 1217
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 3 cut(s) 264, 328, 334
BsmAI GTCTC 2 cut(s) 818, 922
BsmBI CGTCTC 1 cut(s) 922
BsmFI GGGAC 1 cut(s) 448
BsmI GAATGC 1 cut(s) 1173
BsnI GGCC 1 cut(s) 162
Bso31I GGTCTC 1 cut(s) 818
Bsp1286I GDGCHC 2 cut(s) 391, 744
Bsp13I TCCGGA 1 cut(s) 257
Bsp19I CCATGG 1 cut(s) 928
BspACI CCGC 2 cut(s) 733, 1023
BspANI GGCC 1 cut(s) 162
BspEI TCCGGA 1 cut(s) 257
BspFNI CGCG 1 cut(s) 1023
BspLI GGNNCC 2 cut(s) 262, 345
BspMAI CTGCAG 1 cut(s) 227
BspPI GGATC 4 cut(s) 459, 609, 728, 972
BspQI GCTCTTC 1 cut(s) 991
BspT107I GGYRCC 1 cut(s) 343
BspTNI GGTCTC 1 cut(s) 818
BsrDI GCAATG 1 cut(s) 877
BsrI ACTGG 1 cut(s) 884
BssECI CCNNGG 3 cut(s) 351, 497, 928
BssSI CACGAG 2 cut(s) 951, 990
BssT1I CCWWGG 1 cut(s) 928
Bst2BI CACGAG 2 cut(s) 951, 990
Bst2UI CCWGG 3 cut(s) 329, 352, 498
Bst4CI ACNGT 2 cut(s) 810, 916
Bst6I CTCTTC 2 cut(s) 515, 991
BstC8I GCNNGC 3 cut(s) 387, 424, 1021
BstDEI CTNAG 3 cut(s) 155, 533, 724
BstDSI CCRYGG 1 cut(s) 928
BstF5I GGATG 2 cut(s) 571, 742
BstFNI CGCG 1 cut(s) 1023
BstHHI GCGC 2 cut(s) 870, 900
BstMAI GTCTC 2 cut(s) 818, 922
BstMWI GCNNNNNNNGC 1 cut(s) 739
BstNI CCWGG 3 cut(s) 329, 352, 498
BstNSI RCATGY 1 cut(s) 517
BstSCI CCNGG 4 cut(s) 263, 327, 350, 496
BstSFI CTRYAG 1 cut(s) 223
BstUI CGCG 1 cut(s) 1023
BstV1I GCAGC 6 cut(s) 615, 637, 912, 1048, 1158, 1200
BstX2I RGATCY 3 cut(s) 606, 720, 977
BstXI CCANNNNNNTGG 1 cut(s) 358
BstYI RGATCY 3 cut(s) 606, 720, 977
BsuRI GGCC 1 cut(s) 162
BtgI CCRYGG 1 cut(s) 928
BtsCI GGATG 2 cut(s) 571, 742
BtsIMutI CAGTG 2 cut(s) 806, 1005
Cac8I GCNNGC 3 cut(s) 387, 424, 1021
CaiI CAGNNNCTG 1 cut(s) 628
CfoI GCGC 2 cut(s) 870, 900
Csp6I GTAC 1 cut(s) 344
CviAII CATG 5 cut(s) 419, 514, 929, 1015, 1175
CviQI GTAC 1 cut(s) 344
DdeI CTNAG 3 cut(s) 155, 533, 724
DraIII CACNNNGTG 3 cut(s) 395, 810, 812
Eam1104I CTCTTC 2 cut(s) 515, 991
EarI CTCTTC 2 cut(s) 515, 991
Ecl136II GAGCTC 1 cut(s) 742
Eco130I CCWWGG 1 cut(s) 928
Eco147I AGGCCT 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 744
Eco31I GGTCTC 1 cut(s) 818
Eco32I GATATC 1 cut(s) 958
Eco53kI GAGCTC 1 cut(s) 742
Eco57I CTGAAG 1 cut(s) 696
EcoICRI GAGCTC 1 cut(s) 742
EcoRI GAATTC 3 cut(s) 89, 459, 971
EcoRII CCWGG 3 cut(s) 327, 350, 496
EcoRV GATATC 1 cut(s) 958
EcoT14I CCWWGG 1 cut(s) 928
EcoT22I ATGCAT 1 cut(s) 172
EcoT38I GRGCYC 1 cut(s) 744
ErhI CCWWGG 1 cut(s) 928
Esp3I CGTCTC 1 cut(s) 922
FaeI CATG 5 cut(s) 422, 517, 932, 1018, 1178
FalI AAGNNNNNCTT 2 cut(s) 1032, 1064
FaqI GGGAC 1 cut(s) 448
FatI CATG 5 cut(s) 418, 513, 928, 1014, 1174
FauI CCCGC 1 cut(s) 726
FauNDI CATATG 1 cut(s) 172
FbaI TGATCA 1 cut(s) 907
Fnu4HI GCNGC 6 cut(s) 626, 629, 901, 1037, 1172, 1214
FokI GGATG 2 cut(s) 578, 749
FriOI GRGCYC 1 cut(s) 744
Fsp4HI GCNGC 6 cut(s) 626, 629, 901, 1037, 1172, 1214
FspBI CTAG 1 cut(s) 15
FspI TGCGCA 1 cut(s) 899
GlaI GCGC 2 cut(s) 869, 899
GluI GCNGC 6 cut(s) 626, 629, 901, 1037, 1172, 1214
GsuI CTGGAG 1 cut(s) 480
HaeIII GGCC 1 cut(s) 162
HapII CCGG 4 cut(s) 258, 264, 981, 1217
HhaI GCGC 2 cut(s) 870, 900
Hin1II CATG 5 cut(s) 422, 517, 932, 1018, 1178
Hin6I GCGC 2 cut(s) 868, 898
HinP1I GCGC 2 cut(s) 868, 898
HincII GTYRAC 2 cut(s) 859, 877
HindII GTYRAC 2 cut(s) 859, 877
HinfI GANTC 4 cut(s) 61, 128, 196, 241
HpaII CCGG 4 cut(s) 258, 264, 981, 1217
HphI GGTGA 5 cut(s) 88, 407, 829, 944, 1241
Hpy166II GTNNAC 4 cut(s) 26, 478, 859, 877
Hpy188I TCNGA 6 cut(s) 541, 606, 676, 977, 1156, 1241
Hpy188III TCNNGA 8 cut(s) 233, 258, 288, 373, 446, 509, 749, 953
Hpy8I GTNNAC 4 cut(s) 26, 478, 859, 877
HpyAV CCTTC 4 cut(s) 198, 370, 406, 1100
HpyCH4III ACNGT 2 cut(s) 810, 916
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 7 cut(s) 142, 170, 225, 298, 546, 1036, 1174
HpyF10VI GCNNNNNNNGC 1 cut(s) 739
HpyF3I CTNAG 3 cut(s) 155, 533, 724
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 5 cut(s) 422, 517, 932, 1018, 1178
HspAI GCGC 2 cut(s) 868, 898
Kpn2I TCCGGA 1 cut(s) 257
KpnI GGTACC 1 cut(s) 347
Ksp22I TGATCA 1 cut(s) 907
LguI GCTCTTC 1 cut(s) 991
LmnI GCTCC 1 cut(s) 1210
Lsp1109I GCAGC 6 cut(s) 615, 637, 912, 1048, 1158, 1200
LweI GCATC 3 cut(s) 25, 40, 885
MaeI CTAG 1 cut(s) 15
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 3 cut(s) 66, 395, 1147
MboII GAAGA 6 cut(s) 85, 455, 532, 978, 1125, 1134
MflI RGATCY 3 cut(s) 606, 720, 977
MhlI GDGCHC 2 cut(s) 391, 744
MluCI AATT 8 cut(s) 29, 89, 291, 459, 764, 971, 1057, 1084
MlyI GAGTC 1 cut(s) 122
Mph1103I ATGCAT 1 cut(s) 172
MroI TCCGGA 1 cut(s) 257
MseI TTAA 3 cut(s) 549, 830, 1182
MslI CAYNNNNRTG 2 cut(s) 45, 551
MspA1I CMGCKG 1 cut(s) 628
MspI CCGG 4 cut(s) 258, 264, 981, 1217
MspR9I CCNGG 4 cut(s) 265, 329, 352, 498
Mva1269I GAATGC 1 cut(s) 1173
MvaI CCWGG 3 cut(s) 329, 352, 498
MvnI CGCG 1 cut(s) 1023
MwoI GCNNNNNNNGC 1 cut(s) 739
NciI CCSGG 1 cut(s) 265
NcoI CCATGG 1 cut(s) 928
NdeI CATATG 1 cut(s) 172
NlaIII CATG 5 cut(s) 422, 517, 932, 1018, 1178
NlaIV GGNNCC 2 cut(s) 262, 345
NmuCI GTSAC 2 cut(s) 395, 1147
NsbI TGCGCA 1 cut(s) 899
NsiI ATGCAT 1 cut(s) 172
NspI RCATGY 1 cut(s) 517
PceI AGGCCT 1 cut(s) 162
PciI ACATGT 1 cut(s) 513
PciSI GCTCTTC 1 cut(s) 991
PcsI WCGNNNNNNNCGW 1 cut(s) 1102
PctI GAATGC 1 cut(s) 1173
PfeI GAWTC 3 cut(s) 61, 196, 241
PflMI CCANNNNNTGG 1 cut(s) 334
PkrI GCNGC 6 cut(s) 627, 630, 902, 1038, 1173, 1215
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PscI ACATGT 1 cut(s) 513
Psp124BI GAGCTC 1 cut(s) 744
Psp6I CCWGG 3 cut(s) 327, 350, 496
PspGI CCWGG 3 cut(s) 327, 350, 496
PspN4I GGNNCC 2 cut(s) 262, 345
PstI CTGCAG 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 628
PsuI RGATCY 3 cut(s) 606, 720, 977
PvuII CAGCTG 1 cut(s) 628
RsaI GTAC 1 cut(s) 345
RsaNI GTAC 1 cut(s) 344
RseI CAYNNNNRTG 2 cut(s) 45, 551
SacI GAGCTC 1 cut(s) 744
SapI GCTCTTC 1 cut(s) 991
SaqAI TTAA 3 cut(s) 549, 830, 1182
SatI GCNGC 6 cut(s) 626, 629, 901, 1037, 1172, 1214
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 4 cut(s) 265, 329, 352, 498
SduI GDGCHC 2 cut(s) 391, 744
SfaNI GCATC 3 cut(s) 25, 40, 885
SfcI CTRYAG 1 cut(s) 223
SmiMI CAYNNNNRTG 2 cut(s) 45, 551
SmlI CTYRAG 1 cut(s) 749
SmoI CTYRAG 1 cut(s) 749
Sse9I AATT 8 cut(s) 29, 89, 291, 459, 764, 971, 1057, 1084
SseBI AGGCCT 1 cut(s) 162
SsiI CCGC 2 cut(s) 733, 1023
SspI AATATT 1 cut(s) 640
SspMI CTAG 1 cut(s) 15
SstI GAGCTC 1 cut(s) 744
StuI AGGCCT 1 cut(s) 162
StyD4I CCNGG 4 cut(s) 263, 327, 350, 496
StyI CCWWGG 1 cut(s) 928
TaaI ACNGT 2 cut(s) 810, 916
TaiI ACGT 1 cut(s) 483
TaqI TCGA 5 cut(s) 105, 126, 372, 635, 801
TasI AATT 8 cut(s) 29, 89, 291, 459, 764, 971, 1057, 1084
TfiI GAWTC 3 cut(s) 61, 196, 241
Tru1I TTAA 3 cut(s) 549, 830, 1182
Tru9I TTAA 3 cut(s) 549, 830, 1182
TscAI CASTG 2 cut(s) 813, 1012
TseFI GTSAC 2 cut(s) 395, 1147
TseI GCWGC 6 cut(s) 625, 628, 900, 1036, 1171, 1213
Tsp45I GTSAC 2 cut(s) 395, 1147
TspDTI ATGAA 6 cut(s) 74, 407, 582, 591, 719, 1082
TspRI CASTG 2 cut(s) 813, 1012
Van91I CCANNNNNTGG 1 cut(s) 334
XapI RAATTY 4 cut(s) 89, 291, 459, 971
XceI RCATGY 1 cut(s) 517
XcmI CCANNNNNNNNNTGG 2 cut(s) 485, 1012
XspI CTAG 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.