Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001531

Physical Location & Seq

Genomic Coordinates Forward (+)

24184133 .. 24185954

Gene Structure 1822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGAGGAATTGGAACCTAGTTTGAAACCCAGAATTGAAGAGGCTGTGAAGGTGGTTGCAAAAATGGGTCAAGATAAACTTTGGTTCAATGAAAAATTGACGCAAAAGAAGCTTGATAGGGGTGGTTTACTATATCTGAATTGGCGTAAAGAGGAACTCGCACATTCTGTGATCCTTGAAAGGAAGAAAATAGATCTTCTGGAACTACTTCTACATAAGCTTCGTTTCACAGATAATGGTTACCAAAAGAAACCAATTGAGGCATGCTTGTCAGCACAAGAGATTAAGAAACATAACTTGCGTTTTCGGATGGTACATGAAAGCAAGAGTTTGGCTAGTGAAAAGCGGCTTCTGAAAGAGATTAAAGGGAGCCAGAAGCTGCAGGAGGAGGATGACAGTTTTGCTTCATTTTGTACTCAATGTGAAGCAGATCTTGCATATGTTACTAAACATTTGAAACAGATTGGGAACATATATACAAGGCACAGTAGGTACCCTAATTGGTGGTGGAATATTGCTCGTGATGAACAGATGTGGTGGTTACAACACCGAATGCCATTTCTGATCAGCAAGGGAGATACTAAAGACCGCGAAGGAGAAATCAGAGATCTTAAATGCAGAATAGAAAGATGTGGAGTTGTACTGCTAAAGAAAGCAGATAAAACACCAATTGCTGATGATACAAATGCAAATGCTAGTCCTACTCTCGTGAGGGGAAAGACTAGGACTTCTTTGGTTTCAAAAAAGGCCTTACAAGAACAAATTAAGCTTTCTGGTAAGAAAATAGAGGAATCAAGGAAAACCCTATTGGCTCTCGGCCTTGGGCCAAAAAGTTGTAAAGCTCAGAGAAACTTGGTGGGTGTGGAAAAGGAGATGGCATCACTGAGGAAGAAATTGCCGGGACTAGATCAGAGGAAAAGTGAAGCACACCAATGCATTCTGGAACTCTTCACAAAACAACAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

323

Amino Acids

37.41

Weight (kDa)

9.56

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11970
fragaria_vesca	FvH4_2g31530 FvH4_2g31540 FvH4_2g31541 FvH4_2g31550 FvH4_2g31590 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591
malus_domestica	MD08G1065000.v1.1 MD08G1065100.v1.1 MD08G1065200.v1.1 MD15G1056600.v1.1
prunus_persica	Prupe.1G409100_v2.0.a1 Prupe.1G409200_v2.0.a1
pyrus_communis	pycom08g05380 pycom08g05390 pycom15g05300
rosa_chinensis	RchiOBHm_Chr6g0311231
rosa_laevigata	RLG00000010424 RLG00000010425
rosa_multiflora	Rmu_sc0012046.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157850 Rroxscaffold_7G00157860 Rroxscaffold_7G00157870 Rroxscaffold_7G00157880
rosa_rugosa	Rorug06G0386700.1 Rorug06G0386800 Rorug06G0386800
rosa_samantha	Rh6AG500900 Rh6AG501000 Rh6AG501100 Rh6AG501200 Rh6BG511400 Rh6BG511500 Rh6BG511600 Rh6BG511700 Rh6BG511800 Rh6CG517200 Rh6CG517300 Rh6CG517400 Rh6CG517500 Rh6CG517700 Rh6DG503700 Rh6DG503800
rosa_wichuraiana	Rw6G043610 Rw6G043640 Rw6G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	492
AccB1I	GGYRCC	1 cut(s)	492
AccII	CGCG	1 cut(s)	591
AciI	CCGC	2 cut(s)	346, 589
AclWI	GGATC	1 cut(s)	166
AfaI	GTAC	4 cut(s)	315, 415, 494, 642
AgsI	TTSAA	6 cut(s)	25, 38, 88, 179, 457, 741
AjuI	GAANNNNNNNTTGG	2 cut(s)	791, 823
AluBI	AGCT	5 cut(s)	112, 220, 379, 769, 842
AluI	AGCT	5 cut(s)	112, 220, 379, 769, 842
AlwI	GGATC	1 cut(s)	166
AlwNI	CAGNNNCTG	1 cut(s)	379
AoxI	GGCC	3 cut(s)	747, 817, 824
ApeKI	GCWGC	1 cut(s)	379
Asp700I	GAANNNNTTC	1 cut(s)	207
Asp718I	GGTACC	1 cut(s)	492
AspS9I	GGNCC	1 cut(s)	824
AsuC2I	CCSGG	1 cut(s)	900
BanI	GGYRCC	1 cut(s)	492
BauI	CACGAG	2 cut(s)	519, 707
BbvI	GCAGC	1 cut(s)	366
BccI	CCATC	2 cut(s)	304, 868
BclI	TGATCA	1 cut(s)	564
BcnI	CCSGG	1 cut(s)	900
BfaI	CTAG	6 cut(s)	18, 336, 696, 723, 905, 967
BfmI	CTRYAG	1 cut(s)	380
BglII	AGATCT	3 cut(s)	193, 430, 607
BisI	GCNGC	2 cut(s)	347, 380
BlsI	GCNGC	2 cut(s)	348, 381
Bme1390I	CCNGG	1 cut(s)	900
BmgT120I	GGNCC	1 cut(s)	824
BmiI	GGNNCC	3 cut(s)	15, 371, 494
BmrFI	CCNGG	1 cut(s)	900
BmsI	GCATC	1 cut(s)	887
BpuMI	CCSGG	1 cut(s)	900
BsaJI	CCNNGG	1 cut(s)	820
BseDI	CCNNGG	1 cut(s)	820
BseGI	GGATG	2 cut(s)	315, 397
BseMII	CTCAG	2 cut(s)	857, 875
BseRI	GAGGAG	1 cut(s)	401
BseXI	GCAGC	1 cut(s)	366
Bsh1236I	CGCG	1 cut(s)	591
BshFI	GGCC	3 cut(s)	749, 819, 826
BshNI	GGYRCC	1 cut(s)	492
BsiSI	CCGG	1 cut(s)	899
BslFI	GGGAC	1 cut(s)	915
BsmFI	GGGAC	1 cut(s)	915
BsmI	GAATGC	2 cut(s)	558, 936
BsnI	GGCC	3 cut(s)	749, 819, 826
Bsp143I	GATC	6 cut(s)	171, 193, 430, 564, 607, 907
BspACI	CCGC	2 cut(s)	346, 589
BspANI	GGCC	3 cut(s)	749, 819, 826
BspCNI	CTCAG	2 cut(s)	856, 876
BspFNI	CGCG	1 cut(s)	591
BspLI	GGNNCC	3 cut(s)	15, 371, 494
BspMAI	CTGCAG	1 cut(s)	384
BspPI	GGATC	1 cut(s)	166
BspT107I	GGYRCC	1 cut(s)	492
BssECI	CCNNGG	1 cut(s)	820
BssMI	GATC	6 cut(s)	171, 193, 430, 564, 607, 907
BssSI	CACGAG	2 cut(s)	519, 707
BssT1I	CCWWGG	1 cut(s)	820
Bst2BI	CACGAG	2 cut(s)	519, 707
Bst4CI	ACNGT	2 cut(s)	398, 488
Bst6I	CTCTTC	2 cut(s)	33, 953
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	2 cut(s)	843, 884
BstEII	GGTNACC	1 cut(s)	239
BstF5I	GGATG	2 cut(s)	315, 397
BstFNI	CGCG	1 cut(s)	591
BstKTI	GATC	6 cut(s)	174, 196, 433, 567, 610, 910
BstMBI	GATC	6 cut(s)	171, 193, 430, 564, 607, 907
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 434
BstNSI	RCATGY	1 cut(s)	267
BstPI	GGTNACC	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	898
BstSFI	CTRYAG	1 cut(s)	380
BstUI	CGCG	1 cut(s)	591
BstV1I	GCAGC	1 cut(s)	366
BstX2I	RGATCY	3 cut(s)	193, 430, 607
BstYI	RGATCY	3 cut(s)	193, 430, 607
BsuRI	GGCC	3 cut(s)	749, 819, 826
BtsCI	GGATG	2 cut(s)	315, 397
BtsIMutI	CAGTG	1 cut(s)	881
Cac8I	GCNNGC	1 cut(s)	265
CaiI	CAGNNNCTG	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	824
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	4 cut(s)	314, 414, 493, 641
CviAII	CATG	2 cut(s)	264, 317
CviQI	GTAC	4 cut(s)	314, 414, 493, 641
DdeI	CTNAG	2 cut(s)	843, 884
DpnI	GATC	6 cut(s)	173, 195, 432, 566, 609, 909
DpnII	GATC	6 cut(s)	171, 193, 430, 564, 607, 907
Eam1104I	CTCTTC	2 cut(s)	33, 953
EarI	CTCTTC	2 cut(s)	33, 953
Eco130I	CCWWGG	1 cut(s)	820
Eco147I	AGGCCT	1 cut(s)	749
Eco91I	GGTNACC	1 cut(s)	239
EcoO65I	GGTNACC	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	820
EcoT22I	ATGCAT	1 cut(s)	938
ErhI	CCWWGG	1 cut(s)	820
FaeI	CATG	2 cut(s)	267, 320
FalI	AAGNNNNNCTT	4 cut(s)	63, 95, 417, 449
FaqI	GGGAC	1 cut(s)	915
FatI	CATG	2 cut(s)	263, 316
FauNDI	CATATG	1 cut(s)	439
FbaI	TGATCA	1 cut(s)	564
Fnu4HI	GCNGC	2 cut(s)	347, 380
FokI	GGATG	2 cut(s)	322, 404
Fsp4HI	GCNGC	2 cut(s)	347, 380
FspBI	CTAG	6 cut(s)	18, 336, 696, 723, 905, 967
GluI	GCNGC	2 cut(s)	347, 380
HaeIII	GGCC	3 cut(s)	749, 819, 826
HapII	CCGG	1 cut(s)	899
HgaI	GACGC	1 cut(s)	109
Hin1II	CATG	2 cut(s)	267, 320
HindIII	AAGCTT	3 cut(s)	110, 218, 767
HinfI	GANTC	1 cut(s)	791
HpaII	CCGG	1 cut(s)	899
Hpy166II	GTNNAC	1 cut(s)	128
Hpy188I	TCNGA	7 cut(s)	138, 309, 354, 564, 605, 846, 912
Hpy188III	TCNNGA	5 cut(s)	71, 200, 521, 709, 941
Hpy8I	GTNNAC	1 cut(s)	128
HpyAV	CCTTC	2 cut(s)	43, 587
HpyCH4III	ACNGT	2 cut(s)	398, 488
HpyCH4V	TGCA	6 cut(s)	59, 382, 437, 618, 689, 936
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 434
HpyF3I	CTNAG	2 cut(s)	843, 884
Hsp92II	CATG	2 cut(s)	267, 320
KpnI	GGTACC	1 cut(s)	496
Ksp22I	TGATCA	1 cut(s)	564
Kzo9I	GATC	6 cut(s)	171, 193, 430, 564, 607, 907
LmnI	GCTCC	1 cut(s)	369
LpnPI	CCDG	7 cut(s)	43, 185, 368, 386, 759, 912, 926
Lsp1109I	GCAGC	1 cut(s)	366
LweI	GCATC	1 cut(s)	887
MaeI	CTAG	6 cut(s)	18, 336, 696, 723, 905, 967
MaeIII	GTNAC	3 cut(s)	239, 442, 540
MalI	GATC	6 cut(s)	173, 195, 432, 566, 609, 909
MboI	GATC	6 cut(s)	171, 193, 430, 564, 607, 907
MboII	GAAGA	5 cut(s)	50, 188, 196, 901, 940
MfeI	CAATTG	2 cut(s)	255, 669
MflI	RGATCY	3 cut(s)	193, 430, 607
MluCI	AATT	9 cut(s)	8, 33, 95, 139, 255, 499, 669, 762, 893
MnlI	CCTC	9 cut(s)	34, 145, 253, 379, 382, 705, 781, 879, 906
Mph1103I	ATGCAT	1 cut(s)	938
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	4 cut(s)	285, 363, 612, 765
MslI	CAYNNNNRTG	1 cut(s)	931
MspI	CCGG	1 cut(s)	899
MspR9I	CCNGG	1 cut(s)	900
MunI	CAATTG	2 cut(s)	255, 669
Mva1269I	GAATGC	2 cut(s)	558, 936
MvnI	CGCG	1 cut(s)	591
MwoI	GCNNNNNNNGC	2 cut(s)	109, 434
NciI	CCSGG	1 cut(s)	900
NdeI	CATATG	1 cut(s)	439
NdeII	GATC	6 cut(s)	171, 193, 430, 564, 607, 907
NlaIII	CATG	2 cut(s)	267, 320
NlaIV	GGNNCC	3 cut(s)	15, 371, 494
NmeAIII	GCCGAG	1 cut(s)	795
NsiI	ATGCAT	1 cut(s)	938
NspI	RCATGY	1 cut(s)	267
PaeI	GCATGC	1 cut(s)	267
PceI	AGGCCT	1 cut(s)	749
PctI	GAATGC	2 cut(s)	558, 936
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	791
PkrI	GCNGC	2 cut(s)	348, 381
PspEI	GGTNACC	1 cut(s)	239
PspN4I	GGNNCC	3 cut(s)	15, 371, 494
PspPI	GGNCC	1 cut(s)	824
PsrI	GAACNNNNNNTAC	2 cut(s)	195, 227
PstI	CTGCAG	1 cut(s)	384
PstNI	CAGNNNCTG	1 cut(s)	379
PsuI	RGATCY	3 cut(s)	193, 430, 607
RsaI	GTAC	4 cut(s)	315, 415, 494, 642
RsaNI	GTAC	4 cut(s)	314, 414, 493, 641
RseI	CAYNNNNRTG	1 cut(s)	931
SaqAI	TTAA	4 cut(s)	285, 363, 612, 765
SatI	GCNGC	2 cut(s)	347, 380
Sau3AI	GATC	6 cut(s)	171, 193, 430, 564, 607, 907
Sau96I	GGNCC	1 cut(s)	824
ScrFI	CCNGG	1 cut(s)	900
SetI	ASST	8 cut(s)	19, 54, 114, 222, 381, 494, 771, 844
SfaNI	GCATC	1 cut(s)	887
SfcI	CTRYAG	1 cut(s)	380
SmiMI	CAYNNNNRTG	1 cut(s)	931
SphI	GCATGC	1 cut(s)	267
Sse9I	AATT	9 cut(s)	8, 33, 95, 139, 255, 499, 669, 762, 893
SseBI	AGGCCT	1 cut(s)	749
SsiI	CCGC	2 cut(s)	346, 589
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	6 cut(s)	18, 336, 696, 723, 905, 967
StuI	AGGCCT	1 cut(s)	749
StyD4I	CCNGG	1 cut(s)	898
StyI	CCWWGG	1 cut(s)	820
TaaI	ACNGT	2 cut(s)	398, 488
TasI	AATT	9 cut(s)	8, 33, 95, 139, 255, 499, 669, 762, 893
TatI	WGTACW	2 cut(s)	413, 640
TauI	GCSGC	1 cut(s)	349
TfiI	GAWTC	1 cut(s)	791
Tru1I	TTAA	4 cut(s)	285, 363, 612, 765
Tru9I	TTAA	4 cut(s)	285, 363, 612, 765
TscAI	CASTG	1 cut(s)	888
TseI	GCWGC	1 cut(s)	379
TspDTI	ATGAA	4 cut(s)	105, 333, 396, 540
TspRI	CASTG	1 cut(s)	888
XceI	RCATGY	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	6 cut(s)	18, 336, 696, 723, 905, 967
Zsp2I	ATGCAT	1 cut(s)	938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.