Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001531

Physical Location & Seq

Genomic Coordinates Forward (+)

1567849 .. 1568901

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00157880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAAGCCTTATTAAAACCCAGAATTGAAGAGGCCATGAAGCTGCTTGCTGCAAAAAAGGGTAAAGAAGAACGTTGGTTCACTGCTTCATTAGATCAAAAGATGTTATGTAGGCGCCATTTGCTATCTGTTATTGGGCTTAAAGAGGAACTCGTAGATTCTCTGATTCTTGAAAGGAAGAAAATGGATCTACTGCAACTACTTGTACATAAGCTTCGTTTCGCAGACAATGCTTACCAAAAGAAGCCAATCAAGGCATGCTTGTCAGCTCAAGAGATGAGGAAACTCAAGAGTTTGGCCAAGGAAAAGCAGCTTTTGAAAGAGATCAATGGGAGCCAGAAGCAAGATGGGGAAGAGGATAGTTTTGATTCATTTTGGAATCAGTCGGAAGAAGATCTTGCATTTGTTTGTGATAATACTGGGAACTATATAAGGTACCATAAATGGTCGTGGCATATTGATCGGCATGAACAAATTTGGTGGTTGCAACACCAGATGCCATTTGTGATCAGTAAGGGAGATGCAAAAGATCGTGAAGGAGAAATCAGAGAGCTCCTATGCAGAATAGAAAGCTGTGGAGTTGTACTGCTAAAGAAAGCAGATAAAACACAAATTGCTAATAGTATAACTGGAAATGCTAGTCCTACTCTTGTGAAGGGAAAGACTTGGACTTCTTTGGGTTCAAAAAAGCCTCACAGGAGCAAATTAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

237

Amino Acids

27.54

Weight (kDa)

9.38

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11970
fragaria_vesca	FvH4_2g31530 FvH4_2g31540 FvH4_2g31541 FvH4_2g31550 FvH4_2g31590 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591
malus_domestica	MD08G1065000.v1.1 MD08G1065100.v1.1 MD08G1065200.v1.1 MD15G1056600.v1.1
prunus_persica	Prupe.1G409100_v2.0.a1 Prupe.1G409200_v2.0.a1
pyrus_communis	pycom08g05380 pycom08g05390 pycom15g05300
rosa_chinensis	RchiOBHm_Chr6g0311231
rosa_laevigata	RLG00000010424 RLG00000010425
rosa_multiflora	Rmu_sc0012046.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157850 Rroxscaffold_7G00157860 Rroxscaffold_7G00157870 Rroxscaffold_7G00157880
rosa_rugosa	Rorug06G0386700.1 Rorug06G0386800 Rorug06G0386800
rosa_samantha	Rh6AG500900 Rh6AG501000 Rh6AG501100 Rh6AG501200 Rh6BG511400 Rh6BG511500 Rh6BG511600 Rh6BG511700 Rh6BG511800 Rh6CG517200 Rh6CG517300 Rh6CG517400 Rh6CG517500 Rh6CG517700 Rh6DG503700 Rh6DG503800
rosa_wichuraiana	Rw6G043610 Rw6G043640 Rw6G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	435
AccB1I	GGYRCC	2 cut(s)	114, 435
AclI	AACGTT	1 cut(s)	73
AclWI	GGATC	1 cut(s)	195
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	474
AcyI	GRCGYC	1 cut(s)	115
AfaI	GTAC	3 cut(s)	207, 437, 585
AgsI	TTSAA	4 cut(s)	29, 173, 319, 684
AluBI	AGCT	6 cut(s)	43, 214, 269, 313, 553, 573
AluI	AGCT	6 cut(s)	43, 214, 269, 313, 553, 573
Alw21I	GWGCWC	1 cut(s)	555
AlwI	GGATC	1 cut(s)	195
AoxI	GGCC	2 cut(s)	33, 297
ApeKI	GCWGC	3 cut(s)	43, 50, 310
ApoI	RAATTY	1 cut(s)	474
Asp718I	GGTACC	1 cut(s)	435
AspLEI	GCGC	1 cut(s)	117
BalI	TGGCCA	1 cut(s)	299
BanI	GGYRCC	2 cut(s)	114, 435
BanII	GRGCYC	1 cut(s)	555
BarI	GAAGNNNNNNTAC	2 cut(s)	198, 230
Bbv12I	GWGCWC	1 cut(s)	555
BbvI	GCAGC	3 cut(s)	30, 37, 322
BccI	CCATC	1 cut(s)	341
BcgI	CGANNNNNNTGC	2 cut(s)	443, 477
BclI	TGATCA	1 cut(s)	507
BfaI	CTAG	1 cut(s)	639
BfoI	RGCGCY	1 cut(s)	118
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	3 cut(s)	44, 51, 311
BlsI	GCNGC	3 cut(s)	45, 52, 312
BmiI	GGNNCC	3 cut(s)	116, 335, 437
BmrI	ACTGGG	1 cut(s)	429
BmsI	GCATC	2 cut(s)	486, 511
BmuI	ACTGGG	1 cut(s)	429
BpuEI	CTTGAG	2 cut(s)	255, 272
BsaHI	GRCGYC	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	300
Bse1I	ACTGG	2 cut(s)	424, 634
BseDI	CCNNGG	1 cut(s)	300
BseNI	ACTGG	2 cut(s)	424, 634
BseXI	GCAGC	3 cut(s)	30, 37, 322
BshFI	GGCC	2 cut(s)	35, 299
BshNI	GGYRCC	2 cut(s)	114, 435
BsiHKAI	GWGCWC	1 cut(s)	555
BsnI	GGCC	2 cut(s)	35, 299
Bsp1286I	GDGCHC	1 cut(s)	555
Bsp1407I	TGTACA	1 cut(s)	205
Bsp143I	GATC	7 cut(s)	94, 187, 324, 394, 460, 507, 529
BspANI	GGCC	2 cut(s)	35, 299
BspLI	GGNNCC	3 cut(s)	116, 335, 437
BspPI	GGATC	1 cut(s)	195
BspT107I	GGYRCC	2 cut(s)	114, 435
BsrGI	TGTACA	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	424, 634
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	7 cut(s)	94, 187, 324, 394, 460, 507, 529
BssNI	GRCGYC	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	300
Bst6I	CTCTTC	2 cut(s)	24, 348
BstACI	GRCGYC	1 cut(s)	115
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstAUI	TGTACA	1 cut(s)	205
BstC8I	GCNNGC	2 cut(s)	48, 259
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	7 cut(s)	97, 190, 327, 397, 463, 510, 532
BstMBI	GATC	7 cut(s)	94, 187, 324, 394, 460, 507, 529
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 230
BstNSI	RCATGY	1 cut(s)	261
BstV1I	GCAGC	3 cut(s)	30, 37, 322
BstX2I	RGATCY	2 cut(s)	187, 394
BstYI	RGATCY	2 cut(s)	187, 394
BsuRI	GGCC	2 cut(s)	35, 299
BtsI	GCAGTG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	2 cut(s)	48, 259
CfoI	GCGC	1 cut(s)	117
Csp6I	GTAC	3 cut(s)	206, 436, 584
CspCI	CAANNNNNGTGG	2 cut(s)	461, 496
CviAII	CATG	3 cut(s)	37, 258, 467
CviQI	GTAC	3 cut(s)	206, 436, 584
DinI	GGCGCC	1 cut(s)	116
DpnI	GATC	7 cut(s)	96, 189, 326, 396, 462, 509, 531
DpnII	GATC	7 cut(s)	94, 187, 324, 394, 460, 507, 529
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	2 cut(s)	24, 348
EarI	CTCTTC	2 cut(s)	24, 348
Ecl136II	GAGCTC	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	555
Eco53kI	GAGCTC	1 cut(s)	553
EcoICRI	GAGCTC	1 cut(s)	553
EcoT14I	CCWWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	555
EgeI	GGCGCC	1 cut(s)	116
EheI	GGCGCC	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	3 cut(s)	40, 261, 470
FalI	AAGNNNNNCTT	4 cut(s)	245, 277, 381, 413
FatI	CATG	3 cut(s)	36, 257, 466
FbaI	TGATCA	1 cut(s)	507
Fnu4HI	GCNGC	3 cut(s)	44, 51, 311
FriOI	GRGCYC	1 cut(s)	555
Fsp4HI	GCNGC	3 cut(s)	44, 51, 311
FspBI	CTAG	1 cut(s)	639
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	3 cut(s)	44, 51, 311
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	2 cut(s)	35, 299
HhaI	GCGC	1 cut(s)	117
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	3 cut(s)	40, 261, 470
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	4 cut(s)	158, 166, 368, 379
Hpy166II	GTNNAC	1 cut(s)	81
Hpy188I	TCNGA	3 cut(s)	165, 388, 548
Hpy188III	TCNNGA	4 cut(s)	170, 272, 289, 533
Hpy8I	GTNNAC	1 cut(s)	81
HpyAV	CCTTC	2 cut(s)	530, 649
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	6 cut(s)	53, 196, 401, 487, 524, 561
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 230
HpySE526I	ACGT	1 cut(s)	73
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	3 cut(s)	40, 261, 470
HspAI	GCGC	1 cut(s)	115
KasI	GGCGCC	1 cut(s)	114
KpnI	GGTACC	1 cut(s)	439
Ksp22I	TGATCA	1 cut(s)	507
Kzo9I	GATC	7 cut(s)	94, 187, 324, 394, 460, 507, 529
LmnI	GCTCC	3 cut(s)	333, 558, 699
LpnPI	CCDG	6 cut(s)	34, 350, 405, 506, 615, 682
Lsp1109I	GCAGC	3 cut(s)	30, 37, 322
LweI	GCATC	2 cut(s)	486, 511
MaeI	CTAG	1 cut(s)	639
MaeII	ACGT	1 cut(s)	73
MalI	GATC	7 cut(s)	96, 189, 326, 396, 462, 509, 531
MboI	GATC	7 cut(s)	94, 187, 324, 394, 460, 507, 529
MboII	GAAGA	6 cut(s)	41, 80, 190, 365, 401, 404
MflI	RGATCY	2 cut(s)	187, 394
MhlI	GDGCHC	1 cut(s)	555
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	4 cut(s)	24, 474, 612, 704
MluNI	TGGCCA	1 cut(s)	299
Mly113I	GGCGCC	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	366
MnlI	CCTC	5 cut(s)	25, 139, 273, 349, 702
Mox20I	TGGCCA	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	3 cut(s)	14, 141, 707
Msp20I	TGGCCA	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	121, 230
NarI	GGCGCC	1 cut(s)	115
NdeII	GATC	7 cut(s)	94, 187, 324, 394, 460, 507, 529
NlaIII	CATG	3 cut(s)	40, 261, 470
NlaIV	GGNNCC	3 cut(s)	116, 335, 437
NspI	RCATGY	1 cut(s)	261
PaeI	GCATGC	1 cut(s)	261
PfeI	GAWTC	4 cut(s)	158, 166, 368, 379
PkrI	GCNGC	3 cut(s)	45, 52, 312
PluTI	GGCGCC	1 cut(s)	118
Psp124BI	GAGCTC	1 cut(s)	555
Psp1406I	AACGTT	1 cut(s)	73
PspN4I	GGNNCC	3 cut(s)	116, 335, 437
PsuI	RGATCY	2 cut(s)	187, 394
RsaI	GTAC	3 cut(s)	207, 437, 585
RsaNI	GTAC	3 cut(s)	206, 436, 584
SacI	GAGCTC	1 cut(s)	555
SaqAI	TTAA	3 cut(s)	14, 141, 707
SatI	GCNGC	3 cut(s)	44, 51, 311
Sau3AI	GATC	7 cut(s)	94, 187, 324, 394, 460, 507, 529
SduI	GDGCHC	1 cut(s)	555
SetI	ASST	9 cut(s)	45, 76, 216, 271, 315, 437, 555, 575, 713
SfaNI	GCATC	2 cut(s)	486, 511
SfoI	GGCGCC	1 cut(s)	116
SmlI	CTYRAG	2 cut(s)	270, 287
SmoI	CTYRAG	2 cut(s)	270, 287
SphI	GCATGC	1 cut(s)	261
Sse9I	AATT	4 cut(s)	24, 474, 612, 704
SspDI	GGCGCC	1 cut(s)	114
SspMI	CTAG	1 cut(s)	639
SstI	GAGCTC	1 cut(s)	555
StyI	CCWWGG	1 cut(s)	300
TaiI	ACGT	1 cut(s)	76
TasI	AATT	4 cut(s)	24, 474, 612, 704
TatI	WGTACW	2 cut(s)	205, 583
TfiI	GAWTC	4 cut(s)	158, 166, 368, 379
Tru1I	TTAA	3 cut(s)	14, 141, 707
Tru9I	TTAA	3 cut(s)	14, 141, 707
TscAI	CASTG	1 cut(s)	88
TseI	GCWGC	3 cut(s)	43, 50, 310
TspDTI	ATGAA	4 cut(s)	53, 78, 360, 483
TspRI	CASTG	1 cut(s)	88
XapI	RAATTY	1 cut(s)	474
XceI	RCATGY	1 cut(s)	261
XcmI	CCANNNNNNNNNTGG	1 cut(s)	344
XspI	CTAG	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.