Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001531

Physical Location & Seq

Genomic Coordinates Reverse (-)

70718523 .. 70719444

Gene Structure 922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG511500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGATCTGCTGCAGCAATTTCTGGAGAAGCTTCGTTTTTCGGACAATGCTTACCAAAAGAAACCAATCAAGTCATGCTTGTCAGAACAAGAGATGAATAAACATAAATTGCATTTCCGGATGGTACATGGAAGCAAGAGTTTCGCCAAGGAAAAGCAGCTTTTAAAAGAGATCAAAGTGAGTCAGCAGGAGGATAGTTTTGGTTCATTTTGGAATCAATTGGAAGAAAGTCTTCGTGATTCTGAAAATGTAAGATTTATACAACCTGGTGGTTGCATCACCAGATGCCATTTTCGATCTATAAGAGAGATTCAGTTGAAGACCGTGAAGGAAATATCATATATAGAACTTGAACGGAGGATACAAAGATTGGATGTTGTACTGCAAAAGCATGGAGATGAAGCCATTACTAATAATACTGCTAAGGCTAATTTTTATACTGTCAGTGGAAAAGCTTGGACTTCCTTGGGAGTAAAGAAAGCATTACAGGAGCAAGTTAAGCAGCATGCTGTTAATGAAATAAATGAATTAAGGAAATCCCAGTTGGCTATTGGGACAAAAATTGGACAAGCTGAGGGAGAACTGTTGGTCATGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

23.06

Weight (kDa)

9.38

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001531)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11970
fragaria_vesca	FvH4_2g31530 FvH4_2g31540 FvH4_2g31541 FvH4_2g31550 FvH4_2g31590 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591 FvH4_2g31591
malus_domestica	MD08G1065000.v1.1 MD08G1065100.v1.1 MD08G1065200.v1.1 MD15G1056600.v1.1
prunus_persica	Prupe.1G409100_v2.0.a1 Prupe.1G409200_v2.0.a1
pyrus_communis	pycom08g05380 pycom08g05390 pycom15g05300
rosa_chinensis	RchiOBHm_Chr6g0311231
rosa_laevigata	RLG00000010424 RLG00000010425
rosa_multiflora	Rmu_sc0012046.1_g000005
rosa_roxburghii	Rroxscaffold_7G00157850 Rroxscaffold_7G00157860 Rroxscaffold_7G00157870 Rroxscaffold_7G00157880
rosa_rugosa	Rorug06G0386700.1 Rorug06G0386800 Rorug06G0386800
rosa_samantha	Rh6AG500900 Rh6AG501000 Rh6AG501100 Rh6AG501200 Rh6BG511400 Rh6BG511500 Rh6BG511600 Rh6BG511700 Rh6BG511800 Rh6CG517200 Rh6CG517300 Rh6CG517400 Rh6CG517500 Rh6CG517700 Rh6DG503700 Rh6DG503800
rosa_wichuraiana	Rw6G043610 Rw6G043640 Rw6G043650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	117
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	2 cut(s)	126, 381
AgsI	TTSAA	2 cut(s)	319, 353
AjnI	CCWGG	1 cut(s)	265
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
AluBI	AGCT	4 cut(s)	31, 160, 455, 572
AluI	AGCT	4 cut(s)	31, 160, 455, 572
AlwI	GGATC	1 cut(s)	12
Aor13HI	TCCGGA	1 cut(s)	117
ApeKI	GCWGC	4 cut(s)	10, 13, 157, 502
Asp700I	GAANNNNTTC	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	271
BbsI	GAAGAC	2 cut(s)	224, 326
BbvCI	CCTCAGC	1 cut(s)	573
BbvI	GCAGC	3 cut(s)	25, 169, 514
BccI	CCATC	1 cut(s)	115
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BciT130I	CCWGG	1 cut(s)	267
BciVI	GTATCC	1 cut(s)	354
BfmI	CTRYAG	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	354
BisI	GCNGC	4 cut(s)	11, 14, 158, 503
BlsI	GCNGC	4 cut(s)	12, 15, 159, 504
Bme1390I	CCNGG	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	267
BmrI	ACTGGG	1 cut(s)	535
BmsI	GCATC	2 cut(s)	275, 285
BmuI	ACTGGG	1 cut(s)	535
BpiI	GAAGAC	2 cut(s)	224, 326
BpmI	CTGGAG	1 cut(s)	44
Bpu10I	CCTNAGC	2 cut(s)	423, 573
BsaJI	CCNNGG	2 cut(s)	147, 465
BsaWI	WCCGGW	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	541
BseAI	TCCGGA	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	267
BseDI	CCNNGG	2 cut(s)	147, 465
BseGI	GGATG	2 cut(s)	126, 379
BseMII	CTCAG	1 cut(s)	564
BseNI	ACTGG	1 cut(s)	541
BseXI	GCAGC	3 cut(s)	25, 169, 514
BsiSI	CCGG	1 cut(s)	118
BslFI	GGGAC	1 cut(s)	568
BsmFI	GGGAC	1 cut(s)	568
Bsp13I	TCCGGA	1 cut(s)	117
Bsp143I	GATC	3 cut(s)	4, 171, 296
BspCNI	CTCAG	1 cut(s)	565
BspEI	TCCGGA	1 cut(s)	117
BspHI	TCATGA	1 cut(s)	591
BspMAI	CTGCAG	1 cut(s)	15
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	541
BssECI	CCNNGG	2 cut(s)	147, 465
BssMI	GATC	3 cut(s)	4, 171, 296
BssT1I	CCWWGG	2 cut(s)	147, 465
Bst2UI	CCWGG	1 cut(s)	267
Bst4CI	ACNGT	3 cut(s)	325, 442, 585
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	2 cut(s)	423, 573
BstF5I	GGATG	2 cut(s)	126, 379
BstKTI	GATC	3 cut(s)	7, 174, 299
BstMBI	GATC	3 cut(s)	4, 171, 296
BstMWI	GCNNNNNNNGC	1 cut(s)	499
BstNI	CCWGG	1 cut(s)	267
BstNSI	RCATGY	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	265
BstSFI	CTRYAG	1 cut(s)	11
BstV1I	GCAGC	3 cut(s)	25, 169, 514
BstV2I	GAAGAC	2 cut(s)	224, 326
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuI	GTATCC	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	126, 379
BtsIMutI	CAGTG	1 cut(s)	451
Cac8I	GCNNGC	1 cut(s)	507
CciI	TCATGA	1 cut(s)	591
CsiI	ACCWGGT	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	125, 380
CviAII	CATG	5 cut(s)	75, 128, 392, 506, 592
CviJI	RGCY	7 cut(s)	31, 160, 404, 428, 455, 548, 572
CviKI_1	RGCY	7 cut(s)	31, 160, 404, 428, 455, 548, 572
CviQI	GTAC	2 cut(s)	125, 380
DdeI	CTNAG	2 cut(s)	423, 573
DpnI	GATC	3 cut(s)	6, 173, 298
DpnII	GATC	3 cut(s)	4, 171, 296
DraI	TTTAAA	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	147, 465
EcoRII	CCWGG	1 cut(s)	265
EcoT14I	CCWWGG	2 cut(s)	147, 465
ErhI	CCWWGG	2 cut(s)	147, 465
FaeI	CATG	5 cut(s)	78, 131, 395, 509, 595
FalI	AAGNNNNNCTT	4 cut(s)	62, 94, 216, 248
FaqI	GGGAC	1 cut(s)	568
FatI	CATG	5 cut(s)	74, 127, 391, 505, 591
Fnu4HI	GCNGC	4 cut(s)	11, 14, 158, 503
FokI	GGATG	2 cut(s)	133, 386
Fsp4HI	GCNGC	4 cut(s)	11, 14, 158, 503
GluI	GCNGC	4 cut(s)	11, 14, 158, 503
GsuI	CTGGAG	1 cut(s)	44
HapII	CCGG	1 cut(s)	118
Hin1II	CATG	5 cut(s)	78, 131, 395, 509, 595
HindIII	AAGCTT	2 cut(s)	29, 453
HinfI	GANTC	4 cut(s)	181, 214, 239, 310
HpaII	CCGG	1 cut(s)	118
HphI	GGTGA	1 cut(s)	271
Hpy188I	TCNGA	3 cut(s)	43, 85, 244
Hpy188III	TCNNGA	4 cut(s)	23, 118, 236, 592
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	3 cut(s)	325, 442, 585
HpyCH4V	TGCA	4 cut(s)	13, 112, 276, 385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	499
HpyF3I	CTNAG	2 cut(s)	423, 573
Hsp92II	CATG	5 cut(s)	78, 131, 395, 509, 595
Kpn2I	TCCGGA	1 cut(s)	117
Kzo9I	GATC	3 cut(s)	4, 171, 296
LmnI	GCTCC	1 cut(s)	490
LpnPI	CCDG	8 cut(s)	8, 131, 173, 252, 279, 295, 473, 554
Lsp1109I	GCAGC	3 cut(s)	25, 169, 514
LweI	GCATC	2 cut(s)	275, 285
MabI	ACCWGGT	1 cut(s)	265
MalI	GATC	3 cut(s)	6, 173, 298
MboI	GATC	3 cut(s)	4, 171, 296
MboII	GAAGA	3 cut(s)	224, 236, 331
MfeI	CAATTG	1 cut(s)	218
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	6 cut(s)	17, 107, 218, 430, 527, 561
MlyI	GAGTC	1 cut(s)	190
MnlI	CCTC	3 cut(s)	184, 351, 568
MroI	TCCGGA	1 cut(s)	117
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	4 cut(s)	164, 498, 513, 530
MslI	CAYNNNNRTG	1 cut(s)	396
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	1 cut(s)	267
MunI	CAATTG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	499
NdeII	GATC	3 cut(s)	4, 171, 296
NlaIII	CATG	5 cut(s)	78, 131, 395, 509, 595
NspI	RCATGY	1 cut(s)	509
PaeI	GCATGC	1 cut(s)	509
PagI	TCATGA	1 cut(s)	591
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	3 cut(s)	214, 239, 310
PkrI	GCNGC	4 cut(s)	12, 15, 159, 504
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
Psp6I	CCWGG	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	265
PsrI	GAACNNNNNNTAC	2 cut(s)	345, 377
PstI	CTGCAG	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	126, 381
RsaNI	GTAC	2 cut(s)	125, 380
RseI	CAYNNNNRTG	1 cut(s)	396
SaqAI	TTAA	4 cut(s)	164, 498, 513, 530
SatI	GCNGC	4 cut(s)	11, 14, 158, 503
Sau3AI	GATC	3 cut(s)	4, 171, 296
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	267
SetI	ASST	5 cut(s)	33, 162, 268, 457, 574
SexAI	ACCWGGT	1 cut(s)	265
SfaNI	GCATC	2 cut(s)	275, 285
SfcI	CTRYAG	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	396
SphI	GCATGC	1 cut(s)	509
Sse9I	AATT	6 cut(s)	17, 107, 218, 430, 527, 561
StyD4I	CCNGG	1 cut(s)	265
StyI	CCWWGG	2 cut(s)	147, 465
TaaI	ACNGT	3 cut(s)	325, 442, 585
TaqI	TCGA	1 cut(s)	295
TasI	AATT	6 cut(s)	17, 107, 218, 430, 527, 561
TatI	WGTACW	1 cut(s)	379
TfiI	GAWTC	3 cut(s)	214, 239, 310
Tru1I	TTAA	4 cut(s)	164, 498, 513, 530
Tru9I	TTAA	4 cut(s)	164, 498, 513, 530
TscAI	CASTG	1 cut(s)	451
TseI	GCWGC	4 cut(s)	10, 13, 157, 502
TspDTI	ATGAA	5 cut(s)	110, 195, 414, 531, 540
TspGWI	ACGGA	1 cut(s)	370
TspRI	CASTG	1 cut(s)	451
XceI	RCATGY	1 cut(s)	509
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XmnI	GAANNNNTTC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.