Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Reverse (-)

3882231 .. 3883111

Gene Structure 881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G12020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGATTTAGGAAGGTTTCCAATAATCTCAATCCTCGAAGACATGCTTGAAGTCCCCGAAGACCACAACAACGAGAAGACCCGCAACAACCCTTCACGAGTTTACATGCGAGACGCTAAGGCAATGGCTGCTACACCTGCTGACGTCATCGAGCACCCTAACGCATATGCATTCGTCGTGGACATGCCTGGAATCAAAGGAGATGAGATCAAGGTTCAGGTCGAGAACGACAATGTGCTTGTGGTGAGTGGAGAGAGGCAGAGAGAGAACAAAGAAAACGAAGGTGTGAAGTATGTGAGGATGGAGAGAAGAATGGGTAAGTTCATGAGGAAGTTTCAGTTGCCTGAAAATGCAGATTTGGACAAGATCTCTGCTGTTTGTCATGACGGTGTGTTGAAGGTTACTGTTCAGAAACTTCCTCCTCCGGAACCAAAGAAACCAAAGACAATTCAAGTTCAAGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006457 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009987 GO:0010035 GO:0042221 GO:0042493 GO:0042542 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0051082 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

155

Amino Acids

17.62

Weight (kDa)

6.32

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	48 - 153	4.1e-33	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	145
AatII	GACGTC	1 cut(s)	147
Acc36I	ACCTGC	1 cut(s)	145
AccIII	TCCGGA	1 cut(s)	424
AciI	CCGC	1 cut(s)	82
AcyI	GRCGYC	1 cut(s)	144
AgsI	TTSAA	4 cut(s)	50, 397, 452, 458
AjnI	CCWGG	1 cut(s)	187
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	105
Aor13HI	TCCGGA	1 cut(s)	424
ApeKI	GCWGC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	256
BauI	CACGAG	1 cut(s)	96
BbsI	GAAGAC	3 cut(s)	45, 66, 83
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	1 cut(s)	295
BciT130I	CCWGG	1 cut(s)	189
BcoDI	GTCTC	1 cut(s)	105
BfuAI	ACCTGC	1 cut(s)	145
BglII	AGATCT	1 cut(s)	366
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bme1390I	CCNGG	1 cut(s)	189
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	1 cut(s)	189
BpiI	GAAGAC	3 cut(s)	45, 66, 83
Bpu10I	CCTNAGC	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	424
Bse3DI	GCAATG	1 cut(s)	129
BseAI	TCCGGA	1 cut(s)	424
BseBI	CCWGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	411
BseXI	GCAGC	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	425
BslFI	GGGAC	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	105
BsmBI	CGTCTC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	38
BsmI	GAATGC	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp13I	TCCGGA	1 cut(s)	424
Bsp143I	GATC	2 cut(s)	207, 366
BspACI	CCGC	1 cut(s)	82
BspEI	TCCGGA	1 cut(s)	424
BspHI	TCATGA	2 cut(s)	324, 382
BspLI	GGNNCC	1 cut(s)	429
BspMI	ACCTGC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	129
BssMI	GATC	2 cut(s)	207, 366
BssNI	GRCGYC	1 cut(s)	144
BssSI	CACGAG	1 cut(s)	96
Bst2BI	CACGAG	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	389, 406
BstACI	GRCGYC	1 cut(s)	144
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	306
BstKTI	GATC	2 cut(s)	210, 369
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	2 cut(s)	207, 366
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 137
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	3 cut(s)	46, 109, 187
BstSCI	CCNGG	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	115
BstV2I	GAAGAC	3 cut(s)	45, 66, 83
BstX2I	RGATCY	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	306
BveI	ACCTGC	1 cut(s)	145
CciI	TCATGA	2 cut(s)	324, 382
CseI	GACGC	1 cut(s)	122
CviAII	CATG	5 cut(s)	43, 106, 184, 325, 383
CviJI	RGCY	1 cut(s)	128
CviKI_1	RGCY	1 cut(s)	128
DdeI	CTNAG	1 cut(s)	117
DpnI	GATC	2 cut(s)	209, 368
DpnII	GATC	2 cut(s)	207, 366
EcoRII	CCWGG	1 cut(s)	187
EcoT22I	ATGCAT	1 cut(s)	172
Esp3I	CGTCTC	1 cut(s)	105
FaeI	CATG	5 cut(s)	46, 109, 187, 328, 386
FaiI	YATR	8 cut(s)	44, 107, 166, 168, 185, 294, 326, 384
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FaqI	GGGAC	1 cut(s)	38
FatI	CATG	5 cut(s)	42, 105, 183, 324, 382
FauI	CCCGC	1 cut(s)	89
FauNDI	CATATG	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	1 cut(s)	313
Fsp4HI	GCNGC	1 cut(s)	129
GluI	GCNGC	1 cut(s)	129
HapII	CCGG	1 cut(s)	425
HgaI	GACGC	1 cut(s)	122
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	5 cut(s)	46, 109, 187, 328, 386
HinfI	GANTC	1 cut(s)	192
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	2 cut(s)	103, 181
Hpy188I	TCNGA	1 cut(s)	411
Hpy188III	TCNNGA	5 cut(s)	96, 223, 325, 383, 425
Hpy8I	GTNNAC	2 cut(s)	103, 181
Hpy99I	CGWCG	1 cut(s)	179
HpyAV	CCTTC	4 cut(s)	6, 102, 275, 391
HpyCH4III	ACNGT	2 cut(s)	389, 406
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	2 cut(s)	170, 353
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 137
HpyF3I	CTNAG	1 cut(s)	117
HpySE526I	ACGT	1 cut(s)	144
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	5 cut(s)	46, 109, 187, 328, 386
Kpn2I	TCCGGA	1 cut(s)	424
Kzo9I	GATC	2 cut(s)	207, 366
LpnPI	CCDG	6 cut(s)	150, 174, 201, 203, 357, 438
Lsp1109I	GCAGC	1 cut(s)	115
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	2 cut(s)	209, 368
MboI	GATC	2 cut(s)	207, 366
MboII	GAAGA	4 cut(s)	50, 71, 88, 321
MflI	RGATCY	1 cut(s)	366
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	1 cut(s)	447
MnlI	CCTC	6 cut(s)	44, 249, 291, 321, 429, 432
Mph1103I	ATGCAT	1 cut(s)	172
MroI	TCCGGA	1 cut(s)	424
MslI	CAYNNNNRTG	1 cut(s)	387
MspI	CCGG	1 cut(s)	425
MspR9I	CCNGG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	128, 137
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	2 cut(s)	207, 366
NlaIII	CATG	5 cut(s)	46, 109, 187, 328, 386
NlaIV	GGNNCC	1 cut(s)	429
NsiI	ATGCAT	1 cut(s)	172
NspI	RCATGY	3 cut(s)	46, 109, 187
PagI	TCATGA	2 cut(s)	324, 382
PaqCI	CACCTGC	1 cut(s)	145
PctI	GAATGC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	429
PsuI	RGATCY	1 cut(s)	366
RseI	CAYNNNNRTG	1 cut(s)	387
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	2 cut(s)	207, 366
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	7 cut(s)	17, 139, 147, 216, 222, 286, 402
SmiMI	CAYNNNNRTG	1 cut(s)	387
Sse9I	AATT	1 cut(s)	447
SsiI	CCGC	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	389, 406
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	3 cut(s)	36, 150, 222
TasI	AATT	1 cut(s)	447
TfiI	GAWTC	1 cut(s)	192
TseI	GCWGC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	313
XceI	RCATGY	3 cut(s)	46, 109, 187
ZraI	GACGTC	1 cut(s)	145
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.