Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001449

Physical Location & Seq

Genomic Coordinates Forward (+)

1379286 .. 1379954

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00157600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGTCGGCGGTGCTTCTCGACCGTTATAGAAGATTAGGAGGAGCTGTGGAGACGAACATGCTAGAATCTCCTTACCTCTTTCCACGTGTCTCCAGAACTTTGTATAGCGCACCTACACTGCCATTAACACCACTGCTTTCCTCCACCTATAAATGCCCCTATCCGCTGCTCCCAATCATCCACGAACAAAATTCCAAAGCACTCGAACACACGACAGCTCTCACAACCAAACAAGCAAACATTTCACTAACCAAGAAGAGGAGAATGGATTTCAGAATCATGGGTCTGGATGCTCCAATTATGACAGCACTGCAGCAGCTACAGCAGCTGGCGGACTTCCCTGAGGAGAACGAGAAGACCTCCAACGCCCCGACCCGGACCTATTTCCGCGACGCCAAGGCTATGGCTTCCACTCCGGCCGACGTGAAGGAGTACCCCAATTCCTACGTGTTCGTGATCGACATGCCGGGGCTCAAGTCAGGGGACATCAAGGTGCAGGTGGAGGATGACAATGTGCTTCTGATCAGCGGCGAGAGGAAGAGGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0044424 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

182

Amino Acids

20.47

Weight (kDa)

8.94

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	141 - 180	1.3e-06	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12020 AT5G12030
fragaria_vesca	FvH4_2g31371
malus_domestica	MD00G1181700.v1.1 MD08G1068000.v1.1 MD08G1068200.v1.1 MD08G1068300.v1.1 MD08G1068500.v1.1 MD08G1068700.v1.1 MD08G1068800.v1.1 MD15G1053500.v1.1 MD15G1053600.v1.1 MD15G1053800.v1.1
prunus_persica	Prupe.1G407100_v2.0.a1 Prupe.1G407200_v2.0.a1 Prupe.1G407300_v2.0.a1
pyrus_communis	pycom08g05660 pycom08g05670
rosa_chinensis	RchiOBHm_Chr6g0311451 RchiOBHm_Chr6g0311461 RchiOBHm_Chr6g0311471
rosa_laevigata	RLG00000010403 RLG00000010404 RLG00000010405
rosa_multiflora	Rmu_co8421495.1_g000001 Rmu_sc0006915.1_g000010 Rmu_sc0006915.1_g000011 Rmu_sc0006915.1_g000012 Rmu_sc0013619.1_g000003 Rmu_sc0013619.1_g000004 Rmu_sc0013619.1_g000006 Rmu_sc0015790.1_g000003 Rmu_sc0015790.1_g000004
rosa_roxburghii	Rroxscaffold_7G00157590 Rroxscaffold_7G00157600
rosa_rugosa	Rorug06G0389100 Rorug06G0389100 Rorug06G0389200
rosa_samantha	Rh2AG205100 Rh2BG216900 Rh2DG211400 Rh6AG503500 Rh6AG503700 Rh6BG514200 Rh6BG514300 Rh6CG520000 Rh6CG520100 Rh6DG506100
rosa_wichuraiana	Rw2G016340 Rw6G043850 Rw6G043860 Rw6G043870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	487
Acc36I	ACCTGC	1 cut(s)	487
AccII	CGCG	1 cut(s)	390
AciI	CCGC	5 cut(s)	8, 164, 332, 388, 528
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	190
AcvI	CACGTG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	393
AfaI	GTAC	1 cut(s)	434
AfiI	CCNNNNNNNGG	2 cut(s)	258, 375
AflIII	ACRYGT	2 cut(s)	85, 447
AjiI	CACGTC	1 cut(s)	424
AluBI	AGCT	4 cut(s)	44, 218, 319, 328
AluI	AGCT	4 cut(s)	44, 218, 319, 328
Alw26I	GTCTC	2 cut(s)	44, 94
AlwNI	CAGNNNCTG	1 cut(s)	328
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	4 cut(s)	166, 313, 316, 325
ApoI	RAATTY	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	378
AsuC2I	CCSGG	2 cut(s)	376, 468
AvaII	GGWCC	1 cut(s)	378
AxyI	CCTNAGG	1 cut(s)	342
BanII	GRGCYC	1 cut(s)	474
BbrPI	CACGTG	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	362
BbvI	GCAGC	4 cut(s)	153, 325, 328, 337
BclI	TGATCA	1 cut(s)	522
BcnI	CCSGG	2 cut(s)	376, 468
BcoDI	GTCTC	2 cut(s)	44, 94
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	2 cut(s)	311, 320
BfuAI	ACCTGC	1 cut(s)	487
BisI	GCNGC	5 cut(s)	167, 314, 317, 326, 529
BlsI	GCNGC	5 cut(s)	168, 315, 318, 327, 530
Bme1390I	CCNGG	2 cut(s)	376, 468
Bme18I	GGWCC	1 cut(s)	378
BmgBI	CACGTC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	378
BmrFI	CCNGG	2 cut(s)	376, 468
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	362
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
BpmI	CTGGAG	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	458
BpuMI	CCSGG	2 cut(s)	376, 468
BsaAI	YACGTR	2 cut(s)	86, 448
BsaHI	GRCGYC	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	396, 467
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bsc4I	CCNNNNNNNGG	2 cut(s)	258, 375
Bse21I	CCTNAGG	1 cut(s)	342
BseDI	CCNNGG	2 cut(s)	396, 467
BseGI	GGATG	3 cut(s)	177, 295, 511
BseLI	CCNNNNNNNGG	2 cut(s)	258, 375
BseMII	CTCAG	1 cut(s)	333
BseRI	GAGGAG	3 cut(s)	54, 274, 359
BseX3I	CGGCCG	1 cut(s)	417
BseXI	GCAGC	4 cut(s)	153, 325, 328, 337
BsgI	GTGCAG	1 cut(s)	515
Bsh1236I	CGCG	1 cut(s)	390
Bsh1285I	CGRYCG	2 cut(s)	22, 420
BshFI	GGCC	1 cut(s)	419
BsiEI	CGRYCG	2 cut(s)	22, 420
BsiSI	CCGG	3 cut(s)	376, 416, 467
BslFI	GGGAC	1 cut(s)	497
BslI	CCNNNNNNNGG	2 cut(s)	258, 375
BsmAI	GTCTC	2 cut(s)	44, 94
BsmBI	CGTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	497
BsnI	GGCC	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	2 cut(s)	456, 522
BspACI	CCGC	5 cut(s)	8, 164, 332, 388, 528
BspANI	GGCC	1 cut(s)	419
BspCNI	CTCAG	1 cut(s)	334
BspFNI	CGCG	1 cut(s)	390
BspMAI	CTGCAG	1 cut(s)	315
BspMI	ACCTGC	1 cut(s)	487
BssECI	CCNNGG	2 cut(s)	396, 467
BssMI	GATC	2 cut(s)	456, 522
BssNI	GRCGYC	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	23
Bst6I	CTCTTC	2 cut(s)	251, 533
BstACI	GRCGYC	1 cut(s)	393
BstBAI	YACGTR	2 cut(s)	86, 448
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	3 cut(s)	177, 295, 511
BstFNI	CGCG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	2 cut(s)	459, 525
BstMAI	GTCTC	2 cut(s)	44, 94
BstMBI	GATC	2 cut(s)	456, 522
BstMCI	CGRYCG	2 cut(s)	22, 420
BstMWI	GCNNNNNNNGC	2 cut(s)	322, 325
BstNSI	RCATGY	2 cut(s)	61, 466
BstSCI	CCNGG	2 cut(s)	374, 466
BstSFI	CTRYAG	2 cut(s)	311, 320
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	4 cut(s)	153, 325, 328, 337
BstV2I	GAAGAC	1 cut(s)	362
BstXI	CCANNNNNNTGG	1 cut(s)	403
BstZI	CGGCCG	1 cut(s)	417
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	1 cut(s)	419
BtrI	CACGTC	1 cut(s)	424
BtsCI	GGATG	3 cut(s)	177, 295, 511
BtsI	GCAGTG	3 cut(s)	116, 131, 308
BtsIMutI	CAGTG	3 cut(s)	116, 131, 308
BveI	ACCTGC	1 cut(s)	487
Cac8I	GCNNGC	1 cut(s)	330
CaiI	CAGNNNCTG	1 cut(s)	328
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	378
CseI	GACGC	1 cut(s)	401
Csp6I	GTAC	1 cut(s)	433
CviAII	CATG	3 cut(s)	58, 280, 463
CviJI	RGCY	8 cut(s)	44, 218, 319, 328, 401, 407, 419, 472
CviKI_1	RGCY	8 cut(s)	44, 218, 319, 328, 401, 407, 419, 472
CviQI	GTAC	1 cut(s)	433
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	2 cut(s)	458, 524
DpnII	GATC	2 cut(s)	456, 522
EaeI	YGGCCR	1 cut(s)	417
EagI	CGGCCG	1 cut(s)	417
Eam1104I	CTCTTC	2 cut(s)	251, 533
EarI	CTCTTC	2 cut(s)	251, 533
EciI	GGCGGA	1 cut(s)	347
EclXI	CGGCCG	1 cut(s)	417
Eco130I	CCWWGG	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	474
Eco47I	GGWCC	1 cut(s)	378
Eco52I	CGGCCG	1 cut(s)	417
Eco72I	CACGTG	1 cut(s)	86
Eco81I	CCTNAGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	396
Esp3I	CGTCTC	1 cut(s)	44
FaeI	CATG	3 cut(s)	61, 283, 466
FaiI	YATR	8 cut(s)	27, 59, 105, 150, 281, 302, 404, 464
FaqI	GGGAC	1 cut(s)	497
FatI	CATG	3 cut(s)	57, 279, 462
FbaI	TGATCA	1 cut(s)	522
Fnu4HI	GCNGC	5 cut(s)	167, 314, 317, 326, 529
FokI	GGATG	3 cut(s)	164, 302, 518
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	5 cut(s)	167, 314, 317, 326, 529
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	5 cut(s)	167, 314, 317, 326, 529
GsuI	CTGGAG	1 cut(s)	76
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	3 cut(s)	376, 416, 467
HgaI	GACGC	1 cut(s)	401
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	3 cut(s)	61, 283, 466
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HinfI	GANTC	2 cut(s)	65, 276
HpaII	CCGG	3 cut(s)	376, 416, 467
Hpy188I	TCNGA	2 cut(s)	275, 522
Hpy188III	TCNNGA	4 cut(s)	17, 93, 287, 454
Hpy99I	CGWCG	2 cut(s)	395, 425
HpyAV	CCTTC	1 cut(s)	421
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4IV	ACGT	3 cut(s)	85, 423, 447
HpyCH4V	TGCA	2 cut(s)	313, 496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	322, 325
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	3 cut(s)	85, 423, 447
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	3 cut(s)	61, 283, 466
HspAI	GCGC	1 cut(s)	108
Ksp22I	TGATCA	1 cut(s)	522
Kzo9I	GATC	2 cut(s)	456, 522
LmnI	GCTCC	3 cut(s)	41, 174, 298
LpnPI	CCDG	9 cut(s)	106, 272, 314, 354, 389, 429, 465, 480, 482
Lsp1109I	GCAGC	4 cut(s)	153, 325, 328, 337
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	3 cut(s)	85, 423, 447
MalI	GATC	2 cut(s)	458, 524
MboI	GATC	2 cut(s)	456, 522
MboII	GAAGA	3 cut(s)	42, 268, 367
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	3 cut(s)	190, 297, 439
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	9 cut(s)	32, 86, 151, 252, 337, 370, 496, 528, 534
MseI	TTAA	1 cut(s)	125
MslI	CAYNNNNRTG	1 cut(s)	491
MspA1I	CMGCKG	3 cut(s)	166, 328, 528
MspI	CCGG	3 cut(s)	376, 416, 467
MspR9I	CCNGG	2 cut(s)	376, 468
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	322, 325
NciI	CCSGG	2 cut(s)	376, 468
NdeII	GATC	2 cut(s)	456, 522
NlaIII	CATG	3 cut(s)	61, 283, 466
NspI	RCATGY	2 cut(s)	61, 466
PaqCI	CACCTGC	1 cut(s)	487
PfeI	GAWTC	2 cut(s)	65, 276
PkrI	GCNGC	5 cut(s)	168, 315, 318, 327, 530
PmaCI	CACGTG	1 cut(s)	86
PmlI	CACGTG	1 cut(s)	86
Ppu21I	YACGTR	2 cut(s)	86, 448
PspCI	CACGTG	1 cut(s)	86
PspPI	GGNCC	1 cut(s)	378
PstI	CTGCAG	1 cut(s)	315
PstNI	CAGNNNCTG	1 cut(s)	328
PvuII	CAGCTG	1 cut(s)	328
RsaI	GTAC	1 cut(s)	434
RsaNI	GTAC	1 cut(s)	433
RseI	CAYNNNNRTG	1 cut(s)	491
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	5 cut(s)	167, 314, 317, 326, 529
Sau3AI	GATC	2 cut(s)	456, 522
Sau96I	GGNCC	1 cut(s)	378
ScrFI	CCNGG	2 cut(s)	376, 468
SduI	GDGCHC	1 cut(s)	474
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	2 cut(s)	311, 320
SinI	GGWCC	1 cut(s)	378
SmiMI	CAYNNNNRTG	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	3 cut(s)	190, 297, 439
SsiI	CCGC	5 cut(s)	8, 164, 332, 388, 528
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	2 cut(s)	374, 466
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	23
TaiI	ACGT	3 cut(s)	88, 426, 450
TaqI	TCGA	3 cut(s)	18, 204, 459
TasI	AATT	3 cut(s)	190, 297, 439
TauI	GCSGC	1 cut(s)	531
TfiI	GAWTC	2 cut(s)	65, 276
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TscAI	CASTG	3 cut(s)	123, 138, 315
TseI	GCWGC	4 cut(s)	166, 313, 316, 325
TspRI	CASTG	3 cut(s)	123, 138, 315
VpaK11BI	GGWCC	1 cut(s)	378
XapI	RAATTY	1 cut(s)	190
XceI	RCATGY	2 cut(s)	61, 466
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.